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For: Fyderek K, Strus M, Kowalska-Duplaga K, Gosiewski T, Wędrychowicz A, Jedynak-Wąsowicz U, Sładek M, Pieczarkowski S, Adamski P, Kochan P, Heczko PB. Mucosal bacterial microflora and mucus layer thickness in adolescents with inflammatory bowel disease. World J Gastroenterol 2009; 15(42): 5287-5294 [PMID: 19908336 DOI: 10.3748/wjg.15.5287]
URL: https://www.wjgnet.com/1007-9327/full/v15/i42/5287.htm
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Maiko Sasaki, Jan-Michael A. Klapproth. The Role of Bacteria in the Pathogenesis of Ulcerative Colitis. Journal of Signal Transduction 2012; 2012 doi: 10.1155/2012/704953
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Dominika Głąbska, Dominika Guzek, Karolina Gałązka, Gustaw Lech. Therapeutic Potential of Proanthocyanidins in Ulcerative Colitis in Remission. Journal of Clinical Medicine 2020; 9(3) doi: 10.3390/jcm9030771
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Maryse Dagenais, Todd Douglas, Maya Saleh. Role of programmed necrosis and cell death in intestinal inflammation. Current Opinion in Gastroenterology 2014; 30(6) doi: 10.1097/MOG.0000000000000117
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Emily K. Wright, Michael A. Kamm, Shu Mei Teo, Michael Inouye, Josef Wagner, Carl D. Kirkwood. Recent Advances in Characterizing the Gastrointestinal Microbiome in Crohnʼs Disease. Inflammatory Bowel Diseases 2015;  doi: 10.1097/MIB.0000000000000382
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Natalie Steck, Micha Hoffmann, Irina G. Sava, Sandra C. Kim, Hannes Hahne, Susan L. Tonkonogy, Katrin Mair, Dagmar Krueger, Mihaela Pruteanu, Fergus Shanahan, Roger Vogelmann, Michael Schemann, Bernhard Kuster, R. Balfor Sartor, Dirk Haller. Enterococcus faecalis Metalloprotease Compromises Epithelial Barrier and Contributes to Intestinal Inflammation. Gastroenterology 2011; 141(3) doi: 10.1053/j.gastro.2011.05.035
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Esther Swee Lan Chong. A potential role of probiotics in colorectal cancer prevention: review of possible mechanisms of action. World Journal of Microbiology and Biotechnology 2014; 30(2) doi: 10.1007/s11274-013-1499-6
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Natalie Steck, Kerstin Mueller, Michael Schemann, Dirk Haller. Republished: Bacterial proteases in IBD and IBS. Postgraduate Medical Journal 2013; 89(1047) doi: 10.1136/postgradmedj-2011-300775rep
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Mohammad Hosein Farzaei, Roodabeh Bahramsoltani, Amir Hossein Abdolghaffari, Hamid Reza Sodagari, Shadi A. Esfahani, Nima Rezaei. A mechanistic review on plant-derived natural compounds as dietary supplements for prevention of inflammatory bowel disease. Expert Review of Gastroenterology & Hepatology 2016; 10(6) doi: 10.1586/17474124.2016.1145546
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Stefan H. Oehlers, Maria Vega Flores, Christopher J. Hall, Kathryn E. Crosier, Philip S. Crosier. Retinoic acid suppresses intestinal mucus production and exacerbates experimental enterocolitis. Disease Models & Mechanisms 2012;  doi: 10.1242/dmm.009365
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Pallobi Dutta, Kaushik Mukherjee, Arpita Saha, Ankita Das, Hemant Ramachandra Badwaik, Tapan Kumar Giri. Colonic delivery of surface charge decorated nanocarrier for IBD therapy. Journal of Drug Delivery Science and Technology 2022; 76 doi: 10.1016/j.jddst.2022.103754
