Copyright
©The Author(s) 2020.
World J Gastroenterol. May 28, 2020; 26(20): 2514-2532
Published online May 28, 2020. doi: 10.3748/wjg.v26.i20.2514
Published online May 28, 2020. doi: 10.3748/wjg.v26.i20.2514
Table 1 List of evaluated studies
| Type of tumor | Ref. | Type of biofluid | Sample size | Mono- or multi- centric study | Cohort allocation | NMR (MHz) | Acquisition temperature and pulse sequences |
| PC | [70] | S | 99 (56 PC; 43 control patients: Benign pancreatic masses, pancreatitis and gallstone disease) | Mono | Calgary, Canada | 600 | 298 K, 1D Noesy: 1024 sc; 2D TOCSY, HSQC |
| PC | [67] | S | 30 (17 PC; 23 HS) | Mono | Fuzhou, China | 500 | 298 K, CPMG: 256 sc |
| PC | [68] | P | 59 (19 PC; 20 chronic pancreatitis; 20 HS) | Mono | Xi'an, China | 600 | 298 K, 1D Noesy: 64 sc |
| PC | [71] | S | 157 (122 PC/periampullary cancer; 35 benign pancreatic/periampullary disease) | Mono | Calgary, Canada | 600 | 298 K, 1D Noesy: 1024 sc; 2D TOCSY, HSQC |
| PC | [69] | P | 20 (10 PC; 10 HS) | Mono | Prague, Czech Republic | 500 | 298 K, CPMG: 128 sc |
| CRC | [87] | S | 57 (38 CRC; 19 HS) | Mono | Birmingham, United Kingdom | 800 | CPMG: 128 sc; TOCSY: 32 sc; hadamard-TOCSY: 8 scasc |
| CRC | [73] | S | 297 (153 mCRC; 139 HS) | Multi | Denmark | 600 | 310 K, CPMG: 64 sc; JRES: 1 sc |
| CRC | [72] | S | 112 (42 lCRC; 45 liver metast.; 25 extrahepatic metast.) | Mono | Calgary, Canada | 600 | 298 K, 1D Noesy: 1024 sc; 2D TOCSY, HSQC |
| CRC | [75] | P | 70 (40 CRC; 30 liver metastases from CRC) | Multi | Hamburg, Germany | 600 | 300 K, 1D Noesy, CPMG and Diff: 64 sc each |
| CRC | [74] | S | 110 (40 CRC; 32 colorectal polyp patients; 38 HS) | Mono | Xiamen, China | 600 | 298 K, CPMG: 256 sc |
| PC | [76] | U | 87(33 PDAC; 54 HS) | Mono | Verona, Italy | 600 | 300 K, 1D Noesy 32 sc; JRES and HSQC |
| PC | [77] | U | 89 (32 PDAC; 32 benign; 25 HS) | Mono | Alberta, Canada | 600 | 298 K, 1D Noesy: 32 sc |
| GC | [81] | U | 145 (75 GC; 81 HS) | Mono | Seoul, Korea | 600 | 298 K, 1D Noesy: 64 sc |
| GC | [78] | U | 123 (43 GC, 40 benign gastric disease, 40 HS) | Multi | Alberta, Canada | 600 | 298 K, 1D Noesy: 128 sc |
| CRC | [68] | U | 113 (55 CRC; 18 EC; 40 HS) | Mono | Guangdong, China | 400 | 1D Noesy: 256 sc |
| CRC | [82] | U | 62 CRC | Mono | Alberta, Canada | 600 | 298 K, 1D Noesy: 32 sc |
| CRC | [80] | U | 248 (92 CRC; 156 HS) | Mono | Seoul, Korea | 500 | NA |
| CRC | [83] | ST | 33 (21 CRC; 11 HS) | Mono | Valencia, Spain | 600 | 283 K, CPMG: 256 sc; 2D TOCSY, HSQC |
| CRC | [84] | ST | 100 (68 CRC; 32 HS) | Mono | Guangdong, China | 400 | 298 K, 1D Noesy: 64 sc |
