BPG is committed to discovery and dissemination of knowledge
Cited by in CrossRef
For: Martinez-Medina M, Garcia-Gil LJ. Escherichia coli in chronic inflammatory bowel diseases: An update on adherent invasive Escherichia coli pathogenicity. World J Gastrointest Pathophysiol 2014; 5(3): 213-227 [PMID: 25133024 DOI: 10.4291/wjgp.v5.i3.213]
URL: https://www.wjgnet.com/2150-5330/full/v5/i3/213.htm
Number Citing Articles
1
Magdalena Pilarczyk-Zurek, Magdalena Strus, Pawel Adamski, Piotr B. Heczko. The dual role of Escherichia coli in the course of ulcerative colitisBMC Gastroenterology 2016; 16(1) doi: 10.1186/s12876-016-0540-2
2
Jean-Félix Sicard, Philippe Vogeleer, Guillaume Le Bihan, Yaindrys Rodriguez Olivera, Francis Beaudry, Mario Jacques, Josée Harel. N-Acetyl-glucosamine influences the biofilm formation of Escherichia coliGut Pathogens 2018; 10(1) doi: 10.1186/s13099-018-0252-y
3
Qi Zhang, Xueqing Duan, Rui Chen, Zhixuan Duan, Chen Zhu, Qi Yu, Weiyi Tian. Effects of Cortex meliae on the Intestinal Flora in RatsJournal of Biobased Materials and Bioenergy 2023; 17(6): 742 doi: 10.1166/jbmb.2023.2323
4
Laurel K. Mydock-McGrane, Zachary T. Cusumano, James W. Janetka. Mannose-derived FimH antagonists: a promising anti-virulence therapeutic strategy for urinary tract infections and Crohn’s diseaseExpert Opinion on Therapeutic Patents 2016; 26(2): 175 doi: 10.1517/13543776.2016.1131266
5
Alejandro Cabezas-Cruz, Luis G. Bermúdez-Humarán. Exploring the relationship between Faecalibacterium duncaniae and Escherichia coli in inflammatory bowel disease (IBD): Insights and implicationsComputational and Structural Biotechnology Journal 2024; 23: 1 doi: 10.1016/j.csbj.2023.11.027
6
Ram Hari Dahal, Yoon-Jung Choi, Shukho Kim, Jungmin Kim. Differentiation of Escherichia fergusonii and Escherichia coli Isolated from Patients with Inflammatory Bowel Disease/Ischemic Colitis and Their Antimicrobial Susceptibility PatternsAntibiotics 2023; 12(1): 154 doi: 10.3390/antibiotics12010154
7
Olga V. Pobeguts, Maria A. Galyamina, Elena V. Mikhalchik, Sergey I. Kovalchuk, Igor P. Smirnov, Alena V. Lee, Lyubov Yu. Filatova, Kirill V. Sikamov, Oleg M. Panasenko, Alexey Yu. Gorbachev. The Role of Propionate-Induced Rearrangement of Membrane Proteins in the Formation of the Virulent Phenotype of Crohn’s Disease-Associated Adherent-Invasive Escherichia coliInternational Journal of Molecular Sciences 2024; 25(18): 10118 doi: 10.3390/ijms251810118
8
Luis Cabrera-Sosa, Theresa J. Ochoa. Hunter's Tropical Medicine and Emerging Infectious Diseases2020; : 481 doi: 10.1016/B978-0-323-55512-8.00046-6
9
Claudia F. Martinez de la Peña, Glen D. Armstrong, Margarita M. P. Arenas-Hernández, Roberto J. Cieza. Escherichia coli in the Americas2016; : 281 doi: 10.1007/978-3-319-45092-6_12
10
Grégoire Chevalier, Arnaud Laveissière, Guillaume Desachy, Nicolas Barnich, Adeline Sivignon, Marc Maresca, Cendrine Nicoletti, Eric Di Pasquale, Margarita Martinez-Medina, Kenneth William Simpson, Vijay Yajnik, Harry Sokol, Temitayo Adegbamigbe, Tariq Ahmad, Ian Arnott, Yoram Bouhnik, Franck Carbonnel, Jean-Frédéric Colombel, Glen Doherty, J. R. Fraser Cummings, Xavier Hébuterne, Hans Herfarth, David Kevans, Guillaume Pineton de Chambrun, Maria Nachury, Stéphane Nancey, Xavier Roblin, Mark A. W. Tremelling, Jonathan Plassais, Francesco Strozzi, Alessandra Cervino, Rachel Morra, Christophe Bonny. Blockage of bacterial FimH prevents mucosal inflammation associated with Crohn’s diseaseMicrobiome 2021; 9(1) doi: 10.1186/s40168-021-01135-5
11
Cherrie L. Small, Lydia Xing, Joseph B. McPhee, Hong T. Law, Brian K. Coombes, Andreas J Baumler. Acute Infectious Gastroenteritis Potentiates a Crohn's Disease Pathobiont to Fuel Ongoing Inflammation in the Post-Infectious PeriodPLOS Pathogens 2016; 12(10): e1005907 doi: 10.1371/journal.ppat.1005907
12
Yun Ji, Xiaoxiao Fan, Yunchang Zhang, Ju Li, Zhaolai Dai, Zhenlong Wu. Glycine regulates mucosal immunity and the intestinal microbial composition in weaned pigletsAmino Acids 2022; 54(3): 385 doi: 10.1007/s00726-021-02976-y
13
Aarti Yadav, S. Hamsa, Ruby Tiwari, Asha Bharti, Tejpal Dhewa, Rekha Mehrotra, Preeti Verma. Nutritional Science and Technology2023; : 63 doi: 10.1002/9781394229116.ch3
14
Shahanavaj Khan. Potential role of Escherichia coli DNA mismatch repair proteins in colon cancerCritical Reviews in Oncology/Hematology 2015; 96(3): 475 doi: 10.1016/j.critrevonc.2015.05.002
15
Youlian Zhou, Yan He, Le Liu, Wanyan Zhou, Pu Wang, Han Hu, Yuqiang Nie, Ye Chen. Alterations in Gut Microbial Communities Across Anatomical Locations in Inflammatory Bowel DiseasesFrontiers in Nutrition 2021; 8 doi: 10.3389/fnut.2021.615064
16
R. B. Gorodnichev, D. V. Rakitina, A. I. Manolov, Yu. P. Baykova, P. L. Scherbakov, G. B. Smirnov, E. N. Ilina. FEATURES OF ESCHERICHIA COLI CLINICAL STRAINS, ISOLATED FROM THE PATIENTS WITH CROHN’S DISEASEJournal of microbiology, epidemiology and immunobiology 2017; 94(6): 42 doi: 10.36233/0372-9311-2017-6-42-49
17
Valerio Iebba. Methods in Cell Biology 2024;  doi: 10.1016/bs.mcb.2024.08.011
18
Johanne Ahrenfeldt, Madina Waisi, Isabella C. Loft, Philip T. L. C. Clausen, Rosa Allesøe, Judit Szarvas, Rene S. Hendriksen, Frank M. Aarestrup, Ole Lund. Metaphylogenetic analysis of global sewage reveals that bacterial strains associated with human disease show less degree of geographic clusteringScientific Reports 2020; 10(1) doi: 10.1038/s41598-020-59292-w
19
Razie Kamali Dolatabadi, Hossein Fazeli, Mohammad Hassan Emami, Vajihe Karbasizade, Fatemeh Maghool, Alireza Fahim, Hojatollah Rahimi. Phenotypicand Genotypic Characterization of Clinical Isolates of Intracellular Adherent–Invasive Escherichia coli Among Different Stages, Family History, and Treated Colorectal Cancer Patients in IranFrontiers in Cellular and Infection Microbiology 2022; 12 doi: 10.3389/fcimb.2022.938477
