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©The Author(s) 2025.
World J Gastroenterol. Dec 14, 2025; 31(46): 114415
Published online Dec 14, 2025. doi: 10.3748/wjg.v31.i46.114415
Published online Dec 14, 2025. doi: 10.3748/wjg.v31.i46.114415
Table 1 Differentiation of human pluripotent stem cells into hepatic parenchymal and non-parenchymal cells
| Liver lineages | Stem cell types | Culture medium | Supplements | Days of induction | Biomarkers | Ref. |
| Hepatocyte-like cells | hiPSCs | RPMI/B27, KO-DMEM with KSR, IMDM | Activin A, Wnt3a, HGF, OSM, Dex, ITS premix | 12 days | AFP, albumin, CK18, HNF4, CYP3A4, CYP7A1 | Chen et al[76] |
| Hepatocyte-like cells | hiPSCs | Hepatocyte culture medium, IMDM, N2/B27 | Acitivin A, FGF4, BMP2, HGF, KGF, OSM, Dex | 21 days | AFP, albumin, CK8, CK18, CK19, PEPCK, HNF4α, HNF6, CEBPα, GATA4, HEX | Song et al[75] |
| Hepatocyte cells | GATA6- hiPSCs | StemFit04, IMDM/Ham’s F-12K, N2/B27 | L-ascorbic acid, Dex, 2-phosphate, basic fibroblast growth factor, 1-thioglycerol, HGF, nicotinamide, OSM | 18 days | Albumin, AAT, AFP, HNF4A, CYP3A4, CYP3A5 | Luo et al[126] |
| Hepatic cells | hESCs | DMEM/F12, KSR, 1640 medium | Activin A, aFGF, basic fibroblast growth factor, FGF4, HGF, BMP2, BMP4, Noggin, OSM, Dex, Su5402 | 18 days | PEPCK, CYP7A1, CYP3A4, CYP2B6 | Cai et al[74] |
| Hepatocytes | hPSCs | DEI medium A/B, CDM3 medium, CDM5 medium | A8301, FGF2, Acitivin A, BMP4, ATRA, AAP, TTNPB, OSM, insulin, forskolin, SB505124, 8-bromo-cAMP, DAPT, CHIR99021, AA2P, RO4929097, Dex | 18 days | Fumarylacetoacetate hydrolase, albumin, HGD | Ang et al[71] |
| Hepatic stellate cells | hiPSCs | Liver differentiation medium | BMP4, FGF1, FGF3, retinol, palmitic acid | 12 days | PDGFRβ, PCHD7, COL1α1 | Vallverdú et al[2] |
| Hepatic stellate cells | hPSCs | DMEM low glucose | BMP4, FGF1, FGF3, retinol, palmitic acid, ITS, Dex | 12 days | DES, P75NTR, ALCAM, ACTA2, COL1α1, LRAT, RELN, PCDH7, PDGFRβ | Coll et al[91] |
| Hepatic stellate cells | hESCs | DMEM/F-12, B27, FBS | Activin A, CHIR99021, BMP4, FGF1, FGF3, Y-27632, palmitic acid, retinol | 12 days | PDGFRβ, NCAM1, ALCAM, LRAT, ACTA2, vimentin | Wilhelmsen et al[92] |
| LSECs | hPSCs | EBM-2 medium, IMDM | BMP4, basic fibroblast growth factor, VEGF-A, CHIR99021, cAMP, GSI, SB431542, ITS-X, ascorbic acid, transferrin | 22 days | CD34, PECAM1, VWF, LYVE1, CD14, FCGR2B, CD36, CD54, STAB1, FVIII, STAB2, CLEC1B | Gage et al[97] |
| LSECs | hPSCs | IMDM, DMEM-F12, StemPro34, FCS | BMP4, Activin A, ascorbic acid, basic fibroblast growth factor, L-685-458, ITS-X, VEGF-A, CHIR99021, transferrin | 21 days | FCGR2B, LYVE1, STAB2, F8, CD14, MRC1, CD36, RAMP3, CD32B, FVIII | Gage et al[96] |
| LSECs | Mouse ESCs | IMEM, EGM2-MV, FBS | Adrenomedullin, SB431542, β-ME, VEGF-A, ITS | 20 days | F8, Fcgr2b, Mrc1 | Arai et al[100] |
| Cholangiocytes | hPSCs | RPMI 1640 medium, low glucose DMEM, B27, DMEM/F12, a-MEM | MTG, Acitivin A, CHIR99021, ascorbic acid, basic fibroblast growth factor, BMP4, HGF, EGF, OSM, Dex, RA, Noggin, Y-27632, forskolin | 49 days | Albumin, AFP, CFTR, TRPV4, PKD1, PKD2 | Ogawa et al[101] |
| Cholangiocytes | hiPSCs | RPMI, B27, William’s E medium | Acitivin A, FGF2, FGF10, BMP4, Ly294002, SB431542, RA, EGF | 26 days | SSTR2, ALP, KRT7, SOX9 | Sampaziotis et al[102] |