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Rosemarie De Weirdt, Emma Hernandez‐Sanabria, Veerle Fievez, Eva Mees, Annelies Geirnaert, Florence Van Herreweghen, Ramiro Vilchez‐Vargas, Pieter Van den Abbeele, Ruy Jauregui, Dietmar H. Pieper, Bruno Vlaeminck, Tom Van de Wiele. Mucosa‐associated biohydrogenating microbes protect the simulated colon microbiome from stress associated with high concentrations of poly‐unsaturated fat. Environmental Microbiology 2017; 19(2) doi: 10.1111/1462-2920.13622
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Tomasz Gosiewski, Magdalena Strus, Krzysztof Fyderek, Kinga Kowalska‐Duplaga, Andrzej Wedrychowicz, Urszula Jedynak‐Wasowicz, Malgorzata Sladek, Stanislaw Pieczarkowski, Pawel Adamski, Piotr B. Heczko. Horizontal Distribution of the Fecal Microbiota in Adolescents With Inflammatory Bowel Disease. Journal of Pediatric Gastroenterology and Nutrition 2012; 54(1) doi: 10.1097/MPG.0b013e31822d53e5
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Pearl D. Houghteling, W. Allan Walker. Why Is Initial Bacterial Colonization of the Intestine Important to Infants' and Children's Health?. Journal of Pediatric Gastroenterology and Nutrition 2015; 60(3) doi: 10.1097/MPG.0000000000000597
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Min Xu, Baohong Wang, Yiqi Fu, Yanfei Chen, Fengling Yang, Haifeng Lu, Yunbo Chen, Jiali Xu, Lanjuan Li. Changes of Fecal Bifidobacterium Species in Adult Patients with Hepatitis B Virus-Induced Chronic Liver Disease. Microbial Ecology 2012; 63(2) doi: 10.1007/s00248-011-9925-5
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Svetlana Becker, Tobias A. Oelschlaeger, Andy Wullaert, Manolis Pasparakis, Jan Wehkamp, Eduard F. Stange, Michael Gersemann, Hang Thi Thu Nguyen. Bacteria Regulate Intestinal Epithelial Cell Differentiation Factors Both In Vitro and In Vivo. PLoS ONE 2013; 8(2) doi: 10.1371/journal.pone.0055620
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Farnaz Heidarian, Zahra Noormohammadi, Hamid Asadzadeh Aghdaei, Masoud Alebouyeh. Relative Abundance of Streptococcus spp. and its Association with Disease Activity in Inflammatory Bowel Disease Patients Compared with Controls. Archives of Clinical Infectious Diseases 2017; (In Press) doi: 10.5812/archcid.57291
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A. L. Maldonado-Contreras, Beth A. McCormick. Intestinal epithelial cells and their role in innate mucosal immunity. Cell and Tissue Research 2011; 343(1) doi: 10.1007/s00441-010-1082-5
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V. Morampudi, U. Dalwadi, G. Bhinder, H.P. Sham, S.K. Gill, J. Chan, K S B Bergstrom, T. Huang, C. Ma, K. Jacobson, D.L. Gibson, B.A. Vallance. The goblet cell-derived mediator RELM-β drives spontaneous colitis in Muc2-deficient mice by promoting commensal microbial dysbiosis. Mucosal Immunology 2016; 9(5) doi: 10.1038/mi.2015.140
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Warren M. Miner-Williams, Paul J. Moughan. Intestinal barrier dysfunction: implications for chronic inflammatory conditions of the bowel. Nutrition Research Reviews 2016; 29(1) doi: 10.1017/S0954422416000019
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Eric M Brown, Manish Sadarangani, B Brett Finlay. The role of the immune system in governing host-microbe interactions in the intestine. Nature Immunology 2013; 14(7) doi: 10.1038/ni.2611
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Inflammatory Disorders, Part A. Advances in Protein Chemistry and Structural Biology 2020; 119 doi: 10.1016/bs.apcsb.2019.08.009