20
Mostafa Vaghari-Tabari, Forough Alemi, Maryam Zokaei, Soheila Moein, Durdi Qujeq, Bahman Yousefi, Payam Farzami, Seyed Soheil Hosseininasab. Polyphenols and inflammatory bowel disease: Natural products with therapeutic effects?Critical Reviews in Food Science and Nutrition 2024; 64(13): 4155 doi: 10.1080/10408398.2022.2139222
21
Abiel Roche-Lima, Kelvin Carrasquillo-Carrión, Ramón Gómez-Moreno, Juan M. Cruz, Dayanara M. Velázquez-Morales, Igor B. Rogozin, Abel Baerga-Ortiz. The Presence of Genotoxic and/or Pro-inflammatory Bacterial Genes in Gut Metagenomic Databases and Their Possible Link With Inflammatory Bowel DiseasesFrontiers in Genetics 2018; 9 doi: 10.3389/fgene.2018.00116
22
Lucie Gibold, Estelle Garenaux, Guillaume Dalmasso, Camille Gallucci, David Cia, Benoit Mottet-Auselo, Tiphanie Faïs, Arlette Darfeuille-Michaud, Hang Thi Thu Nguyen, Nicolas Barnich, Richard Bonnet, Julien Delmas. The Vat-AIEC protease promotes crossing of the intestinal mucus layer by Crohn's disease-associatedEscherichia coliCellular Microbiology 2016; 18(5): 617 doi: 10.1111/cmi.12539
23
Asuka Yasueda, Tsunekazu Mizushima, Riichiro Nezu, Ryoko Sumi, Mamoru Tanaka, Junichi Nishimura, Yasuyuki Kai, Masaki Hirota, Hideki Osawa, Kiyokazu Nakajima, Masaki Mori, Toshinori Ito. The effect of Clostridium butyricum MIYAIRI on the prevention of pouchitis and alteration of the microbiota profile in patients with ulcerative colitisSurgery Today 2016; 46(8): 939 doi: 10.1007/s00595-015-1261-9
24
Nour Eissa, Hatem Kittana, João Carlos Gomes-Neto, Hayam Hussein. Mucosal immunity and gut microbiota in dogs with chronic enteropathyResearch in Veterinary Science 2019; 122: 156 doi: 10.1016/j.rvsc.2018.11.019
25
Michael J. Ormsby, Michael Logan, Síle A. Johnson, Anne McIntosh, Ghaith Fallata, Rodanthi Papadopoulou, Eleftheria Papachristou, Georgina L. Hold, Richard Hansen, Umer Z. Ijaz, Richard K. Russell, Konstantinos Gerasimidis, Daniel M. Wall. Inflammation associated ethanolamine facilitates infection by Crohn's disease-linked adherent-invasive Escherichia coliEBioMedicine 2019; 43: 325 doi: 10.1016/j.ebiom.2019.03.071
26
J. Vila, E. Sáez-López, J. R. Johnson, U. Römling, U. Dobrindt, R. Cantón, C. G. Giske, T. Naas, A. Carattoli, M. Martínez-Medina, J. Bosch, P. Retamar, J. Rodríguez-Baño, F. Baquero, S. M. Soto, Kenn Gerdes. Escherichia coli: an old friend with new tidingsFEMS Microbiology Reviews 2016; 40(4): 437 doi: 10.1093/femsre/fuw005
27
Carolina Palmela, Caroline Chevarin, Zhilu Xu, Joana Torres, Gwladys Sevrin, Robert Hirten, Nicolas Barnich, Siew C Ng, Jean-Frederic Colombel. Adherent-invasive Escherichia coli in inflammatory bowel diseaseGut 2018; 67(3): 574 doi: 10.1136/gutjnl-2017-314903
28
Ronald D. Hills Jr., Benjamin A. Pontefract, Hillary R. Mishcon, Cody A. Black, Steven C. Sutton, Cory R. Theberge. Gut Microbiome: Profound Implications for Diet and DiseaseKompass Nutrition & Dietetics 2022; : 1 doi: 10.1159/000523712
29
Indah Salsabila, Khairan Khairan, Pati Kemala, Ghifari Maulana Idroes, Nadia Isnaini, Nur Balqis Maulydia, Mohamed El-Shazly, Rinaldi Idroes. Hybrid Handwash with Silver Nanoparticles from Calotropis gigantea Leaves and Patchouli Oil: Development and PropertiesMalacca Pharmaceutics 2024; 2(2): 52 doi: 10.60084/mp.v2i2.206
30
Jody Andersen, Gui-Xin He, Prathusha Kakarla, Ranjana KC, Sanath Kumar, Wazir Lakra, Mun Mukherjee, Indrika Ranaweera, Ugina Shrestha, Thuy Tran, Manuel Varela. Multidrug Efflux Pumps from Enterobacteriaceae, Vibrio cholerae and Staphylococcus aureus Bacterial Food PathogensInternational Journal of Environmental Research and Public Health 2015; 12(2): 1487 doi: 10.3390/ijerph120201487
31
Husamettin Aygun, Murat Karamese, Cem Ozic, Fikret Uyar. The Effects of Mucosal Media on some Pathogenic Traits of Crohn's Disease-Associated Escherichia Coli LF82 Future Microbiology 2018; 13(2): 141 doi: 10.2217/fmb-2017-0133
32
Mireia López-Siles, Carla Camprubí-Font, Eva M. Gómez del Pulgar, Miriam Sabat Mir, David Busquets, Yolanda Sanz, Margarita Martinez-Medina. Prevalence, Abundance, and Virulence of Adherent-Invasive Escherichia coli in Ulcerative Colitis, Colorectal Cancer, and Coeliac DiseaseFrontiers in Immunology 2022; 13 doi: 10.3389/fimmu.2022.748839
33
Michael A. Polewski, Daniel Esquivel-Alvarado, Nicholas S. Wedde, Christian G. Kruger, Jess D. Reed. Isolation and Characterization of Blueberry Polyphenolic Components and Their Effects on Gut Barrier DysfunctionJournal of Agricultural and Food Chemistry 2020; 68(10): 2940 doi: 10.1021/acs.jafc.9b01689
34
Zeus Saldaña-Ahuactzi, Jorge Soria-Bustos, Verónica I. Martínez-Santos, Jorge A. Yañez-Santos, Ygnacio Martínez-Laguna, María Lilia Cedillo-Ramirez, José L. Puente, Jorge A. Girón. The Fis Nucleoid Protein Negatively Regulates the Phase Variation fimS Switch of the Type 1 Pilus Operon in Enteropathogenic Escherichia coliFrontiers in Microbiology 2022; 13 doi: 10.3389/fmicb.2022.882563
35
Xin Fang, Jonathan M. Monk, Sergey Nurk, Margarita Akseshina, Qiyun Zhu, Christopher Gemmell, Connor Gianetto-Hill, Nelly Leung, Richard Szubin, Jon Sanders, Paul L. Beck, Weizhong Li, William J. Sandborn, Scott D. Gray-Owen, Rob Knight, Emma Allen-Vercoe, Bernhard O. Palsson, Larry Smarr. Metagenomics-Based, Strain-Level Analysis of Escherichia coli From a Time-Series of Microbiome Samples From a Crohn's Disease PatientFrontiers in Microbiology 2018; 9 doi: 10.3389/fmicb.2018.02559
36