| Kupffer cells | hiPSCs | X-VIVO 15 media, PHCM, advanced DMEM | M-CSF, IL-3, streptomycin | 4-5 weeks | CD163, CD200R, CD86, IL-6, CSF1, HLA-DRB1, IL-1β | Tasnim et al[106] |
| Kupffer cells | hESCs; cord blood | DMEM/F12, KSR, IMDM, RPMI 1640 | BMP4, basic fibroblast growth factor, Activin A, IL-3, IL-7, M-CSF, TPO, SCF | 9-17 days (cord blood); > 90 days (hESCs) | MARCO, CD5 L, TIMD4, VCAM1, CPVL, VSIG4, FOLR2, CD163 | Kent et al[99] |
Table 2 Liver organoids generated from human pluripotent stem cells
| Organoid types | Stem cells | Biomarkers | Characteristics | Ref. |
| Vascularized mLOs | hPSCs | HNF1B, HNF4A, albumin, CEBPA, CYP | The mLOs was superior to 2D Hep for HPC maturation; mLOs comprise hepatic- and non-parenchymal cells; mLOs with enhanced structural complexity and functionality | Chi et al[112] |
| Liver organoids | hPSCs | AFP, albumin, HNF4α, A1AT, KRT19, KRT7, albumin | The hPSC-LOs with various liver cell types highly simulated DENV infection and screened for antivirals | Li et al[69] |
| Liver organoids | hiPSCs | Albumin, HNF4α, KRT7, KRT19, CK7 | The in situ formation of hiPSC-LOs were achieved in microporous array chips; the hiPSC-LOs were competent for evaluating the efficacy of semaglutide for NAFLD | You et al[221] |
| Liver bud organoids (hLBOs) | hPSCs | STAB2, LYVE1, CD32, CD36, FCGR2B | The vascularized hLBOs contain hepatic and endothelial subpopulations that show key organ-specific functional features, and can restore coagulation factor deficiencies | Saiki et al[98] |
| Liver bud organoids (hLBOs) | hiPSCs | Albumin, CK18, HNF4α, AFP | The hiPSC-derived hLBOs were competent for whole body in vivo cell tracking and the resultant cell therapy development | Ashmore-Harris et al[119] |
| Liver bud organoids (hLBOs) | hPSCs | TBX3, ADRA1B, HNF4α, WT1, ADRA1B, LHX2, CD144, CD31 | The strategy fulfilled the mass production and batch validation of self-organizing hLBOs with in vitro functions and in vivo therapeutic potential from hPSCs | Takebe et al[118] |
| Hepatocyte organoids | hiPSCs | Albumin, ASGR1, ASGR2, A1AT, AFP, SERPINA1 | HiPSCs were transduced with adeno-associated virus vectors and the hepatocyte organoids enhanced the translation of gene therapies | Berreur et al[125] |
| Hepatostellate organoids | hiPSCs | Albumin, TTR, TDO2, COL1A1, TIMP1, KRT17, TACSTD2 | The hepatostellate organoids were derived from hiPSCs with dyskerin 1 mutation, and would benefit the studies upon telomere dysfunction–induced liver disease | Choi et al[128] |
Table 3 Clinical trials of liver organoids for liver diseases
| NCT No. | Study title | Study status | Condition | Enrollment | Study type | Location |
| NCT06929845 | “Organoid Models of Hepatocellular Carcinoma” | Recruiting | HCC | 150 | Interventional | Italy |
| NCT02436564 | “In Vitro Models of Liver and Pancreatic Cancer” | Unknown | Cholangiocarcinoma | 75 | Observational | United Kingdom |
| NCT05913141 | “PDO/PDO-TIL/PDOTS for Drug Screen” | Recruiting | HCC | 30 | Observational | China |
| NCT06077591 | “Prospective Clinical Validation of Next Generation Sequencing and Patient-Derived Tumor Organoids (PDO) Guided Therapy in Patients with Advanced/ Inoperable Solid Tumors” | Recruiting | HCC | 40 | Interventional | China |
| NCT06355700 | “Hepatocellular Carcinoma Liver Organoids” | Recruiting | HCC | 10 | Interventional | Italy |