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Daniela Elena Serban. Microbiota in Inflammatory Bowel Disease Pathogenesis and Therapy. Nutrition in Clinical Practice 2015; 30(6) doi: 10.1177/0884533615606898
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Giuseppe Guagliano, Lucia Boeri, Marta Merli, Hongji Yan, Francesco Briatico Vangosa, Livia Visai, Sonja Visentin, Paola Petrini, Lorenzo Sardelli. The hidden piece in inflammatory bowel diseases: The significance of intestinal mucus in mediating the bacteria-cells crosstalk. Materials Today Bio 2025; 33 doi: 10.1016/j.mtbio.2025.101937
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Hao Yu, Yonghong He, Xin Zhang, Zhihong Peng, Yongtao Yang, Rong Zhu, Jianying Bai, Yin Tian, Xiaohuan Li, Wensheng Chen, Dianchun Fang, Rongquan Wang, Vladimir N. Uversky. The Rat IgGFcγBP and Muc2 C-Terminal Domains and TFF3 in Two Intestinal Mucus Layers Bind Together by Covalent Interaction. PLoS ONE 2011; 6(5) doi: 10.1371/journal.pone.0020334
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Manuela G. Neuman, Radu M. Nanau. Inflammatory bowel disease: role of diet, microbiota, life style. Translational Research 2012; 160(1) doi: 10.1016/j.trsl.2011.09.001
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Madhur D. Shastri, Wai Chin Chong, Ravichandra Vemuri, Christopher J. Martoni, Santosh Adhikari, Harinder Bhullar, Dale Kunde, Stephen G. Tristram, Rajaraman D. Eri. Streptococcus Thermophilus UASt-09 Upregulates Goblet Cell Activity in Colonic Epithelial Cells to a Greater Degree than other Probiotic Strains. Microorganisms 2020; 8(11) doi: 10.3390/microorganisms8111758
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Mehrbod Estaki, Douglas W. Morck, Sanjoy Ghosh, Candice Quin, Jason Pither, Jacqueline A. Barnett, Sandeep K. Gill, Deanna L. Gibson, Morgan G. I. Langille. Physical Activity Shapes the Intestinal Microbiome and Immunity of Healthy Mice but Has No Protective Effects against Colitis in MUC2 −/− Mice . mSystems 2020; 5(5) doi: 10.1128/mSystems.00515-20
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Monica Viladomiu, Raquel Hontecillas, Lijuan Yuan, Pinyi Lu, Josep Bassaganya-Riera. Nutritional protective mechanisms against gut inflammation. The Journal of Nutritional Biochemistry 2013; 24(6) doi: 10.1016/j.jnutbio.2013.01.006
29
Yuta Kinoshita, Seiya Arita, Haruka Murazoe, Kazuo Kitamura, Shinya Ashizuka, Kyoko Inagaki-Ohara. Subcutaneously administered adrenomedullin exerts a potent therapeutic effect in a murine model of ulcerative colitis. Human Cell 2019; 32(1) doi: 10.1007/s13577-018-0219-9
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E. V. Shrainer, A. I. Khavkin, V. V. Vlasov. Intestinal microbiocenosis in patients with recurrent <i>Clostridium difficile</i> infection, ulcerative colitis and irritable bowel syndrome after transplantation of fecal microflora. Experimental and Clinical Gastroenterology 2020; (7) doi: 10.31146/1682-8658-ecg-179-7-69-77
31
Karthika Muthuramalingam, Vineet Singh, Changmin Choi, Seung In Choi, Young Mee Kim, Tatsuya Unno, Moonjae Cho. Dietary intervention using (1,3)/(1,6)-β-glucan, a fungus-derived soluble prebiotic ameliorates high-fat diet-induced metabolic distress and alters beneficially the gut microbiota in mice model. European Journal of Nutrition 2020; 59(6) doi: 10.1007/s00394-019-02110-5