Lacey R. Lopez, Cassandra J. Barlogio, Christopher A. Broberg, Jeremy Wang, Janelle C. Arthur. A nadA Mutation Confers Nicotinic Acid Auxotrophy in Pro-carcinogenic Intestinal Escherichia coli NC101Frontiers in Microbiology 2021; 12 doi: 10.3389/fmicb.2021.670005
37
Maitham Abbas Khajah. The potential role of fecal microbiota transplantation in the treatment of inflammatory Bowel diseaseScandinavian Journal of Gastroenterology 2017; 52(11): 1172 doi: 10.1080/00365521.2017.1347812
38
Souhir Badi, Rim Werheni Ammeri, Mohamed Salah Abbassi, Mejdi Snousssi, Paola Cremosini, Mario Luini, Bianca Castiglioni, Abdennaceur Hassen. Study of the diversity of 16S–23S rDNA internal transcribed spacer (ITS) typing of Escherichia coli strains isolated from various biotopes in TunisiaArchives of Microbiology 2022; 204(1) doi: 10.1007/s00203-021-02684-x
39
Qianjin Lu, Yue Xin. The Rose and Mackay Textbook of Autoimmune Diseases2024; : 71 doi: 10.1016/B978-0-443-23947-2.00008-4
40
A. Butera, M. Di Paola, L. Pavarini, F. Strati, M. Pindo, M. Sanchez, D. Cavalieri, M. Boirivant, C. De Filippo. Nod2 Deficiency in mice is Associated with Microbiota Variation Favouring the Expansion of mucosal CD4+ LAP+ Regulatory CellsScientific Reports 2018; 8(1) doi: 10.1038/s41598-018-32583-z
41
Charles O Elson. Adherent invasiveEscherichia coliin Crohn’s disease: guilt by association?Gut 2023; 72(1): 2 doi: 10.1136/gutjnl-2022-327342
42
Mariam Moshkovskaya, Tatyana Vakhrusheva, Daria Rakitina, Julia Baykova, Oleg Panasenko, Lilia Basyreva, Sergey Gusev, Alexander Gusev, Elena Mikhalchik, Natalia Smolina, Gennadiy Dobretsov, Petr Scherbakov, Asfold Parfenov, Nina Fadeeva, Olga Pobeguts, Vadim Govorun. Neutrophil activation by Escherichia coli isolates from human intestine: effects of bacterial hydroperoxidase activity and surface hydrophobicityFEBS Open Bio 2020; 10(3): 414 doi: 10.1002/2211-5463.12796
43
Yongshun Ma, Yao Zhang, Houxiang Jiang, Shixin Xiang, Yueshui Zhao, Mintao Xiao, Fukuan Du, Huijiao Ji, Parham Jabbarzadeh Kaboli, Xu Wu, Mingxing Li, Qinglian Wen, Jing Shen, Zhongming Yang, Jing Li, Zhangang Xiao. Metagenome Analysis of Intestinal Bacteria in Healthy People, Patients With Inflammatory Bowel Disease and Colorectal CancerFrontiers in Cellular and Infection Microbiology 2021; 11 doi: 10.3389/fcimb.2021.599734
44
Filippo Vaccari, Leilei Zhang, Gianluca Giuberti, Alfina Grasso, Francesca Bandini, Pascual García-Pérez, Chiara Copat, Luigi Lucini, Margherita Dall’Asta, Margherita Ferrante, Edoardo Puglisi. The impact of metallic nanoparticles on gut fermentation processes: An integrated metabolomics and metagenomics approach following an in vitro digestion and fecal fermentation modelJournal of Hazardous Materials 2023; 453: 131331 doi: 10.1016/j.jhazmat.2023.131331
45
Bahareh Vakili, Parisa Shoaei, Zahra Esfandiari, Seyed Davar Siadat. Effect of Microbiota on Health and Disease2022;  doi: 10.5772/intechopen.105842
46
Tomas Hudcovic, Petra Petr Hermanova, Hana Kozakova, Oldrich Benada, Olga Kofronova, Martin Schwarzer, Dagmar Srutkova. Priority order of neonatal colonization by a probiotic or pathogenic Escherichia coli strain dictates the host response to experimental colitisFrontiers in Microbiology 2024; 15 doi: 10.3389/fmicb.2024.1393732
47
Suprabhat Mukherjee, Nikhilesh Joardar, Subhasree Sengupta, Santi P. Sinha Babu. Gut microbes as future therapeutics in treating inflammatory and infectious diseases: Lessons from recent findingsThe Journal of Nutritional Biochemistry 2018; 61: 111 doi: 10.1016/j.jnutbio.2018.07.010
48
Xiao-Pei Peng, Wei Ding, Jian-Min Ma, Jie Zhang, Jian Sun, Yun Cao, Li-Hui Lei, Jinshan Zhao, Yun-Fu Li. Effect of Escherichia Coli Infection on Metabolism of Dietary Protein in IntestineCurrent Protein & Peptide Science 2020; 21(8): 772 doi: 10.2174/1389203720666191113144049
49
Margarita Martinez-Medina, L Jesús Garcia-Gil, Harry J Flint, Sylvia H Duncan, Mariona Serra-Pagès, Miriam Sabat-Mir, Xavier Aldeguer, Mireia Lopez-Siles. Evaluation of bacterial biomarkers to aid in challenging inflammatory bowel diseases diagnostics and subtype classificationWorld Journal of Gastrointestinal Pathophysiology 2020; 11(3): 64-77 doi: 10.4291/wjgp.v11.i3.64
50
A. V. Zhestkov, Yu. A. Khalitova, Yu. V. Myakisheva. The role of the microbiota of the gastrointestinal tract in the pathogenesis of inflammatory bowel diseasesAstrakhan medical journal 2023; 18(3): 33 doi: 10.17021/1992-6499-2023-3-33-42
51
Zeshan Hassan, Ammara Hassan, Muhaiman Riaz, Azhar Abbas Khan, Sami Ul-Allah, Umbreen Shehzad, Muhammad Khurshid, Ali Bakhsh, Jawad Munawar Shah, Zahid Manzoor. Increased health risk assessment in different vegetables grown under untreated sewerage irrigation regime due to higher heavy metals accumulationEnvironmental Science and Pollution Research 2023; 30(36): 86189 doi: 10.1007/s11356-023-28413-z
52
Terence Van Raay, Emma Allen-Vercoe. Bugs as Drugs2018; : 99 doi: 10.1128/9781555819705.ch4
53
Nazanin Arjomand Fard, Heather Armstrong, Troy Perry, Eytan Wine. Appendix and Ulcerative Colitis: a Key to Explaining the Pathogenesis and Directing Novel Therapies?Inflammatory Bowel Diseases 2023; 29(1): 151 doi: 10.1093/ibd/izac106
54
Jessica K. Jarett, Dawn D. Kingsbury, Katherine E. Dahlhausen, Holly H. Ganz. Best Practices for Microbiome Study Design in Companion Animal ResearchFrontiers in Veterinary Science 2021; 8 doi: 10.3389/fvets.2021.644836
55
Qianyu Li, Siyu Zhou, Yanna Wang, Jing Cong. Changes of intestinal microbiota and microbiota-based treatments in IBDArchives of Microbiology 2022; 204(7) doi: 10.1007/s00203-022-03069-4
56
