For: | Farooq QUA, Shaukat Z, Aiman S, Li CH. Protein-protein interactions: Methods, databases, and applications in virus-host study. World J Virol 2021; 10(6): 288-300 [PMID: 34909403 DOI: 10.5501/wjv.v10.i6.288] |
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URL: | https://www.wjgnet.com/2220-3249/full/v10/i6/288.htm |
Number | Citing Articles |
1 |
Biswajit Karan, Satyajit Mahapatra, Sitanshu Sekhar Sahu, Dev Mani Pandey, Sumit Chakravarty. Computational models for prediction of protein–protein interaction in rice and Magnaporthe grisea. Frontiers in Plant Science 2023; 13 doi: 10.3389/fpls.2022.1046209
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2 |
Alvaro Furones Cuadrado, Daniël Van Damme, Martin Janda. Unlocking protein–protein interactions in plants: a comprehensive review of established and emerging techniques. Journal of Experimental Botany 2024; 75(17): 5220 doi: 10.1093/jxb/erae088
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3 |
Shuangyi Cai, Thomas Hu, Abhijeet Venkataraman, Felix G. Rivera Moctezuma, Efe Ozturk, Nicholas Zhang, Mingshuang Wang, Tatenda Zvidzai, Sandip Das, Adithya Pillai, Frank Schneider, Suresh S. Ramalingam, You-Take Oh, Shi-Yong Sun, Ahmet F. Coskun. Spatially resolved subcellular protein–protein interactomics in drug-perturbed lung-cancer cultures and tissues. Nature Biomedical Engineering 2024; doi: 10.1038/s41551-024-01271-x
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4 |
Prabuddha Waduge, Hong Tian, Keith A. Webster, Wei Li. Profiling disease-selective drug targets: From proteomics to ligandomics. Drug Discovery Today 2023; 28(3): 103430 doi: 10.1016/j.drudis.2022.103430
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5 |
Gomathy Subramanian, Hannah Lalengzuali Fanai, Jagdish Chand, Sheikh F. Ahmad, Sabry M. Attia, Talha Bin Emran. System biology-based assessment of the molecular mechanism of IMPHY000797 in Parkinson’s disease: a network pharmacology and in-silico evaluation. Scientific Reports 2024; 14(1) doi: 10.1038/s41598-024-75603-x
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6 |
Peicong Lin, Yumeng Yan, Sheng-You Huang. DeepHomo2.0: improved protein–protein contact prediction of homodimers by transformer-enhanced deep learning. Briefings in Bioinformatics 2023; 24(1) doi: 10.1093/bib/bbac499
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7 |
Yasunari Matsuzaka, Ryu Yashiro. Applications of reinforcement learning, machine learning, and virtual screening in SARS-CoV-2-related proteins . Computing and Artificial Intelligence 2024; 2(2): 1279 doi: 10.59400/cai.v2i2.1279
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8 |
Lingtao Chen, Kazi Fahim Ahmad Nasif, Bobin Deng, Shuteng Niu, Chloe Yixin Xie. Predicting Protein-Protein Binding Affinity with Deep Learning: A Comparative Analysis of CNN and Transformer Models. 2024 IEEE 36th International Conference on Tools with Artificial Intelligence (ICTAI) 2024; : 548 doi: 10.1109/ICTAI62512.2024.00083
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9 |
Maria-Anna Kyrgiafini, Themistoklis Giannoulis, Alexia Chatziparasidou, Nikolaos Christoforidis, Zissis Mamuris. Whole-Genome Profile of Greek Patients with Teratozοοspermia: Identification of Candidate Variants and Genes. Genes 2022; 13(9): 1606 doi: 10.3390/genes13091606
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10 |
Yane Li, Chengfeng Wang, Haibo Gu, Hailin Feng, Yaoping Ruan. ESMDNN-PPI: a new protein–protein interaction prediction model developed with protein language model of ESM2 and deep neural network. Measurement Science and Technology 2024; 35(12): 125701 doi: 10.1088/1361-6501/ad761c
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11 |