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Hui Jiang, Congying Chen, Jun Gao. Extensive Summary of the Important Roles of Indole Propionic Acid, a Gut Microbial Metabolite in Host Health and Disease. Nutrients 2022; 15(1) doi: 10.3390/nu15010151
33
Marie-Agnès Pélissier, Nadia Vasquez, Ramadass Balamurugan, Ester Pereira, Flore Dossou-Yovo, Antonia Suau, Philippe Pochart, Fabien Magne. Metronidazole effects on microbiota and mucus layer thickness in the rat gut. FEMS Microbiology Ecology 2010;  doi: 10.1111/j.1574-6941.2010.00916.x
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L. A. Edwards, M. Lucas, E. A. Edwards, F. Torrente, R. B. Heuschkel, N. J. Klein, S. H. Murch, M. Bajaj-Elliott, A. D. Phillips. Aberrant response to commensal Bacteroides thetaiotaomicron in Crohnʼs disease. Inflammatory Bowel Diseases 2011; 17(5) doi: 10.1002/ibd.21501
35
Henok Gebrebrhan, Cheli Kambaran, Aida Sivro, Wendy Adhiambo, Naomi Siele, Michael G. Becker, Jie Li, Sandra Choi, Ruth S. Mwatelah, N. Vincent Reyes, Maureen Akolo, Peter Njogu, François Cholette, John Ho, John Kim, Shelley W. Peterson, Irene Martin, Paul Sandstrom, Supriya D. Mehta, Robert R. Lorway, T. Blake Ball, Joshua Kimani, Paul J. Mclaren, Hezhao Ji, Lyle R. McKinnon. Rectal microbiota diversity in Kenyan MSM is inversely associated with frequency of receptive anal sex, independent of HIV status. AIDS 2021; 35(7) doi: 10.1097/QAD.0000000000002829
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Patrick Martin Gillevet, Puneet Puri. Zakim and Boyer's Hepatology. 2018;  doi: 10.1016/B978-0-323-37591-7.00003-3
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Mei Zhang, Xiao-Jiao Yang. Effects of a high fat diet on intestinal microbiota and gastrointestinal diseases. World Journal of Gastroenterology 2016; 22(40): 8905-8909 doi: 10.3748/wjg.v22.i40.8905
38
Nabeetha A. Nagalingam, Susan V. Lynch. Role of the microbiota in inflammatory bowel diseases. Inflammatory Bowel Diseases 2012; 18(5) doi: 10.1002/ibd.21866
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Fernanda Brito, Cyrla Zaltman, Ana T.P. Carvalho, Ricardo G. Fischer, Rutger Persson, Anders Gustafsson, Carlos M.S. Figueredo. Subgingival microflora in inflammatory bowel disease patients with untreated periodontitis. European Journal of Gastroenterology & Hepatology 2013; 25(2) doi: 10.1097/MEG.0b013e32835a2b70
40
Anna Stochel-Gaudyn, Krzysztof Fyderek, Paweł Kościelniak. Serum trace elements profile in the pediatric inflammatory bowel disease progress evaluation. Journal of Trace Elements in Medicine and Biology 2019; 55 doi: 10.1016/j.jtemb.2019.06.016
41
Xinyu Wang, LinLin He, Yue Dong, Xiali Qin, Hu Zhang, Bangmao Wang, Sinan Wang, Hailong Cao. Mucosa-associated bacteria and metabolites in inflammatory bowel disease: from inside to insight. npj Biofilms and Microbiomes 2026; 12(1) doi: 10.1038/s41522-025-00887-4
42
Williams Turpin, Ashleigh Goethel, Larbi Bedrani, Kenneth Croitoru, MDCM. Determinants of IBD Heritability: Genes, Bugs, and More. Inflammatory Bowel Diseases 2018; 24(6) doi: 10.1093/ibd/izy085
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Dae Young Cheung, Tae Ho Kim. Helicobacter pyloriin Human Stomach: Can It Be Called Mutualism or a Disease?. The Korean Journal of Gastroenterology 2012; 59(5) doi: 10.4166/kjg.2012.59.5.329
44
Sang Hoon Lee, Jae Geun Song, Hyo-Kyung Han. Site-selective oral delivery of therapeutic antibodies to the inflamed colon via a folic acid-grafted organic/inorganic hybrid nanocomposite system. Acta Pharmaceutica Sinica B 2022; 12(11) doi: 10.1016/j.apsb.2022.06.006