Rodrick J. Chiodini, Scot E. Dowd, William M. Chamberlin, Susan Galandiuk, Brian Davis, Angela Glassing, Hauke Smidt. Microbial Population Differentials between Mucosal and Submucosal Intestinal Tissues in Advanced Crohn's Disease of the IleumPLOS ONE 2015; 10(7): e0134382 doi: 10.1371/journal.pone.0134382
57
Lauren C. Chartier, Gordon S. Howarth, Suzanne Mashtoub. Combined Nutraceuticals: A Novel Approach to Colitis-Associated Colorectal Cancer?Nutrition and Cancer 2019; 71(2): 199 doi: 10.1080/01635581.2019.1578391
58
Dongyue Li, Youlin Yang, Xunhai Yin, Yang Liu, Hongyu Xu, Yu Ni, Ping Hang, Sijia Niu, Huichao Zhang, Wenbo Ding, Hongyu Kuang. Glucagon-like peptide (GLP) -2 improved colonizing bacteria and reduced severity of ulcerative colitis by enhancing the diversity and abundance of intestinal mucosaBioengineered 2021; 12(1): 5195 doi: 10.1080/21655979.2021.1958600
59
Ashley Gilliland, Jocelyn J. Chan, Travis J. De Wolfe, Hyungjun Yang, Bruce A. Vallance. Pathobionts in Inflammatory Bowel Disease: Origins, Underlying Mechanisms, and Implications for Clinical CareGastroenterology 2024; 166(1): 44 doi: 10.1053/j.gastro.2023.09.019
60
Pauline D. Scanlan, Fernando Baquero, Bruce R. Levin. Short-sighted evolution of virulence for invasive gut microbes: From hypothesis to testsProceedings of the National Academy of Sciences 2024; 121(49) doi: 10.1073/pnas.2409905121
61
Shiying Zhang, Belgin Dogan, Cindy Guo, Deepali Herlekar, Katrina Stewart, Ellen J. Scherl, Kenneth W. Simpson. Short Chain Fatty Acids Modulate the Growth and Virulence of Pathosymbiont Escherichia coli and Host ResponseAntibiotics 2020; 9(8): 462 doi: 10.3390/antibiotics9080462
62
Aida Mayorgas, Isabella Dotti, Marta Martínez-Picola, Miriam Esteller, Queralt Bonet-Rossinyol, Elena Ricart, Azucena Salas, Margarita Martínez-Medina. A Novel Strategy to Study the Invasive Capability of Adherent-Invasive Escherichia coli by Using Human Primary Organoid-Derived Epithelial MonolayersFrontiers in Immunology 2021; 12 doi: 10.3389/fimmu.2021.646906
63
Zhaohua Shen, Changxin Zhu, Yongsheng Quan, Wei Yuan, Shuai Wu, Zhenyu Yang, Weiwei Luo, Bei Tan, Xiaoyan Wang. Update on intestinal microbiota in Crohn's disease 2017: Mechanisms, clinical application, adverse reactions, and outlookJournal of Gastroenterology and Hepatology 2017; 32(11): 1804 doi: 10.1111/jgh.13861
64
Jeffrey B Blumberg, Arpita Basu, Christian G Krueger, Mary Ann Lila, Catherine C Neto, Janet A Novotny, Jess D Reed, Ana Rodriguez-Mateos, Cheryl D Toner. Impact of Cranberries on Gut Microbiota and Cardiometabolic Health: Proceedings of the Cranberry Health Research Conference 2015Advances in Nutrition 2016; 7(4): 759S doi: 10.3945/an.116.012583
65
Jun-Hwan Yoo, Mark Donowitz. Intestinal enteroids/organoids: A novel platform for drug discovery in inflammatory bowel diseasesWorld Journal of Gastroenterology 2019; 25(30): 4125-4147 doi: 10.3748/wjg.v25.i30.4125
66
Lina Y Alkaissi, Martin E Winberg, Stéphanie D S Heil, Staffan Haapaniemi, Pär Myrelid, Eduard F Stange, Johan D Söderholm, Åsa V Keita. Antagonism of Adherent Invasive E. coli LF82 With Human α-defensin 5 in the Follicle-associated Epithelium of Patients With Ileal Crohn’s DiseaseInflammatory Bowel Diseases 2021; 27(7): 1116 doi: 10.1093/ibd/izaa315
67
Jaekoo Lee, Jaehyun Jo, Jungho Wan, Hanseul Seo, Seung-Won Han, Yoon-Jung Shin, Dong-Hyun Kim. In Vitro Evaluation of Probiotic Properties and Anti-Pathogenic Effects of Lactobacillus and Bifidobacterium Strains as Potential ProbioticsFoods 2024; 13(14): 2301 doi: 10.3390/foods13142301
68
Ronald Hills, Benjamin Pontefract, Hillary Mishcon, Cody Black, Steven Sutton, Cory Theberge. Gut Microbiome: Profound Implications for Diet and DiseaseNutrients 2019; 11(7): 1613 doi: 10.3390/nu11071613
69
Andrew Brantley Hall, Moran Yassour, Jenny Sauk, Ashley Garner, Xiaofang Jiang, Timothy Arthur, Georgia K. Lagoudas, Tommi Vatanen, Nadine Fornelos, Robin Wilson, Madeline Bertha, Melissa Cohen, John Garber, Hamed Khalili, Dirk Gevers, Ashwin N. Ananthakrishnan, Subra Kugathasan, Eric S. Lander, Paul Blainey, Hera Vlamakis, Ramnik J. Xavier, Curtis Huttenhower. A novel Ruminococcus gnavus clade enriched in inflammatory bowel disease patientsGenome Medicine 2017; 9(1) doi: 10.1186/s13073-017-0490-5
70
Kostas Koutsoumanis, Ana Allende, Avelino Alvarez‐Ordóñez, Sara Bover‐Cid, Marianne Chemaly, Robert Davies, Alessandra De Cesare, Lieve Herman, Friederike Hilbert, Roland Lindqvist, Maarten Nauta, Luisa Peixe, Giuseppe Ru, Marion Simmons, Panagiotis Skandamis, Elisabetta Suffredini, Claire Jenkins, Sara Monteiro Pires, Stefano Morabito, Taina Niskanen, Flemming Scheutz, Maria Teresa da Silva Felício, Winy Messens, Declan Bolton. Pathogenicity assessment of Shiga toxin‐producing Escherichia coli (STEC) and the public health risk posed by contamination of food with STECEFSA Journal 2020; 18(1) doi: 10.2903/j.efsa.2020.5967
71
Ying Chen, Wenda Zhou, Terrence Roh, Mary K. Estes, David L. Kaplan, Shree Ram Singh. In vitro enteroid-derived three-dimensional tissue model of human small intestinal epithelium with innate immune responsesPLOS ONE 2017; 12(11): e0187880 doi: 10.1371/journal.pone.0187880
72
Jia-hua Kuang, Yan-yan Huang, Jin-shuang Hu, Jia-jia Yu, Qin-yu Zhou, Dong-mei Liu. Exopolysaccharides from Bacillus amyloliquefaciens DMBA-K4 ameliorate dextran sodium sulfate-induced colitis via gut microbiota modulationJournal of Functional Foods 2020; 75: 104212 doi: 10.1016/j.jff.2020.104212
73
Roghayeh Shahbazi, Hamed Yasavoli-Sharahi, Jean-François Mallet, Farzaneh Sharifzad, Nawal Alsadi, Cyrille Cuenin, Vincent Cahais, Felicia Fei-Lei Chung, Zdenko Herceg, Chantal Matar. Novel Probiotic Bacterium Rouxiella badensis subsp. acadiensis (Canan SV-53) Modulates Gut Immunity through Epigenetic MechanismsMicroorganisms 2023; 11(10): 2456 doi: 10.3390/microorganisms11102456