| CRC | [86] | ST | 99 (50 CRC; 49 HS) | Mono | United Kingdom | 600 | 1D Noesy 2816 sc; 2D COSY, HSQC and HMBC |
| CRC | [85] | ST | 140 (70 CRC; 70 HS) | Mono | Guangdong, China | 400 | 298 K, 1D Noesy: 64 sc |
Table 2 Panel of altered metabolites’ levels identified in blood samples of gastrointestinal cancer patients vs healthy controls
| S | P | S | ||||||||
| PC[70] | PC[67] | PC[71] | PC[68] | PC[69] | CRC[75] | CRC[87] | CRC[73] | CRC[72] | CRC[74] | |
| 2-aminobutyrate | ↓2 | |||||||||
| 2-hydroxyisovalerate | ↓ | |||||||||
| 2-oxoglutarate | ↑1 | |||||||||
| 3-hydroxybutyrate | ↑ | ↓ | ↓ | ↑ | ↑ | ↑ | ↑ | |||
| 3-hydroxyisovalerate | ↓ | |||||||||
| Acetate | ↓ | ↑ | ↑ | |||||||
| Acetoacetate | ↑ | ↑ | ||||||||
| Acetone | ↑ | ↑ | ||||||||
| Alanine | ↓ | ↓ | ↑ | ↓ | ↓ | |||||
| Arginine | ↑ | |||||||||
| Asparagine | ↓ | |||||||||
| Beta-alanine | ↓ | |||||||||
| Citrate | ↓ | ↑ | ↓ | ↓ | ||||||
| Creatine | ↓ | ↓ | ↓ | ↑ | ||||||
| Creatinine | ↑ | |||||||||
| Ethanol | ↓ | |||||||||
| Formate | ↑ | ↓ | ||||||||
| Glucose | ↑ | |||||||||
| Glutamate | ↑ | ↑ | ↓ | ↓ | ↑ | |||||
| Glutamine | ↓ | ↓ | ↓ | ↑ | ↓ | ↑ | ↓ | |||
| Glycerol | ↑ | ↑ | ||||||||
| HDL | ↓ | |||||||||
| Histidine | ↓ | ↓ | ||||||||
| Hypoxanthine | ↑ | |||||||||
| Isobutyrate | ↓ | |||||||||
| Isoleucine | ↑ | ↓ | ↑ | |||||||
| Isopropanol | ↑ | |||||||||
| Lactate | ↓ | ↓ | ↑ | ↑ | ↓ | |||||
| LDL | ↓ | |||||||||
| Leucine | ↑ | ↓ | ↓ | |||||||
| Lysine | ↓ | ↓ | ↓ | |||||||
| Mannose | ↑ | ↑ | ↑ | |||||||
| Myo-inositol | ↑ | |||||||||
| N-acetyl glycoproteins | ↑ | ↑ | ||||||||
| O-phosphocholine | ↑ | |||||||||
| Ornithine | ↓ | |||||||||
| Phenylalanine | ↑ | ↑ | ↑ | |||||||
| Proline | ↓ | ↑ | ↓ | |||||||
| Pyruvate | ↑ | ↓ | ||||||||
| Serine | ↑ | |||||||||
| Threonine | ↓ | ↓ | ||||||||
| TMAO | ↓ | |||||||||
| Tyrosine | ↓ | ↓ | ↓ | |||||||
| Urea | ↑ | |||||||||
| Valine | ↓ | ↑ | ↓ | ↓ | ||||||
| VLDL | ↑ | |||||||||
Table 3 List of altered metabolites’ levels identified in urine samples of gastrointestinal cancer patients vs to healthy controls
| U | ||||||
| PC[76] | PC[77] | CRC[79] | CRC[80] | GC[78] | GC[81] | |
| 1-methylnicotinamide | ↑1 | ↓2 | ↓ | |||
| 2-furoylglycine | ↑ | |||||
| 2-hydroxyisobutyrate | ↑ | |||||
| 2-oxobutyrate | ↑ | |||||
| 2-phenylacetamide | ↑ | |||||
| 3-aminoisobutyrate | ↑ | ↑ | ||||
| 3-hydroxyisovalerate | ↓ | ↑ | ||||
| 4-hydroxyphenylacetate | ↑ | ↑ | ||||
| 4-pyridoxate | ↑ | |||||
| Acetate | ↑ | |||||
| Acetoacetate | ↑ | ↑ | ||||
| Acetone | ↑ | ↑ | ||||
| Acetylated compounds | ↑ | |||||
| Alanine | ↓ | ↑ | ↑ | ↑ | ||
| Aminobutyrate | ↑ | |||||
| Arginine | ↑ | |||||
| Ascorbate | ↓ | |||||
| Asparagine | ↓ | |||||
| Betaine | ↑ | |||||
| Choline | ↑ | ↓ | ||||
| Cis-aconitate | ↑ | ↑ | ||||
| Citrate | ↓ | ↓ | ||||
| Creatinine | ↓ | ↓ | ↓ | |||
| Cysteine | ↓ | |||||
| Dimethylamine | ↑ | ↓ | ||||
| Dimethyl sulfone | ↓ | |||||
| Formate | ↑ | ↑ | ||||
| Fucose | ↑ | |||||
| Glucose | ↑ | ↑ | ||||
| Glutamine | ↑ | |||||
| Glycerol | ↓ | |||||
| Glycine | ↓ | ↑ | ||||
| Glycolate | ↑ | |||||
| Guanido-acetate | ↑ | |||||
| Hippurate | ↓ | ↓ | ↓ | |||
| Histidine | ↑ | |||||
| Homocysteine | ↑ | |||||
| Hypoxanthine | ↑ | ↓ | ||||
| Indoxyl sulfate | ↑ | |||||
| Isocitrate | ↓ | |||||
| Lactate | ↑ | |||||
| Leucine | ↑ | ↑ | ||||
| Mannitol | ↑ | |||||
| Methanol | ↓ | |||||
| Methionine | ↑ | |||||
| Methylamine | ↓ | |||||
| N-acetyl serotonin | ↑ | |||||
| N-methyl hydantoin | ↑ | |||||
| O-acetyl carnitine | ↑ | ↑ | ||||
| Phenylacetyl glycine | ↑ | |||||
| Phenylalanine | ↓ | ↑ | ||||
| Putrescine | ↑ | |||||
| Succinate | ↑ | |||||
| Sucrose | ↑ | |||||
| Taurine | ↑ | ↑ | ↑ | |||
| Threonine | ↓ | |||||
| Threonine | ↑ | |||||
| TMAO | ↑ | |||||
| Trans-aconitate | ↑ | ↑ | ↑ | |||
| Trigonelline | ↓ | ↓ | ||||
| Tryptophan | ↑ | |||||
| Tyrosine | ↑ | |||||
| Urea | ↑ | |||||
| Valine | ↑ | |||||
| Xylose | ↑ | |||||
Table 4 Panel of altered metabolites’ levels identified in fecal water samples of gastrointestinal cancer patients versus healthy controls
| Fw | ||||
| CRC[83] | CRC[84] | CRC[86] | CRC[85] | |
| 4-aminohippurate | ↓2 | |||
| Acetate | ↓ | ↓ | ↓ | |
| Alanine | ↑1 | ↓ | ↑ | |
| Beta-alanine | ↓ | |||
| Butyrate | ↓ | ↓ | ↓ | |
| Cholate | ↓ | |||
| Deoxycholate | ↓ | |||
| Galactose | ↓ | |||
| Glucose | ↓ | ↓ | ||
| Glutamate | ↑ | ↑ | ||
| Glutamine | ↓ | ↓ | ||
| Glycerol | ↓ | |||
| Hexose-phosphate | ↑ | |||
| Isobutyrate | ↑ | |||
| Isoleucine | ↑ | ↓ | ↑ | |
| Isovalerate | ↑ | |||
| Lactate | ↑ | ↑ | ||
| Leucine | ↑ | ↑ | ↑ | |
| Litho deoxycholate | ↓ | |||
| Methanol | ↓ | |||
| Ornithine | ↓ | |||
| Phenylacetate | ||||
| Proline | ↑ | ↑ | ||
| Propionate | ↓ | ↓ | ||
| Succinate | ↑ | ↑ | ||
| Taurine | ↓ | |||
| Valine | ↑ | ↑ | ||
| Xylose | ↓ | |||
- Citation: Nannini G, Meoni G, Amedei A, Tenori L. Metabolomics profile in gastrointestinal cancers: Update and future perspectives. World J Gastroenterol 2020; 26(20): 2514-2532
- URL: https://www.wjgnet.com/1007-9327/full/v26/i20/2514.htm
- DOI: https://dx.doi.org/10.3748/wjg.v26.i20.2514