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S. I. Sitkin, T. Ya. Vakhitov, E. V. Demyanova. Microbiome, gut dysbiosis and inflammatory bowel disease: That moment when the function is more important than taxonomy. Almanac of Clinical Medicine 2018; 46(5) doi: 10.18786/2072-0505-2018-46-5-396-425
46
R. De Weirdt, E. Coenen, B. Vlaeminck, V. Fievez, P. Van den Abbeele, T. Van de Wiele. A simulated mucus layer protects Lactobacillus reuteri from the inhibitory effects of linoleic acid. Beneficial Microbes 2013; 4(4) doi: 10.3920/BM2013.0017
47
Rok Orel, Tina Kamhi Trop. Intestinal microbiota, probiotics and prebiotics in inflammatory bowel disease. World Journal of Gastroenterology 2014; 20(33): 11505-11524 doi: 10.3748/wjg.v20.i33.11505
48
Qianqian Yao, Linlin Fan, Nan Zheng, Christophe Blecker, Véronique Delcenserie, Huiying Li, Jiaqi Wang. 2′-Fucosyllactose Ameliorates Inflammatory Bowel Disease by Modulating Gut Microbiota and Promoting MUC2 Expression. Frontiers in Nutrition 2022; 9 doi: 10.3389/fnut.2022.822020
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Xiaowei Chen, Haixiang Sun, Fei Jiang, Yan Shen, Xin Li, Xueju Hu, Xiaobing Shen, Pingmin Wei. Alteration of the gut microbiota associated with childhood obesity by 16S rRNA gene sequencing. PeerJ 2020; 8 doi: 10.7717/peerj.8317
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Chen Bai, Tiegang Liu, Jingnan Xu, Xueyan Ma, Ling Huang, Shaoyang Liu, He Yu, Jianxin Chen, Xiaohong Gu. Effect of High Calorie Diet on Intestinal Flora in LPS-Induced Pneumonia Rats. Scientific Reports 2020; 10(1) doi: 10.1038/s41598-020-58632-0
51
Kinga Kowalska-Duplaga, Tomasz Gosiewski, Przemysław Kapusta, Agnieszka Sroka-Oleksiak, Andrzej Wędrychowicz, Stanisław Pieczarkowski, Agnieszka H. Ludwig-Słomczyńska, Paweł P. Wołkow, Krzysztof Fyderek. Differences in the intestinal microbiome of healthy children and patients with newly diagnosed Crohn’s disease. Scientific Reports 2019; 9(1) doi: 10.1038/s41598-019-55290-9
52
Wenjuan Liu, Zirong Dong, Kaiheng Liu, Yi Lu, Wei Wu, Jianping Qi, Zhongjian Chen. Targeting strategies of oral nano-delivery systems for treating inflammatory bowel disease. International Journal of Pharmaceutics 2021; 600 doi: 10.1016/j.ijpharm.2021.120461
53
Natalie Steck, Kerstin Mueller, Michael Schemann, Dirk Haller. Bacterial proteases in IBD and IBS. Gut 2012; 61(11) doi: 10.1136/gutjnl-2011-300775
54
Jeremy Dupaul-Chicoine, Maryse Dagenais, Maya Saleh. Crosstalk Between the Intestinal Microbiota and the Innate Immune System in Intestinal Homeostasis and Inflammatory Bowel Disease. Inflammatory Bowel Diseases 2013; 19(10) doi: 10.1097/MIB.0b013e31828dcac7
55
Qianqian Yao, Huiying Li, Linlin Fan, Yangdong Zhang, Shengguo Zhao, Nan Zheng, Jiaqi Wang. Dietary Regulation of the Crosstalk between Gut Microbiome and Immune Response in Inflammatory Bowel Disease. Foods 2021; 10(2) doi: 10.3390/foods10020368
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Danisa M. Bescucci, Paul E. Moote, Rodrigo Ortega Polo, Richard R. E. Uwiera, G. Douglas Inglis, Christopher A. Elkins. Salmonella enterica Serovar Typhimurium Temporally Modulates the Enteric Microbiota and Host Responses To Overcome Colonization Resistance in Swine. Applied and Environmental Microbiology 2020; 86(21) doi: 10.1128/AEM.01569-20
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Dominika Skolmowska, Dominika Głąbska, Dominika Guzek, Gustaw Lech. Association between Dietary Isoflavone Intake and Ulcerative Colitis Symptoms in Polish Caucasian Individuals. Nutrients 2019; 11(8) doi: 10.3390/nu11081936