74
Julia Manasson, Nan Shen, Helga R. Garcia Ferrer, Carles Ubeda, Isa Iraheta, Adriana Heguy, Joan M. Von Feldt, Luis R. Espinoza, Abraham Garcia Kutzbach, Leopoldo N. Segal, Alexis Ogdie, Jose C. Clemente, Jose U. Scher. Gut Microbiota Perturbations in Reactive Arthritis and Postinfectious SpondyloarthritisArthritis & Rheumatology 2018; 70(2): 242 doi: 10.1002/art.40359
75
Mauricio Javier Olivares-Morales, Marjorie Katherine De La Fuente, Karen Dubois-Camacho, Daniela Parada, David Diaz-Jiménez, Alejandro Torres-Riquelme, Xiaojiang Xu, Nayaret Chamorro-Veloso, Rodrigo Naves, Maria-Julieta Gonzalez, Rodrigo Quera, Carolina Figueroa, John Anthony Cidlowski, Roberto Mauricio Vidal, Marcela Alejandra Hermoso. Glucocorticoids Impair Phagocytosis and Inflammatory Response Against Crohn’s Disease-Associated Adherent-Invasive Escherichia coliFrontiers in Immunology 2018; 9 doi: 10.3389/fimmu.2018.01026
76
Melanie Schirmer, Ashley Garner, Hera Vlamakis, Ramnik J. Xavier. Microbial genes and pathways in inflammatory bowel diseaseNature Reviews Microbiology 2019; 17(8): 497 doi: 10.1038/s41579-019-0213-6
77
Shuiqing Hu, Lan Peng, Youn-Tae Kwak, Erin McElvania Tekippe, Chandrashekhar Pasare, James S. Malter, Lora V. Hooper, Md. Hasan Zaki. The DNA Sensor AIM2 Maintains Intestinal Homeostasis via Regulation of Epithelial Antimicrobial Host DefenseCell Reports 2015; 13(9): 1922 doi: 10.1016/j.celrep.2015.10.040
78
Nicolas Dufour, Laurent Debarbieux. La phagothérapiemédecine/sciences 2017; 33(4): 410 doi: 10.1051/medsci/20173304011
79
Isa Seida, Zeynep Betul Balcioglu, Kamyar Neyestani, Naim Mahroum. Infection and Autoimmunity2024; : 823 doi: 10.1016/B978-0-323-99130-8.00011-8
80
G. R. Bicbavova, M. A. Livzan, M. Yu. Lozinskaya. Pathogenetic factors of ulcerative colitis: mainstream for 2020Bulletin of Siberian Medicine 2021; 20(2): 130 doi: 10.20538/1682-0363-2021-2-130-138
81
Alessandra Graziottin, Sybil Lizanne R. Bravo, Ryan B. Capitulo, Agnes L. Soriano-Estrella, Mariles H. Nazal. Urogenital health and intimate hygiene practices among Filipino women of all ages: Key issues and insightsPhilippine Journal of Obstetrics and Gynecology 2024; 48(3): 131 doi: 10.4103/pjog.pjog_22_24
82
Rajalaksmy A. Ramachandran, Christopher Lupfer, Hasan Zaki. Nitric Oxide and Other Small Signalling MoleculesAdvances in Microbial Physiology 2018; 72: 65 doi: 10.1016/bs.ampbs.2018.01.004
83
Yage Bu, Lingli Feng, Di Xu, Shuai Zhang, Liang Liang, Jinglei Si, Yujie Lu, Qiaoling Liu, Gang Yan, Yubin Wang, Ganqiu Lan, Jing Liang. Changes in Gut Microbiota Associated with Parity in Large White SowsAnimals 2023; 14(1): 112 doi: 10.3390/ani14010112
84
Pierre Lapaquette, Jean Guzzo, Lionel Bretillon, Marie-Agnès Bringer, Dmitri V. Krysko. Cellular and Molecular Connections between Autophagy and InflammationMediators of Inflammation 2015; 2015(1) doi: 10.1155/2015/398483
85
Aina E. Fossum Moen, Jonas Christoffer Lindstrøm, Tone Møller Tannæs, Simen Vatn, Petr Ricanek, Morten H. Vatn, Jørgen Jahnsen, Anna B. Frengen, Fredrik A. Dahl, Panpan You, Janne Sølvernes, Gunn S. Ekeland, Trond E. Detlie, Christine Olbjørn, Kate R. O’Leary, Nicholas T. Ventham, Nicholas A. Kennedy, Rahul Kalla, Alex Adams, Hazel E. Drummond, Ray Boyapati, Elaine R. Nimmo, David C. Wilson, Jack Satsangi, Simon C. Heath, Marta Gut, Angelika Merkel, Monica Bayes, Ivo G. Gut, Åsa V. Keita, Johan D. Söderholm, Henrik Hjortswang, Adam Carstens, Daniel Bergemalm, Jonas Halfvarson, Erik Andersson, Mårten Lindqvist, Dirk Repsilber, Marieke Pierik, Daisy Jonkers, Fernando Gomollón, Mauro D’Amato, Leif Törkvist, Fredrik Hjelm, Mats Gullberg, Niklas Nordberg, Anette Ocklind, Erik Pettersson, Daniel Ekman, Mikael Sundell, Eddie Modig, Ferdinando Bonfiglio, Anne-Clémence Veillard, Renaud Schoemans, Dominique Poncelet, Céline Sabatel, Torbjørn Lindahl, Ewa Ciemniejewska, Christina Casén, Charles Lees, Colin L. Noble, Ian Arnott, Gwo-Tzer Ho, Alan G. Shand. The prevalence and transcriptional activity of the mucosal microbiota of ulcerative colitis patientsScientific Reports 2018; 8(1) doi: 10.1038/s41598-018-35243-4
86
Ali Shawki, Declan F. McCole. Mechanisms of Intestinal Epithelial Barrier Dysfunction by Adherent-Invasive Escherichia coliCellular and Molecular Gastroenterology and Hepatology 2017; 3(1): 41 doi: 10.1016/j.jcmgh.2016.10.004
87
Laurel Mydock-McGrane, Zachary Cusumano, Zhenfu Han, Jana Binkley, Maria Kostakioti, Thomas Hannan, Jerome S. Pinkner, Roger Klein, Vasilios Kalas, Jan Crowley, Nigam P. Rath, Scott J. Hultgren, James W. Janetka. Antivirulence C-Mannosides as Antibiotic-Sparing, Oral Therapeutics for Urinary Tract InfectionsJournal of Medicinal Chemistry 2016; 59(20): 9390 doi: 10.1021/acs.jmedchem.6b00948
88
Laila Aldars-García, Alicia C. Marin, María Chaparro, Javier P. Gisbert. The Interplay between Immune System and Microbiota in Inflammatory Bowel Disease: A Narrative ReviewInternational Journal of Molecular Sciences 2021; 22(6): 3076 doi: 10.3390/ijms22063076
89
Amr El-Sayed, Lotfi Aleya, Mohamed Kamel. Epigenetics and the role of nutraceuticals in health and diseaseEnvironmental Science and Pollution Research 2023; 30(11): 28480 doi: 10.1007/s11356-023-25236-w
90
Wen Zeng, Dong He, Yifan Xing, Junyu Liu, Nan Su, Chong Zhang, Yi Wang, Xinhui Xing. Internal connections between dietary intake and gut microbiota homeostasis in disease progression of ulcerative colitis: a reviewFood Science and Human Wellness 2021; 10(2): 119 doi: 10.1016/j.fshw.2021.02.016
91
Andrés Hurtado-Lorenzo, Jennifer L. Swantek. Emerging Therapeutic Targets and Drug Delivery Approaches in IBDAdvances in Pharmacology 2024; 101: 1 doi: 10.1016/bs.apha.2024.10.011
