Predicting a novel pathogenicity island in Helicobacter pylori by genomic barcoding

doi:10.3748/wjg.v19.i30.5006

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Aug 14, 2013 (publication date) through Nov 24, 2024

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World Journal of Gastroenterology

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1007-9327

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Baishideng Publishing Group Inc, 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA

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World J Gastroenterol. Aug 14, 2013; 19(30): 5006-5010
Published online Aug 14, 2013. doi: 10.3748/wjg.v19.i30.5006

Table 1 Pathogenicity island candidates in sequenced Helicobacter pylori genomes

	Size	GC	Barcodedistance	ORF
Wholegenome	1.5-1.7 Mbp	38.0% ± 0.2%	114.3 ± 14.9	-
cag-PAI	35 kbp	35.4% ± 0.8%	134.6 ± 20.1	20.0 ± 0.6
tfs3-PAI	30 kbp	33.0% ± 0.8%	138.0 ± 20.0	17.0 ± 3.0

PAI: Pathogenicity island; ORF: Open reading frame; GC: Guanine and cytosine.

Citation: Wang GQ, Xu JT, Xu GY, Zhang Y, Li F, Suo J. Predicting a novel pathogenicity island in Helicobacter pylori by genomic barcoding. World J Gastroenterol 2013; 19(30): 5006-5010
URL: https://www.wjgnet.com/1007-9327/full/v19/i30/5006.htm
DOI: https://dx.doi.org/10.3748/wjg.v19.i30.5006