| NCT06699524 | “Construction of a Recurrence Risk Prediction Model for Liver Resection Based on Drug Sensitivity of Patient-derived Hepatocellular Carcinoma Organoid” | Active not recruiting | HCC | 122 | Observational | China |
| NCT06856252 | “Human Liver Organoids as a Model to Study the Development of NASH” | Recruiting | NASH | 60 | Interventional | Italy |
| NCT06787625 | “Development of Organoids From Primary Colorectal Tumors and Synchronous Liver Metastases” | Recruiting | Colorectal cancer | 10 | Observational | Italy |
| NCT05932836 | “An Organoid-on-chips Technique Based on Biopsy Samples and Its Efficacy in Predicting the Response to HAI in HCC” | Active not recruiting | HCC | 165 | Observational | China |
Table 4 Clinical trials of stem cell-based observational and interventional studies for liver diseases
| NCT No. | Study title | Cell types | Study status | Condition | Phase | Enrollment | Study type | Location |
| NCT00953693 | “Patient Specific Induced Pluripotency Stem Cells (PSiPS)” | hiPSCs | Completed | Liver insufficiency | N/A | 15 | Observational | Iran |
| NCT01591200 | “Dose Finding Study to Assess Safety and Efficacy of Stem Cells in Liver Cirrhosis” | MSCs | Completed | Alcoholic liver cirrhosis | Phase 2 | 40 | Interventional | India |
| NCT01429038 | “MSCs After Renal or Liver Transplantation” | MSCs | Completed | Liver failure | Phase 1/2 | 40 | Interventional | Belgium |
| NCT00655707 | “A Phase I/II Safety and Tolerability Dose Escalation Study of Autologous Stem Cells to Patients With Liver Insufficiency” | Adult stem cells | Completed | Liver insufficiency | Phase 1/2 | 5 | Interventional | United Kingdom |
| NCT02089919 | “Cancer Stem Cells Vaccine Therapy in Treating Hepatocellular Cancer Patients” | Cancer stem cells | Completed | HCC | Phase 1/2 | 40 | Interventional | China |
| NCT00147043 | “Adult Stem Cell Therapy in Liver Insufficiency” | Adult stem cells | Completed | Liver cirrhosis | N/A | 5 | Interventional | United Kingdom |
| NCT04243681 | “Combination of Autologous MSC and HSC Infusion in Patients With Decompensated Cirrhosis” | MSCs + hematopoetic stem cells | Completed | Decompensated liver cirrhosis | Phase 4 | 5 | Interventional | India |
| NCT01333228 | “Evaluate Safety and Efficacy of Autologous Bone Marrow-derived Endothelial Progenitor Cells in Advanced Liver Cirrhosis” | BM-EPCs | Completed | Liver cirrhosis | Phase 1/2 | 14 | Interventional | Spain |
| NCT05331872 | “Umbilical Cord-derived MSC Infusion in the Management of Adult Liver Cirrhosis” | UC-MSCs | Completed | Liver cirrhosis | Phase 1 | 20 | Interventional | Vietnam |
| NCT00420134 | “Improvement of Liver Function in Liver Cirrhosis Patients After Autologous MSC Injection: A Phase I-II Clinical Trial” | Autologous MSCs | Completed | Liver cirrhosis | Phase 1/2 | 30 | Interventional | Iran |
| NCT01454336 | “Transplantation of Autologous MSC in Decompensated Cirrhotic Patients With Pioglitazone” | Autologous MSCs | Completed | Decompensated liver cirrhosis | Phase 1 | 3 | Interventional | Iran |
| NCT02557724 | “Mobilization of MSCs During Liver Transplantation” | MSCs | Completed | Liver failure, HCC | N/A | 35 | Observational | United States |
| NCT01875081 | “REVIVE (Randomized Exploratory Clinical Trial to Evaluate the Safety and Effectiveness of Stem Cell Product in Alcoholic Liver Cirrhosis Patient)” | Stem cells | Completed | Alcoholic liver cirrhosis | Phase 2 | 72 | Interventional | South Korea |