92
Manoj Kumar, Mathieu Garand, Souhaila Al Khodor. Integrating omics for a better understanding of Inflammatory Bowel Disease: a step towards personalized medicineJournal of Translational Medicine 2019; 17(1) doi: 10.1186/s12967-019-02174-1
93
Guojun Wu, Naisi Zhao, Chenhong Zhang, Yan Y. Lam, Liping Zhao. Guild-based analysis for understanding gut microbiome in human health and diseasesGenome Medicine 2021; 13(1) doi: 10.1186/s13073-021-00840-y
94
Yaping Sun, Xindi Zhang, Yanli Zhang, Yanpo Si, Bing Cao, Zengfu Shan. Research Progress of Intestinal Flora and Related DiseasesChinese medicine and natural products 2023; 3(03): e108 doi: 10.1055/s-0043-1774414
95
Shahanavaj Khan, Ahamad Imran, Abdul Malik, Anis Ahmad Chaudhary, Abdur Rub, Arif Tasleem Jan, Jakeera Begum Syed, Christian Rolfo. Bacterial imbalance and gut pathologies: Association and contribution of E. coli in inflammatory bowel diseaseCritical Reviews in Clinical Laboratory Sciences 2019; 56(1): 1 doi: 10.1080/10408363.2018.1517144
96
Xin Fang, Jonathan M. Monk, Nathan Mih, Bin Du, Anand V. Sastry, Erol Kavvas, Yara Seif, Larry Smarr, Bernhard O. Palsson. Escherichia coli B2 strains prevalent in inflammatory bowel disease patients have distinct metabolic capabilities that enable colonization of intestinal mucosaBMC Systems Biology 2018; 12(1) doi: 10.1186/s12918-018-0587-5
97
Arie Levine, Michal Kori, Jarek Kierkus, Rotem Sigall Boneh, Malgorzata Sladek, Johanna C Escher, Eytan Wine, Baruch Yerushalmi, Jorge Amil Dias, Ron Shaoul, Gigi Veereman Wauters, Mona Boaz, Guila Abitbol, Athos Bousvaros, Dan Turner. Azithromycin and metronidazole versus metronidazole-based therapy for the induction of remission in mild to moderate paediatric Crohn’s disease : a randomised controlled trialGut 2019; 68(2): 239 doi: 10.1136/gutjnl-2017-315199
98
Marie-Paule Vasson, Carla Domingues-Faria, Nicolas Goncalves-Mendes, Lamia Slimani, Jérémie Talvas, Ahmad Khalil. Des cibles tissulaires multiples pour la vitamine DPratiques en nutrition 2015; 11(41): 20 doi: 10.1016/j.pranut.2014.12.004
99
Adrian Szczepaniak, Jakub Fichna. Organometallic Compounds and Metal Complexes in Current and Future Treatments of Inflammatory Bowel Disease and Colorectal Cancer—a Critical ReviewBiomolecules 2019; 9(9): 398 doi: 10.3390/biom9090398
100
Rachel M. Bleich, Chuang Li, Shan Sun, Ju-Hyun Ahn, Belgin Dogan, Cassandra J. Barlogio, Christopher A. Broberg, Adrienne R. Franks, Emily Bulik-Sullivan, Ian M. Carroll, Kenneth W. Simpson, Anthony A. Fodor, Janelle C. Arthur. A consortia of clinical E. coli strains with distinct in vitro adherent/invasive properties establish their own co-colonization niche and shape the intestinal microbiota in inflammation-susceptible miceMicrobiome 2023; 11(1) doi: 10.1186/s40168-023-01710-y
101
Himani Pandey, Dheeraj Jain, Daryl W. T. Tang, Sunny H. Wong, Devi Lal. Gut microbiota in pathophysiology, diagnosis, and therapeutics of inflammatory bowel diseaseIntestinal Research 2024; 22(1): 15 doi: 10.5217/ir.2023.00080
102
M.J. Żórawski, D. Dudzik, D. Musiałowska. Genetic similarities of Escherichia coli isolated from hospitalized patientsProgress in Health Sciences 2017; 7(1): 0 doi: 10.5604/01.3001.0010.1874
103
Belgin Dogan, Jing Fu, Shiying Zhang, Ellen J. Scherl, Kenneth W. Simpson. Rifaximin decreases virulence of Crohn’s disease-associated Escherichia coli and epithelial inflammatory responsesThe Journal of Antibiotics 2018; 71(5): 485 doi: 10.1038/s41429-017-0022-y
104
D. J. Astley, N. Masters, A. Kuballa, M. Katouli. Commonality of adherent-invasive Escherichia coli isolated from patients with extraintestinal infections, healthy individuals and the environmentEuropean Journal of Clinical Microbiology & Infectious Diseases 2021; 40(1): 181 doi: 10.1007/s10096-020-04066-5
105
Youn Hee Cho, Michael J Renouf, Oluwafikemi Omotoso, Joseph B McPhee. Inflammatory bowel disease-associated adherent-invasive Escherichia coli have elevated host-defense peptide resistanceFEMS Microbiology Letters 2022; 369(1) doi: 10.1093/femsle/fnac098
106
Waleska Saitz, David Montero, Mirka Pardo, Daniela Araya, Marjorie De la Fuente, Marcela Hermoso, Mauricio Farfán, Daniel Ginard, Ramon Rosselló-Móra, Dave Rasko, Felipe Del Canto, Roberto Vidal. Characterization of Adherent-Invasive Escherichia coli (AIEC) Outer Membrane Proteins Provides Potential Molecular Markers to Screen Putative AIEC StrainsInternational Journal of Molecular Sciences 2022; 23(16): 9005 doi: 10.3390/ijms23169005
107
Ellen Cristina Souza de Oliveira, Ana Elisa Valencise Quaglio, Daniéla Oliveira Magro, Luiz Claudio Di Stasi, Ligia Yukie Sassaki. Intestinal Microbiota and miRNA in IBD: A Narrative Review about Discoveries and Perspectives for the FutureInternational Journal of Molecular Sciences 2023; 24(8): 7176 doi: 10.3390/ijms24087176
108
Allison Agus, Damien Richard, Tiphanie Faïs, Emilie Vazeille, Mélissa Chervy, Virginie Bonnin, Guillaume Dalmasso, Jérémy Denizot, Elisabeth Billard, Richard Bonnet, Anthony Buisson, Nicolas Barnich, Julien Delmas. Propionate catabolism by CD-associated adherent-invasive E. coli counteracts its anti-inflammatory effectGut Microbes 2021; 13(1) doi: 10.1080/19490976.2020.1839318
109
G. R. Bikbavova, M. A. Livzan. Modulation of instinal microbiom in the formation and progression of ulterative colitis.Annals of the Russian academy of medical sciences 2020; 75(6): 577 doi: 10.15690/vramn1238
110
Wenxiu Liu, Qian Wang, Yanrui Bai, Han Xiao, Zhunduo Li, Yan Wang, Qi Wang, Jing Yang, Hui Sun. Potential Application of Intestinal Organoids in Intestinal DiseasesStem Cell Reviews and Reports 2024; 20(1): 124 doi: 10.1007/s12015-023-10651-w