Ali A. Rabaan, Muhammed A. Bakhrebah, Jawaher Alotaibi, Zuhair S. Natto, Rahaf S. Alkhaibari, Eman Alawad, Huda M. Alshammari, Sara Alwarthan, Mashael Alhajri, Mohammed S. Almogbel, Maha H. Aljohani, Fadwa S. Alofi, Nada Alharbi, Wasl Al-Adsani, Abdulrahman M. Alsulaiman, Jehad Aldali, Fatimah Al Ibrahim, Reem S. Almaghrabi, Awad Al-Omari, Mohammed Garout. Unleashing the power of artificial intelligence for diagnosing and treating infectious diseases: A comprehensive review. Journal of Infection and Public Health 2023; 16(11): 1837 doi: 10.1016/j.jiph.2023.08.021
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12 |
Giridhar Chandrasekharan, Meera Unnikrishnan. High throughput methods to study protein-protein interactions during host-pathogen interactions. European Journal of Cell Biology 2024; 103(2): 151393 doi: 10.1016/j.ejcb.2024.151393
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13 |
Jyoti Kant Choudhari, Abhinav Gupta, Shaifali Bhatt, Sonu Kurmi, Usha Chouhan. Systems Biology and In-Depth Applications for Unlocking Diseases. 2025; : 165 doi: 10.1016/B978-0-443-22326-6.00013-4
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14 |
Andrea Angarita-Rodríguez, Yeimy González-Giraldo, Juan J. Rubio-Mesa, Andrés Felipe Aristizábal, Andrés Pinzón, Janneth González. Control Theory and Systems Biology: Potential Applications in Neurodegeneration and Search for Therapeutic Targets. International Journal of Molecular Sciences 2023; 25(1): 365 doi: 10.3390/ijms25010365
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15 |
Betül Asiye Karpuzcu, Erdem Türk, Ahmad Hassan Ibrahim, Onur Can Karabulut, Barış Ethem Süzek. Protein-Protein Interactions. Methods in Molecular Biology 2023; 2690: 401 doi: 10.1007/978-1-0716-3327-4_31
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16 |
Nitish Rai, Namita Ashish Singh, Vivek Jain, Preet Jain, Alexander Choi, Saurabh K. Sinha. Systems Biology Approaches: Prevention, Diagnosis, and Understanding Mechanisms of Complex Diseases. 2024; : 1 doi: 10.1007/978-981-99-9462-5_1
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17 |
David Villar-Álvarez, Mikhail Oliveira Leastro, Vicente Pallas, Jesús Ángel Sánchez-Navarro. Identification of Host Factors Interacting with Movement Proteins of the 30K Family in Nicotiana tabacum. International Journal of Molecular Sciences 2024; 25(22): 12251 doi: 10.3390/ijms252212251
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18 |
Huimin Chen, Jiaxin Liu, Gege Tang, Gefei Hao, Guangfu Yang, Yu Xue. Bioinformatic Resources for Exploring Human–virus Protein–protein Interactions Based on Binding Modes. Genomics, Proteomics & Bioinformatics 2024; 22(5) doi: 10.1093/gpbjnl/qzae075
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19 |
Network pharmacology and molecular docking insights into Sirtuin-2 inhibitors (AK-7 and AGK-2): A synergistic strategy for COPD treatment. Human Gene 2025; 43: 201360 doi: 10.1016/j.humgen.2024.201360
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20 |
Irene Kai Ru Tiong, Cher Chien Lau, Mimi Iryani Mat Taib, Khor Waiho, Patrick Sorgeloos, Yeong Yik Sung. Artemia as a model organism in stress response studies: current progress and future prospects. Marine Biology 2025; 172(1) doi: 10.1007/s00227-024-04569-1
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21 |
Sama Akbarzadeh, Özlem Coşkun, Başak Günçer. Studying protein–protein interactions: Latest and most popular approaches. Journal of Structural Biology 2024; 216(4): 108118 doi: 10.1016/j.jsb.2024.108118
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22 |