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Thomas Clavel, Cédric Charrier, Dirk Haller. Streptococcus danieliae sp. nov., a novel bacterium isolated from the caecum of a mouse. Archives of Microbiology 2013; 195(1) doi: 10.1007/s00203-012-0846-6
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Marta Wlodarska, Chengwei Luo, Raivo Kolde, Eva d’Hennezel, John W. Annand, Cortney E. Heim, Philipp Krastel, Esther K. Schmitt, Abdifatah S. Omar, Elizabeth A. Creasey, Ashley L. Garner, Sina Mohammadi, Daniel J. O’Connell, Sahar Abubucker, Timothy D. Arthur, Eric A. Franzosa, Curtis Huttenhower, Leon O. Murphy, Henry J. Haiser, Hera Vlamakis, Jeffrey A. Porter, Ramnik J. Xavier. Indoleacrylic Acid Produced by Commensal Peptostreptococcus Species Suppresses Inflammation. Cell Host & Microbe 2017; 22(1) doi: 10.1016/j.chom.2017.06.007
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Li Cao, Xiaojun Yang, Feifei Sun, Chanjuan Liu, Junhu Yao. <i>Lactobacillus </i>Strain with High Adhesion Stimulates Intestinal Mucin Expression in Broiler. The Journal of Poultry Science 2012; 49(4) doi: 10.2141/jpsa.0110146
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Jiayu Ye, Natasha Haskey, Hansika Dadlani, Hatem Zubaidi, Jacqueline A. Barnett, Sanjoy Ghosh, Deanna L. Gibson. Deletion of mucin 2 induces colitis with concomitant metabolic abnormalities in mice. American Journal of Physiology-Gastrointestinal and Liver Physiology 2021; 320(5) doi: 10.1152/ajpgi.00277.2020
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Jenny K. Gustafsson, Anna Ermund, Malin E. V. Johansson, André Schütte, Gunnar C. Hansson, Henrik Sjövall. An ex vivo method for studying mucus formation, properties, and thickness in human colonic biopsies and mouse small and large intestinal explants. American Journal of Physiology-Gastrointestinal and Liver Physiology 2012; 302(4) doi: 10.1152/ajpgi.00405.2011
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Antonia Piazzesi, Lorenza Putignani. Extremely small and incredibly close: Gut microbes as modulators of inflammation and targets for therapeutic intervention. Frontiers in Microbiology 2022; 13 doi: 10.3389/fmicb.2022.958346
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Chin Wen Png, Sara K Lindén, Kristen S Gilshenan, Erwin G Zoetendal, Chris S McSweeney, Lindsay I Sly, Michael A McGuckin, Timothy H J Florin. Mucolytic Bacteria With Increased Prevalence in IBD Mucosa Augment In Vitro Utilization of Mucin by Other Bacteria. American Journal of Gastroenterology 2010; 105(11) doi: 10.1038/ajg.2010.281
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Ahmed A. Almousa, Marc Morris, Sharyle Fowler, Jennifer Jones, Jane Alcorn. Elevation of serum pyruvate kinase M2 (PKM2) in IBD and its relationship to IBD indices. Clinical Biochemistry 2018; 53 doi: 10.1016/j.clinbiochem.2017.12.007
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Yiyoung Kwon, Yeonjae Jung, Hyun-Seok Oh, Eun Sil Kim, Yoon Zi kim, Yon Ho Choe, Mi Jin Kim. Comparison of clinical effectiveness and microbiome impact between specific polymeric and monomeric diet for exclusive enteral nutrition in pediatric Crohn's disease: a prospective cohort study. Journal of Functional Foods 2025; 133 doi: 10.1016/j.jff.2025.106997