| NCT01013194 | “Human Fetal Liver Cell Transplantation in Chronic Liver Failure” | Fetal liver cells | Completed | Liver cirrhosis | Phase 1/2 | 25 | Interventional | Italy |
| NCT02297867 | “Clinical Trial Study About Human Adipose-Derived Stem Cells in the Liver Cirrhosis” | ASCs | Completed | Liver cirrhosis | Phase 1 | 6 | Interventional | China |
| NCT01378182 | “Efficacy of In vitro Expanded Bone Marrow Derived Allogeneic MSC Transplantation Via Portal Vein or Hepatic Artery or Peripheral Vein in Patients With Wilson Cirrhosis” | BM-MSCs | Completed | Wilson’s disease | NA | 10 | Interventional | Turkey |
| NCT01120925 | “Autologous Bone Marrow Derived Stem Cells in Decompensated Cirrhotic Patients” | BM-MSCs | Completed | Decompensated liver cirrhosis | Phase 1/2 | 30 | Interventional | Iran |
| NCT01220492 | “Umbilical Cord MSCs for Patients With Liver Cirrhosis” | UC-MSCs | Completed | Liver cirrhosis | Phase 1/2 | 266 | Interventional | China |
| NCT01342250 | “Human Umbilical Cord MSCs Transplantation for Patients With Decompensated Liver Cirrhosis” | UC-MSCs | Completed | Liver cirrhosis | Phase 1/2 | 20 | Interventional | China |
| NCT03468699 | “Autologous Bone Marrow Mononuclear Stem Cell for Children Suffering From Liver Cirrhosis Due to Biliary Atresia” | BM-MSCs | Completed | Liver fibrosis (biliary atresia) | Phase 2 | 17 | Interventional | Vietnam |
| NCT04522869 | “Umbilical Cord Derived MSC (UC -MSC) Transplantation for Children Suffering From Biliary Atresia” | UC-MSCs | Completed | Primary biliary cirrhosis | Phase 1/2 | 20 | Interventional | Vietnam |
| NCT01625351 | “A Study of CD45RA+ Depleted Haploidentical Stem Cell Transplantation in Children With Relapsed or Refractory Solid Tumors and Lymphomas” | Hematopoetic stem cells | Completed | Hepatic tumor | Phase 1 | 23 | Interventional | United States |
| NCT00003966 | “Defibrotide in Treating Patients With Liver Damage Following Peripheral Stem Cell Transplantation” | Peripheral stem cells | Completed | Veno-occlusive disease | Phase 2 | 151 | Interventional | United States |
| NCT03132337 | “Sinusoidal Obstruction Syndrome for Stem Cell Transplant Patients Biomarker Study” | Stem cells | Completed | Sinusoidal obstruction syndrome | N/A | 80 | Observational | United States |
| NCT03963921 | “Safety and Tolerability of HepaStem in Patients With Cirrhotic and Pre-cirrhotic NASH Patients” | HepaStem | Completed | NASH | Phase 1/2 | 23 | Interventional | Belgium, Spain |
| NCT00956891 | “Therapeutic Effects of Liver Failure Patients Caused by Chronic Hepatitis B After Autologous MSCs Transplantation” | Autologous MSCs | Completed | Liver failure | N/A | 158 | Observational | China |
| NCT02727673 | “Relationship Between Circulating Tumor Stem Cells and the Clinical Pathology” | Tumor stem cells | Completed | HCC | N/A | 1000 | Observational | China |
| NCT00358501 | “Defibrotide for the Treatment of Severe Hepatic Veno-Occlusive Disease in Hematopoetic Stem Cell Transplant Patients” | Hematopoetic stem cells | Completed | Severe hepatic veno-occlusive disease | Phase 3 | 134 | Interventional | United States, Canada |
| NCT00007813 | “Peripheral Stem Cell Transplantation Plus Chemotherapy in Treating Patients With Malignant Solid Tumors” | Peripheral stem cells | Completed | Liver cancer | Phase 1 | 21 | Interventional | United States |
| NCT04423237 | “Risk Factors and Measures to Prevent Liver and Pancreas Complications in Pediatric Patients After HSCT” | Hematopoetic stem cells | Completed | Liver complication | N/A | 39 | Observational | Italy |
| NCT03511794 | “Effectiveness of the Hepatitis B Vaccine Post-Hematopoietic Stem Cell Transplant” | Hematopoetic stem cells | Completed | Hepatitis B | N/A | 52 | Observational | United States |
| NCT01481649 | “Risk of Hepatitis B Reactivation After Bone Marrow Transplantation With Prior Hepatitis B Virus (HBV) Exposure” | Stem cells | Completed | Exposure to hepatitis B virus | N/A | 69 | Observational | China |
| NCT00002515 | “Combination Chemotherapy Followed by Bone Marrow Transplantation in Treating Patients With Rare Cancer” | Stem cells | Completed | HCC | Phase 2 | N/A | Interventional | United States |
| NCT06892236 | “Preparation of IPSC for Cell Gene Editing for the Treatment of AATD” | hiPSCs | Recruiting | Alpha1-antitrypsin deficiency | NA | 3 | Interventional | Italy |
| NCT06242405 | “Effect of Different Frequencies of Umbilical Cord-MSCs Through Peripheral Vein in Patients with ESLD” | UC-MSCs | Recruiting | End-stage liver disease | NA | 92 | Interventional | China |
| NCT06564740 | “Stem Cell Applications in Biliary Atresia Patients” | Stem cells | Recruiting | Liver fibrosis (biliary atresia) | NA | 64 | Interventional | Turkey |
| NCT06740149 | “Efficacy and Safety of BMSCs (CG-BM1) for ACLF Patients” | BM-MSCs | Recruiting | ACLF | Phase 1/2 | 90 | Interventional | China |
| NCT06904755 | “Safety and Effectiveness of MSCs in Blood Purification for the Treatment of Liver Failure” | MSCs | Recruiting | Liver failure | Phase 1 | 10 | Interventional | China |
| NCT05106972 | “Umbilical Cord MSC Transplantation for Decompensated Hepatitis B Cirrhosis” | UC-MSCs | Recruiting | Liver cirrhosis | NA | 30 | Interventional | China |
| NCT05985863 | “Human Umbilical Cord MSC Transplantation for The Treatment of Acute-on-Chronic Liver Failure” | UC-MSCs | Recruiting | ACLF | Phase 1/2 | 150 | Interventional | China |
| NCT04689152 | “Clinical Trial to Evaluate the Efficacy and Safety of Cellgram-LC Administration in Patients With Alcoholic Cirrhosis” | Cellgram-LC | Recruiting | Alcoholic cirrhosis | Phase 3 | 200 | Interventional | South Korea |
| NCT03826433 | “hUC-MSCs (19#iSCLife®-LC) in the Treatment of Decompensated Hepatitis b Cirrhosis hepatitis b Cirrhosis” | UC-MSCs | Recruiting | Hepatitis B | Phase 1 | 20 | Interventional | China |
| NCT00382278 | “Safety Study of Autologous Stem Cell in Liver Cirrhosis” | Autologous stem cells | Terminated | Liver cirrhosis | Phase 1/2 | 15 | Interventional | Brazil |
| NCT03860155 | “Allogeneic ABCB5-positive Stem Cells for Treatment of Acute-on-Chronic Liver Failure” | Allogeneic stem cells | Terminated | ACLF | Phase 1/2 | 5 | Interventional | Germany |
| NCT00923052 | “The Natural History of Solid Organ Cancer Stem Cells (SOCSC)” | Cancer stem cells | Terminated | Hepatic cancer | N/A | 190 | Observational | United States |
- Citation: Wang YX, Ren YN, Zhang SS, Sun S, Xu MY, Wei T, Zhang LS. Application of stem cells in the precise diagnosis and treatment of liver diseases. World J Gastroenterol 2025; 31(46): 114415
- URL: https://www.wjgnet.com/1007-9327/full/v31/i46/114415.htm
- DOI: https://dx.doi.org/10.3748/wjg.v31.i46.114415