Bugude Laxmi, Palempalli Uma Maheswari Devi, Naveen Thanjavur, Viswanath Buddolla. The Applications of Artificial Intelligence (AI)-Driven Tools in Virus-Like Particles (VLPs) Research. Current Microbiology 2024; 81(8) doi: 10.1007/s00284-024-03750-5
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23 |
Preeti Thareja, Rajender Singh Chhillar, Sandeep Dalal, Sarita Simaiya, Umesh Kumar Lilhore, Roobaea Alroobaea, Majed Alsafyani, Abdullah M. Baqasah, Sultan Algarni. Intelligence model on sequence-based prediction of PPI using AISSO deep concept with hyperparameter tuning process. Scientific Reports 2024; 14(1) doi: 10.1038/s41598-024-72558-x
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24 |
Hong Yu, Li Li, Anthony Huffman, John Beverley, Junguk Hur, Eric Merrell, Hsin-hui Huang, Yang Wang, Yingtong Liu, Edison Ong, Liang Cheng, Tao Zeng, Jingsong Zhang, Pengpai Li, Zhiping Liu, Zhigang Wang, Xiangyan Zhang, Xianwei Ye, Samuel K. Handelman, Jonathan Sexton, Kathryn Eaton, Gerry Higgins, Gilbert S. Omenn, Brian Athey, Barry Smith, Luonan Chen, Yongqun He. A new framework for host-pathogen interaction research. Frontiers in Immunology 2022; 13 doi: 10.3389/fimmu.2022.1066733
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25 |
Tingting Shu, Yan Zhang, Tong Sun, Yunxia Zhu. Polypeptide N-Acetylgalactosaminyl transferase 14 is a novel mediator in pancreatic β-cell function and growth. Molecular and Cellular Endocrinology 2024; 591: 112269 doi: 10.1016/j.mce.2024.112269
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26 |
Luiza de Oliveira Possa, Maria Roméria da Silva, Larissa Cassemiro Pacheco Monteiro, Ramila Cristiane Rodrigues, Renato Lima Senra, Tiago Antônio de Oliveira Mendes. Characterization of Molecular Interactions. Methods and Protocols in Food Science 2025; : 105 doi: 10.1007/978-1-0716-4294-8_8
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27 |
Interaction of DL-Valine/DL-Serine with Cationic and Anionic Surfactants in Aqueous Media: Volumetric, UV-visible Spectroscopic, and Conductometric Studies. Colloid Journal 2024; 86(4): 588 doi: 10.1134/S1061933X2460009X
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28 |
Yashoda N. Tripathi, Vinay K. Singh, Sunil Kumar, Vaishali Shukla, Mukesh Yadav, Ram S. Upadhyay. Identification of hub genes and potential networks by centrality network analysis of PCR amplified Fusarium oxysporum f. sp. lycopersici EF1α gene. BMC Microbiology 2024; 24(1) doi: 10.1186/s12866-024-03434-x
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29 |
Alexandra N. Filiatraut, Jaber R. Mianroodi, Nima H. Siboni, Mehdi B. Zanjani. Predicting micro/nanoscale colloidal interactions through local neighborhood graph neural networks. Journal of Applied Physics 2023; 134(23) doi: 10.1063/5.0175062
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30 |
Kaniha Sivakumar, Usha Subbiah. Computational analysis of non-synonymous SNPs in the human LCN2 gene. Egyptian Journal of Medical Human Genetics 2024; 25(1) doi: 10.1186/s43042-024-00565-8
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31 |
Andrea Becchimanzi, Giovanna De Leva, Rosanna Mattossovich, Serena Camerini, Marialuisa Casella, Giovanni Jesu, Ilaria Di Lelio, Sabrina Di Giorgi, Joachim R. de Miranda, Anna Valenti, Silvia Gigliotti, Francesco Pennacchio. Deformed wing virus coopts the host arginine kinase to enhance its fitness in honey bees (Apis mellifera). BMC Biology 2025; 23(1) doi: 10.1186/s12915-025-02117-x
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32 |
Binghua Li, Xin Li, Xiaoyu Li, Li Wang, Jun Lu, Jia Wang. Prediction of influenza A virus-human protein-protein interactions using XGBoost with continuous and discontinuous amino acids information. PeerJ 2025; 13: e18863 doi: 10.7717/peerj.18863
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