111
Jeannette S. Messer, Eugene B. Chang. Physiology of the Gastrointestinal Tract2018; : 795 doi: 10.1016/B978-0-12-809954-4.00036-0
112
Julien Delmas, Lucie Gibold, Tiphanie Faïs, Sylvine Batista, Martin Leremboure, Clara Sinel, Emilie Vazeille, Vincent Cattoir, Anthony Buisson, Nicolas Barnich, Guillaume Dalmasso, Richard Bonnet. Metabolic adaptation of adherent-invasive Escherichia coli to exposure to bile saltsScientific Reports 2019; 9(1) doi: 10.1038/s41598-019-38628-1
113
Gwladys Sevrin, Sébastien Massier, Benoit Chassaing, Allison Agus, Julien Delmas, Jérémy Denizot, Elisabeth Billard, Nicolas Barnich. Adaptation of adherent-invasive E. coli to gut environment: Impact on flagellum expression and bacterial colonization abilityGut Microbes 2020; 11(3): 364 doi: 10.1080/19490976.2017.1421886
114
L. Cochran, S. Hill, U. Lotti, K. Allenspach, D. Palma, M. Forman, A. T. Gary, B. Dogan, S. P. McDonough, K. W. Simpson. Clinical characteristics and long‐term outcome of E. coli‐associated granulomatous ileocolitis in dogs: five cases (2010‐2014)Journal of Small Animal Practice 2021; 62(7): 588 doi: 10.1111/jsap.13313
115
Vivien Deloule, Claire Boisset, Dalil Hannani, Antonia Suau, Audrey Le Gouellec, Jadwiga Chroboczek, Cyrille Botté, Yoshiki Yamaryo-Botté, Christine Chirat, Bertrand Toussaint. Prebiotic role of softwood hemicellulose in healthy mice modelJournal of Functional Foods 2020; 64: 103688 doi: 10.1016/j.jff.2019.103688
116
Andrew Leber, Raquel Hontecillas, Nuria Tubau-Juni, Victoria Zoccoli-Rodriguez, Vida Abedi, Josep Bassaganya-Riera. NLRX1 Modulates Immunometabolic Mechanisms Controlling the Host–Gut Microbiota Interactions during Inflammatory Bowel DiseaseFrontiers in Immunology 2018; 9 doi: 10.3389/fimmu.2018.00363
117
Anmol Gulati, Xin Guo. 2022 Medicinal Chemistry ReviewsMedicinal Chemistry Reviews 2022; 57: 389 doi: 10.1021/mc-2022-vol57.ch16
118
Manuela Costanzo, Vincenzo Cesi, Enrica Prete, Anna Negroni, Francesca Palone, Salvatore Cucchiara, Salvatore Oliva, Beatrice Leter, Laura Stronati. Krill oil reduces intestinal inflammation by improving epithelial integrity and impairing adherent-invasive Escherichia coli pathogenicityDigestive and Liver Disease 2016; 48(1): 34 doi: 10.1016/j.dld.2015.09.012
119
Ava Hosseini, Gillian M. Barlow, Gabriela Leite, Mohamad Rashid, Gonzalo Parodi, Jiajing Wang, Walter Morales, Stacy Weitsman, Ali Rezaie, Mark Pimentel, Ruchi Mathur. Consuming artificial sweeteners may alter the structure and function of duodenal microbial communitiesiScience 2023; 26(12): 108530 doi: 10.1016/j.isci.2023.108530
120
Rodrick J. Chiodini, Scot E. Dowd, Susan Galandiuk, Brian Davis, Angela Glassing. The predominant site of bacterial translocation across the intestinal mucosal barrier occurs at the advancing disease margin in Crohn's disease Microbiology 2016; 162(9): 1608 doi: 10.1099/mic.0.000336
121
Bahareh Nadalian, Banafsheh Nadalian, Mohammad Reza Zali, Abbas Yadegar. Outer Membrane Vesicles Derived from Adherent-Invasive Escherichia coli Induce Inflammatory Response and Alter the Gene Expression of Junction-Associated Proteins in Human Intestinal Epithelial CellsCanadian Journal of Infectious Diseases and Medical Microbiology 2024; 2024: 1 doi: 10.1155/2024/2701675
122
Jim Manos. The human microbiome in disease and pathologyAPMIS 2022; 130(12): 690 doi: 10.1111/apm.13225
123
Giacomo Caio, Lisa Lungaro, Nicola Segata, Matteo Guarino, Giorgio Zoli, Umberto Volta, Roberto De Giorgio. Effect of Gluten-Free Diet on Gut Microbiota Composition in Patients with Celiac Disease and Non-Celiac Gluten/Wheat SensitivityNutrients 2020; 12(6): 1832 doi: 10.3390/nu12061832
124
Eric Banan-Mwine Daliri, Fred Kwame Ofosu, Ramachandran Chelliah, Byong Hoon Lee, Deog-Hwan Oh. Health Impact and Therapeutic Manipulation of the Gut MicrobiomeHigh-Throughput 2020; 9(3): 17 doi: 10.3390/ht9030017
125
Yuxiao Chang, Xiang Li, Lei Ding, Chao Yang, Zhiyuan Pan, Ni Han, Yujun Cui, Fachao Zhi, Ruifu Yang, Hong Gao, Yujing Bi. Genetic and Functional Differences of Escherichia coli Strains from Colorectal Cancer Mucosal TissuesEngineering 2022; 16: 210 doi: 10.1016/j.eng.2021.03.028
126
Rafaella F. A. Costa, Maria L. A. Ferrari, Marie-Agnès Bringer, Arlette Darfeuille-Michaud, Flaviano S. Martins, Nicolas Barnich. Characterization of mucosa-associated Escherichia coli strains isolated from Crohn’s disease patients in BrazilBMC Microbiology 2020; 20(1) doi: 10.1186/s12866-020-01856-x
127
Khalid A. Abdelhalim, Ataç Uzel, Nalan Gülşen Ünal. Virulence determinants and genetic diversity of adherent-invasive Escherichia coli (AIEC) strains isolated from patients with Crohn's diseaseMicrobial Pathogenesis 2020; 145: 104233 doi: 10.1016/j.micpath.2020.104233
128
Yan-Ni Liang, Jin-Gao Yu, Dong-Bo Zhang, Zhen Zhang, Lang-Lang Ren, Lu-Han Li, Zheng Wang, Zhi-Shu Tang. Indigo Naturalis Ameliorates Dextran Sulfate Sodium-Induced Colitis in Mice by Modulating the Intestinal Microbiota CommunityMolecules 2019; 24(22): 4086 doi: 10.3390/molecules24224086
129
Ali Shawki, Rocio Ramirez, Marianne R. Spalinger, Paul M. Ruegger, Anica Sayoc-Becerra, Alina N. Santos, Pritha Chatterjee, Vinicius Canale, Jonathan D. Mitchell, John C. Macbeth, Casey M. Gries, Michel L. Tremblay, Ansel Hsiao, James Borneman, Declan F. McCole. The autoimmune susceptibility gene, PTPN2, restricts expansion of a novel mouse adherent-invasive E. coliGut Microbes 2020; 11(6): 1547 doi: 10.1080/19490976.2020.1775538
130
Donal Sheehan, Carthage Moran, Fergus Shanahan. The microbiota in inflammatory bowel diseaseJournal of Gastroenterology 2015; 50(5): 495 doi: 10.1007/s00535-015-1064-1
131
Aida Heidari, Mohammad Hassan Emami, Fatemeh Maghool, Samane Mohammadzadeh, Parisa Kadkhodaei Elyaderani, Tahereh Safari, Alireza Fahim, Razie Kamali Dolatabadi. Molecular epidemiology, antibiotic resistance profile and frequency of integron 1 and 2 in adherent-invasive Escherichia coli isolates of colorectal cancer patientsFrontiers in Microbiology 2024; 15 doi: 10.3389/fmicb.2024.1366719
132
Giovanna Alexandre Fabiano, Leila Marie Shinn, Adriane Elisabete Costa Antunes. Relationship between Oat Consumption, Gut Microbiota Modulation, and Short-Chain Fatty Acid Synthesis: An Integrative ReviewNutrients 2023; 15(16): 3534 doi: 10.3390/nu15163534
133
Qiao Liu, Bohyun Lee, Lei Xie. Small molecule modulation of microbiota: a systems pharmacology perspectiveBMC Bioinformatics 2022; 23(S3) doi: 10.1186/s12859-022-04941-2
134
Geeta Kulkarni, Bo Shen. Atlas of Endoscopy Imaging in Inflammatory Bowel Disease2020; : 353 doi: 10.1016/B978-0-12-814811-2.00023-2
135
Lacey R. Lopez, Ju-Hyun Ahn, Tomaz Alves, Janelle C. Arthur. Microenvironmental Factors that Shape Bacterial Metabolites in Inflammatory Bowel DiseaseFrontiers in Cellular and Infection Microbiology 2022; 12 doi: 10.3389/fcimb.2022.934619
136
Terence Van Raay, Emma Allen-Vercoe, Robert Allen Britton, Patrice D. Cani. Microbial Interactions and Interventions in Colorectal CancerMicrobiology Spectrum 2017; 5(3) doi: 10.1128/microbiolspec.BAD-0004-2016
137
Aida Mayorgas, Isabella Dotti, Azucena Salas. Microbial Metabolites, Postbiotics, and Intestinal Epithelial FunctionMolecular Nutrition & Food Research 2021; 65(5) doi: 10.1002/mnfr.202000188
138
Abdul Arif Khan, Zakir Khan, Abdul Malik, Mohd Abul Kalam, Phillip Cash, Mohd. Tashfeen Ashraf, Aws Alshamsan. Colorectal cancer-inflammatory bowel disease nexus and felony of Escherichia coliLife Sciences 2017; 180: 60 doi: 10.1016/j.lfs.2017.05.016
139
Urszula Krupa-Kozak, Natalia Drabińska. Comprehensive Gut Microbiota2022; : 243 doi: 10.1016/B978-0-12-819265-8.00036-X
140
Holger Schäffler, Daniel P. R. Herlemann, Christian Alberts, Annika Kaschitzki, Peggy Bodammer, Karen Bannert, Thomas Köller, Philipp Warnke, Bernd Kreikemeyer, Georg Lamprecht. Mucosa‐attached bacterial community in Crohn's disease coheres with the clinical disease activity indexEnvironmental Microbiology Reports 2016; 8(5): 614 doi: 10.1111/1758-2229.12411
141
Michał Turniak, Beata Sobieszczańska. Diffusely Adhering Escherichia Coli Postępy Mikrobiologii - Advancements of Microbiology 2019; 58(2): 143 doi: 10.21307/PM-2019.58.2.143
142
Meryl Perlman, Stefania Senger, Smriti Verma, James Carey, Christina S. Faherty. A foundational approach to culture and analyze malnourished organoidsGut Microbes 2023; 15(2) doi: 10.1080/19490976.2023.2248713
143
Anthony Buisson, Marie-Agnès Bringer, Nicolas Barnich, Emilie Vazeille. Macrophages Versus Escherichia coliInflammatory Bowel Diseases 2016; 22(12): 2943 doi: 10.1097/MIB.0000000000000946
144
Humaira Rashid, Towfida J. Siddiqua, Biplob Hossain, Abdullah Siddique, Mamun Kabir, Zannatun Noor, Masud Alam, Mamun Ahmed, Rashidul Haque. MicroRNA Expression and Intestinal Permeability in Children Living in a Slum Area of BangladeshFrontiers in Molecular Biosciences 2021; 8 doi: 10.3389/fmolb.2021.765301
145
Ke Li, Lina Xu, Mengyue Tian, Ming Yang, Li Jia, Dongmin Zou, Ruonan Liu, Jinliang Du, Yuzhong Ma. The pathogenic potential and genetic attributes of Escherichia coli in milk from dairy cows with subclinical mastitisJournal of Environmental Science and Health, Part B 2022; 57(11): 876 doi: 10.1080/03601234.2022.2129239
146
Roberta Maria Nicolosi, Graziana Bonincontro, Elena Imperia, Camilla Badiali, Daniela De Vita, Fabio Sciubba, Laura Dugo, Michele Pier Luca Guarino, Annamaria Altomare, Giovanna Simonetti, Gabriella Pasqua. Protective Effect of Procyanidin-Rich Grape Seed Extract against Gram-Negative Virulence FactorsAntibiotics 2023; 12(11): 1615 doi: 10.3390/antibiotics12111615
147
Oumaïra Rahmouni, Cécile Vignal, Marie Titécat, Benoît Foligné, Benjamin Pariente, Laurent Dubuquoy, Pierre Desreumaux, Christel Neut. High carriage of adherent invasive E. coli in wildlife and healthy individualsGut Pathogens 2018; 10(1) doi: 10.1186/s13099-018-0248-7
148
F. J. Ryan, A. M. Ahern, R. S. Fitzgerald, E. J. Laserna-Mendieta, E. M. Power, A. G. Clooney, K. W. O’Donoghue, P. J. McMurdie, S. Iwai, A. Crits-Christoph, D. Sheehan, C. Moran, B. Flemer, A. L. Zomer, A. Fanning, J. O’Callaghan, J. Walton, A. Temko, W. Stack, L. Jackson, S. A. Joyce, S. Melgar, T. Z. DeSantis, J. T. Bell, F. Shanahan, M. J. Claesson. Colonic microbiota is associated with inflammation and host epigenomic alterations in inflammatory bowel diseaseNature Communications 2020; 11(1) doi: 10.1038/s41467-020-15342-5
149
Banafsheh Nadalian, Bahareh Nadalian, Hamidreza Houri, Shabnam Shahrokh, Mohammad Abdehagh, Abbas Yadegar, Gholamhossein Ebrahimipour. Phylogrouping and characterization of Escherichia coli isolated from colonic biopsies and fecal samples of patients with flare of inflammatory bowel disease in IranFrontiers in Medicine 2022; 9 doi: 10.3389/fmed.2022.985300
150
Ramón Gómez-Moreno, Rachell Martínez-Ramírez, Abiel Roche-Lima, Kelvin Carrasquillo-Carrión, Josué Pérez-Santiago, Abel Baerga-Ortiz. Hotspots of Sequence Variability in Gut Microbial Genes Encoding Pro-Inflammatory Factors Revealed by OligotypingFrontiers in Genetics 2019; 10 doi: 10.3389/fgene.2019.00631
151
Na Han, Xianhui Peng, Tingting Zhang, Yujun Qiang, Xiuwen Li, Wen Zhang, Laurie E. Comstock. Rapid turnover and short-term blooms of Escherichia coli in the human gut Journal of Bacteriology 2024; 206(1) doi: 10.1128/jb.00239-23