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Sara Cicchinelli, Stefania Gemma, Giulia Pignataro, Andrea Piccioni, Veronica Ojetti, Antonio Gasbarrini, Francesco Franceschi, Marcello Candelli. Intestinal Fibrogenesis in Inflammatory Bowel Diseases: Exploring the Potential Role of Gut Microbiota Metabolites as Modulators. Pharmaceuticals 2024; 17(4) doi: 10.3390/ph17040490
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Bärbel Stecher. Metabolism and Bacterial Pathogenesis. 2015;  doi: 10.1128/9781555818883.ch14
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Dominika Salamon, Tomasz Gosiewski, Agnieszka Krawczyk, Agnieszka Sroka-Oleksiak, Mariusz Duplaga, Krzysztof Fyderek, Kinga Kowalska-Duplaga. Quantitative changes in selected bacteria in the stool during the treatment of Crohn's disease. Advances in Medical Sciences 2020; 65(2) doi: 10.1016/j.advms.2020.06.003
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Philip Smith, Jay Siddharth, Ruth Pearson, Nicholas Holway, Mark Shaxted, Matt Butler, Natalie Clark, Joanna Jamontt, Robert P. Watson, Devika Sanmugalingam, Scott J. Parkinson, Jacques Ravel. Host Genetics and Environmental Factors Regulate Ecological Succession of the Mouse Colon Tissue-Associated Microbiota. PLoS ONE 2012; 7(1) doi: 10.1371/journal.pone.0030273
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Piotr B. Heczko, Milena Giemza, Weronika Ponikiewska, Magdalena Strus. Importance of Lactobacilli for Human Health. Microorganisms 2024; 12(12) doi: 10.3390/microorganisms12122382
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Shiva T. Radhakrishnan, Benjamin H. Mullish, Marton L. Olbei, Nathan P. Danckert, Maria A. Valdivia-Garcia, Jose I. Serrano-Contreras, Despoina Chrysostomou, Sharmili Balarajah, Robert W. Perry, John P. Thomas, Lejla Potari-Gul, Dezso Modos, Lucy C. Hicks, Nick Powell, Timothy R. Orchard, Jia V. Li, Julian R. Marchesi, Tamas Korcsmaros, James L. Alexander, Horace R. T. Williams. Deciphering the microbiome–metabolome landscape of an inflammatory bowel disease inception cohort. Gut Microbes 2025; 17(1) doi: 10.1080/19490976.2025.2527863
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Roujie Huang, Fei Wu, Qian Zhou, Wei Wei, Juan Yue, Bo Xiao, Zhaohui Luo. Lactobacillus and intestinal diseases: Mechanisms of action and clinical applications. Microbiological Research 2022; 260 doi: 10.1016/j.micres.2022.127019
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Johanna Maukonen, Kaija-Leena Kolho, Monika Paasela, Jarno Honkanen, Paula Klemetti, Outi Vaarala, Maria Saarela. Altered Fecal Microbiota in Paediatric Inflammatory Bowel Disease. Journal of Crohn's and Colitis 2015; 9(12) doi: 10.1093/ecco-jcc/jjv147
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Ashwin N. Ananthakrishnan, Ramnik J. Xavier, Daniel K. Podolsky. Yamada' s Textbook of Gastroenterology. 2015;  doi: 10.1002/9781118512074.ch70
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Vladimir I. Simanenkov, Igor V. Maev, Olga N. Tkacheva, Sergei A. Alekseenko, Dmitry Andreev, Natalia V. Bakulina, Igor G. Bakulin, Dmitry S. Bordin, Timur D. Vlasov, Natalya M. Vorobyeva, Vladimir B. Grinevich, Irina V. Gubonina, Michail Y. Drobizhev, Nikolay S. Efremov, Andrey E. Karateev, Yulia V. Kotovskaya, Iurii Kravchuk, Grigory G. Krivoborodov, Ekaterina V. Kulchavenya, Aleksander M. Lila, Marina V. Maevskaya, Anna S. Nekrasova, Elena A. Poluektova, Tatiana V. Popkova, Oleg A. Sablin, Olga I. Solovyeva, Alexander N. Suvorov, Galina N. Tarasova, Dmity I. Trukhan, Anastasia V. Fedotova. Epithelial protective therapy in comorbid diseases. Practical Guidelines for Physicians. