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Copyright ©The Author(s) 2025.
World J Gastroenterol. Dec 14, 2025; 31(46): 114415
Published online Dec 14, 2025. doi: 10.3748/wjg.v31.i46.114415
Table 1 Differentiation of human pluripotent stem cells into hepatic parenchymal and non-parenchymal cells
Liver lineages
Stem cell types
Culture medium
Supplements
Days of induction
Biomarkers
Ref.
Hepatocyte-like cellshiPSCsRPMI/B27, KO-DMEM with KSR, IMDMActivin A, Wnt3a, HGF, OSM, Dex, ITS premix12 daysAFP, albumin, CK18, HNF4, CYP3A4, CYP7A1Chen et al[76]
Hepatocyte-like cellshiPSCsHepatocyte culture medium, IMDM, N2/B27Acitivin A, FGF4, BMP2, HGF, KGF, OSM, Dex21 daysAFP, albumin, CK8, CK18, CK19, PEPCK, HNF4α, HNF6, CEBPα, GATA4, HEXSong et al[75]
Hepatocyte cellsGATA6- hiPSCsStemFit04, IMDM/Ham’s F-12K, N2/B27L-ascorbic acid, Dex, 2-phosphate, basic fibroblast growth factor, 1-thioglycerol, HGF, nicotinamide, OSM18 daysAlbumin, AAT, AFP, HNF4A, CYP3A4, CYP3A5Luo et al[126]
Hepatic cellshESCsDMEM/F12, KSR, 1640 mediumActivin A, aFGF, basic fibroblast growth factor, FGF4, HGF, BMP2, BMP4, Noggin, OSM, Dex, Su540218 daysPEPCK, CYP7A1, CYP3A4, CYP2B6Cai et al[74]
HepatocyteshPSCsDEI medium A/B, CDM3 medium, CDM5 mediumA8301, FGF2, Acitivin A, BMP4, ATRA, AAP, TTNPB, OSM, insulin, forskolin, SB505124, 8-bromo-cAMP, DAPT, CHIR99021, AA2P, RO4929097, Dex18 daysFumarylacetoacetate hydrolase, albumin, HGDAng et al[71]
Hepatic stellate cellshiPSCsLiver differentiation mediumBMP4, FGF1, FGF3, retinol, palmitic acid12 daysPDGFRβ, PCHD7, COL1α1Vallverdú et al[2]
Hepatic stellate cellshPSCsDMEM low glucoseBMP4, FGF1, FGF3, retinol, palmitic acid, ITS, Dex12 daysDES, P75NTR, ALCAM, ACTA2, COL1α1, LRAT, RELN, PCDH7, PDGFRβColl et al[91]
Hepatic stellate cellshESCsDMEM/F-12, B27, FBSActivin A, CHIR99021, BMP4, FGF1, FGF3, Y-27632, palmitic acid, retinol12 daysPDGFRβ, NCAM1, ALCAM, LRAT, ACTA2, vimentinWilhelmsen et al[92]
LSECshPSCsEBM-2 medium, IMDMBMP4, basic fibroblast growth factor, VEGF-A, CHIR99021, cAMP, GSI, SB431542, ITS-X, ascorbic acid, transferrin22 daysCD34, PECAM1, VWF, LYVE1, CD14, FCGR2B, CD36, CD54, STAB1, FVIII, STAB2, CLEC1BGage et al[97]
LSECshPSCsIMDM, DMEM-F12, StemPro34, FCSBMP4, Activin A, ascorbic acid, basic fibroblast growth factor, L-685-458, ITS-X, VEGF-A, CHIR99021, transferrin21 daysFCGR2B, LYVE1, STAB2, F8, CD14, MRC1, CD36, RAMP3, CD32B, FVIIIGage et al[96]
LSECsMouse ESCsIMEM, EGM2-MV, FBSAdrenomedullin, SB431542, β-ME, VEGF-A, ITS20 daysF8, Fcgr2b, Mrc1Arai et al[100]
CholangiocyteshPSCsRPMI 1640 medium, low glucose DMEM, B27, DMEM/F12, a-MEMMTG, Acitivin A, CHIR99021, ascorbic acid, basic fibroblast growth factor, BMP4, HGF, EGF, OSM, Dex, RA, Noggin, Y-27632, forskolin49 daysAlbumin, AFP, CFTR, TRPV4, PKD1, PKD2Ogawa et al[101]
CholangiocyteshiPSCsRPMI, B27, William’s E mediumAcitivin A, FGF2, FGF10, BMP4, Ly294002, SB431542, RA, EGF26 daysSSTR2, ALP, KRT7, SOX9Sampaziotis et al[102]
Kupffer cellshiPSCsX-VIVO 15 media, PHCM, advanced DMEMM-CSF, IL-3, streptomycin4-5 weeksCD163, CD200R, CD86, IL-6, CSF1, HLA-DRB1, IL-1βTasnim et al[106]
Kupffer cellshESCs; cord bloodDMEM/F12, KSR, IMDM, RPMI 1640BMP4, basic fibroblast growth factor, Activin A, IL-3, IL-7, M-CSF, TPO, SCF9-17 days (cord blood); > 90 days (hESCs)MARCO, CD5 L, TIMD4, VCAM1, CPVL, VSIG4, FOLR2, CD163Kent et al[99]
Table 2 Liver organoids generated from human pluripotent stem cells
Organoid types
Stem cells
Biomarkers
Characteristics
Ref.
Vascularized mLOshPSCsHNF1B, HNF4A, albumin, CEBPA, CYPThe mLOs was superior to 2D Hep for HPC maturation; mLOs comprise hepatic- and non-parenchymal cells; mLOs with enhanced structural complexity and functionalityChi et al[112]
Liver organoidshPSCsAFP, albumin, HNF4α, A1AT, KRT19, KRT7, albuminThe hPSC-LOs with various liver cell types highly simulated DENV infection and screened for antiviralsLi et al[69]
Liver organoidshiPSCsAlbumin, HNF4α, KRT7, KRT19, CK7The in situ formation of hiPSC-LOs were achieved in microporous array chips; the hiPSC-LOs were competent for evaluating the efficacy of semaglutide for NAFLDYou et al[221]
Liver bud organoids (hLBOs)hPSCsSTAB2, LYVE1, CD32, CD36, FCGR2BThe vascularized hLBOs contain hepatic and endothelial subpopulations that show key organ-specific functional features, and can restore coagulation factor deficienciesSaiki et al[98]
Liver bud organoids (hLBOs)hiPSCsAlbumin, CK18, HNF4α, AFPThe hiPSC-derived hLBOs were competent for whole body in vivo cell tracking and the resultant cell therapy developmentAshmore-Harris et al[119]
Liver bud organoids (hLBOs)hPSCsTBX3, ADRA1B, HNF4α, WT1, ADRA1B, LHX2, CD144, CD31The strategy fulfilled the mass production and batch validation of self-organizing hLBOs with in vitro functions and in vivo therapeutic potential from hPSCsTakebe et al[118]
Hepatocyte organoidshiPSCsAlbumin, ASGR1, ASGR2, A1AT, AFP, SERPINA1HiPSCs were transduced with adeno-associated virus vectors and the hepatocyte organoids enhanced the translation of gene therapiesBerreur et al[125]
Hepatostellate organoidshiPSCsAlbumin, TTR, TDO2, COL1A1, TIMP1, KRT17, TACSTD2The hepatostellate organoids were derived from hiPSCs with dyskerin 1 mutation, and would benefit the studies upon telomere dysfunction–induced liver diseaseChoi et al[128]
Table 3 Clinical trials of liver organoids for liver diseases
NCT No.
Study title
Study status
Condition
Enrollment
Study type
Location
NCT06929845“Organoid Models of Hepatocellular Carcinoma”RecruitingHCC150InterventionalItaly
NCT02436564“In Vitro Models of Liver and Pancreatic Cancer”UnknownCholangiocarcinoma75ObservationalUnited Kingdom
NCT05913141“PDO/PDO-TIL/PDOTS for Drug Screen”RecruitingHCC30ObservationalChina
NCT06077591“Prospective Clinical Validation of Next Generation Sequencing and Patient-Derived Tumor Organoids (PDO) Guided Therapy in Patients with Advanced/ Inoperable Solid Tumors”RecruitingHCC40InterventionalChina
NCT06355700“Hepatocellular Carcinoma Liver Organoids”RecruitingHCC10InterventionalItaly
NCT06699524“Construction of a Recurrence Risk Prediction Model for Liver Resection Based on Drug Sensitivity of Patient-derived Hepatocellular Carcinoma Organoid”Active not recruitingHCC122ObservationalChina
NCT06856252“Human Liver Organoids as a Model to Study the Development of NASH”RecruitingNASH60InterventionalItaly
NCT06787625“Development of Organoids From Primary Colorectal Tumors and Synchronous Liver Metastases”RecruitingColorectal cancer10ObservationalItaly
NCT05932836“An Organoid-on-chips Technique Based on Biopsy Samples and Its Efficacy in Predicting the Response to HAI in HCC”Active not recruitingHCC165ObservationalChina
Table 4 Clinical trials of stem cell-based observational and interventional studies for liver diseases
NCT No.
Study title
Cell types
Study status
Condition
Phase
Enrollment
Study type
Location
NCT00953693“Patient Specific Induced Pluripotency Stem Cells (PSiPS)”hiPSCsCompletedLiver insufficiencyN/A15ObservationalIran
NCT01591200“Dose Finding Study to Assess Safety and Efficacy of Stem Cells in Liver Cirrhosis”MSCsCompletedAlcoholic liver cirrhosisPhase 240InterventionalIndia
NCT01429038“MSCs After Renal or Liver Transplantation”MSCsCompletedLiver failurePhase 1/240InterventionalBelgium
NCT00655707“A Phase I/II Safety and Tolerability Dose Escalation Study of Autologous Stem Cells to Patients With Liver Insufficiency”Adult stem cellsCompletedLiver insufficiencyPhase 1/25InterventionalUnited Kingdom
NCT02089919“Cancer Stem Cells Vaccine Therapy in Treating Hepatocellular Cancer Patients”Cancer stem cellsCompletedHCCPhase 1/240InterventionalChina
NCT00147043“Adult Stem Cell Therapy in Liver Insufficiency”Adult stem cellsCompletedLiver cirrhosisN/A5InterventionalUnited Kingdom
NCT04243681“Combination of Autologous MSC and HSC Infusion in Patients With Decompensated Cirrhosis”MSCs + hematopoetic stem cellsCompletedDecompensated liver cirrhosisPhase 45InterventionalIndia
NCT01333228“Evaluate Safety and Efficacy of Autologous Bone Marrow-derived Endothelial Progenitor Cells in Advanced Liver Cirrhosis”BM-EPCsCompletedLiver cirrhosisPhase 1/214InterventionalSpain
NCT05331872“Umbilical Cord-derived MSC Infusion in the Management of Adult Liver Cirrhosis”UC-MSCsCompletedLiver cirrhosisPhase 120InterventionalVietnam
NCT00420134“Improvement of Liver Function in Liver Cirrhosis Patients After Autologous MSC Injection: A Phase I-II Clinical Trial”Autologous MSCsCompletedLiver cirrhosisPhase 1/230InterventionalIran
NCT01454336“Transplantation of Autologous MSC in Decompensated Cirrhotic Patients With Pioglitazone”Autologous MSCsCompletedDecompensated liver cirrhosisPhase 13InterventionalIran
NCT02557724“Mobilization of MSCs During Liver Transplantation”MSCsCompletedLiver failure, HCCN/A35ObservationalUnited States
NCT01875081“REVIVE (Randomized Exploratory Clinical Trial to Evaluate the Safety and Effectiveness of Stem Cell Product in Alcoholic Liver Cirrhosis Patient)”Stem cellsCompletedAlcoholic liver cirrhosisPhase 272InterventionalSouth Korea
NCT01013194“Human Fetal Liver Cell Transplantation in Chronic Liver Failure”Fetal liver cellsCompletedLiver cirrhosisPhase 1/225InterventionalItaly
NCT02297867“Clinical Trial Study About Human Adipose-Derived Stem Cells in the Liver Cirrhosis”ASCsCompletedLiver cirrhosisPhase 16InterventionalChina
NCT01378182“Efficacy of In vitro Expanded Bone Marrow Derived Allogeneic MSC Transplantation Via Portal Vein or Hepatic Artery or Peripheral Vein in Patients With Wilson Cirrhosis”BM-MSCsCompletedWilson’s diseaseNA10InterventionalTurkey
NCT01120925“Autologous Bone Marrow Derived Stem Cells in Decompensated Cirrhotic Patients”BM-MSCsCompletedDecompensated liver cirrhosisPhase 1/230InterventionalIran
NCT01220492“Umbilical Cord MSCs for Patients With Liver Cirrhosis”UC-MSCsCompletedLiver cirrhosisPhase 1/2266InterventionalChina
NCT01342250“Human Umbilical Cord MSCs Transplantation for Patients With Decompensated Liver Cirrhosis”UC-MSCsCompletedLiver cirrhosisPhase 1/220InterventionalChina
NCT03468699“Autologous Bone Marrow Mononuclear Stem Cell for Children Suffering From Liver Cirrhosis Due to Biliary Atresia”BM-MSCsCompletedLiver fibrosis (biliary atresia)Phase 217InterventionalVietnam
NCT04522869“Umbilical Cord Derived MSC (UC -MSC) Transplantation for Children Suffering From Biliary Atresia”UC-MSCsCompletedPrimary biliary cirrhosisPhase 1/220InterventionalVietnam
NCT01625351“A Study of CD45RA+ Depleted Haploidentical Stem Cell Transplantation in Children With Relapsed or Refractory Solid Tumors and Lymphomas”Hematopoetic stem cellsCompletedHepatic tumorPhase 123InterventionalUnited States
NCT00003966“Defibrotide in Treating Patients With Liver Damage Following Peripheral Stem Cell Transplantation”Peripheral stem cellsCompletedVeno-occlusive diseasePhase 2151InterventionalUnited States
NCT03132337“Sinusoidal Obstruction Syndrome for Stem Cell Transplant Patients Biomarker Study”Stem cellsCompletedSinusoidal obstruction syndromeN/A80ObservationalUnited States
NCT03963921“Safety and Tolerability of HepaStem in Patients With Cirrhotic and Pre-cirrhotic NASH Patients”HepaStemCompletedNASHPhase 1/223InterventionalBelgium, Spain
NCT00956891“Therapeutic Effects of Liver Failure Patients Caused by Chronic Hepatitis B After Autologous MSCs Transplantation”Autologous MSCsCompletedLiver failureN/A158ObservationalChina
NCT02727673“Relationship Between Circulating Tumor Stem Cells and the Clinical Pathology”Tumor stem cellsCompletedHCCN/A1000ObservationalChina
NCT00358501“Defibrotide for the Treatment of Severe Hepatic Veno-Occlusive Disease in Hematopoetic Stem Cell Transplant Patients”Hematopoetic stem cellsCompletedSevere hepatic veno-occlusive diseasePhase 3134InterventionalUnited States, Canada
NCT00007813“Peripheral Stem Cell Transplantation Plus Chemotherapy in Treating Patients With Malignant Solid Tumors”Peripheral stem cellsCompletedLiver cancerPhase 121InterventionalUnited States
NCT04423237“Risk Factors and Measures to Prevent Liver and Pancreas Complications in Pediatric Patients After HSCT”Hematopoetic stem cellsCompletedLiver complicationN/A39ObservationalItaly
NCT03511794“Effectiveness of the Hepatitis B Vaccine Post-Hematopoietic Stem Cell Transplant”Hematopoetic stem cellsCompletedHepatitis BN/A52ObservationalUnited States
NCT01481649“Risk of Hepatitis B Reactivation After Bone Marrow Transplantation With Prior Hepatitis B Virus (HBV) Exposure”Stem cellsCompletedExposure to hepatitis B virusN/A69ObservationalChina
NCT00002515“Combination Chemotherapy Followed by Bone Marrow Transplantation in Treating Patients With Rare Cancer”Stem cellsCompletedHCCPhase 2N/AInterventionalUnited States
NCT06892236“Preparation of IPSC for Cell Gene Editing for the Treatment of AATD”hiPSCsRecruitingAlpha1-antitrypsin deficiencyNA3InterventionalItaly
NCT06242405“Effect of Different Frequencies of Umbilical Cord-MSCs Through Peripheral Vein in Patients with ESLD”UC-MSCsRecruitingEnd-stage liver diseaseNA92InterventionalChina
NCT06564740“Stem Cell Applications in Biliary Atresia Patients”Stem cellsRecruitingLiver fibrosis (biliary atresia)NA64InterventionalTurkey
NCT06740149“Efficacy and Safety of BMSCs (CG-BM1) for ACLF Patients”BM-MSCsRecruitingACLFPhase 1/290InterventionalChina
NCT06904755“Safety and Effectiveness of MSCs in Blood Purification for the Treatment of Liver Failure”MSCsRecruitingLiver failurePhase 110InterventionalChina
NCT05106972“Umbilical Cord MSC Transplantation for Decompensated Hepatitis B Cirrhosis”UC-MSCsRecruitingLiver cirrhosisNA30InterventionalChina
NCT05985863“Human Umbilical Cord MSC Transplantation for The Treatment of Acute-on-Chronic Liver Failure”UC-MSCsRecruitingACLFPhase 1/2150InterventionalChina
NCT04689152“Clinical Trial to Evaluate the Efficacy and Safety of Cellgram-LC Administration in Patients With Alcoholic Cirrhosis”Cellgram-LCRecruitingAlcoholic cirrhosisPhase 3200InterventionalSouth Korea
NCT03826433“hUC-MSCs (19#iSCLife®-LC) in the Treatment of Decompensated Hepatitis b Cirrhosis hepatitis b Cirrhosis”UC-MSCsRecruitingHepatitis BPhase 120InterventionalChina
NCT00382278“Safety Study of Autologous Stem Cell in Liver Cirrhosis”Autologous stem cellsTerminatedLiver cirrhosisPhase 1/215InterventionalBrazil
NCT03860155“Allogeneic ABCB5-positive Stem Cells for Treatment of Acute-on-Chronic Liver Failure”Allogeneic stem cellsTerminatedACLFPhase 1/25InterventionalGermany
NCT00923052“The Natural History of Solid Organ Cancer Stem Cells (SOCSC)”Cancer stem cellsTerminatedHepatic cancerN/A190ObservationalUnited States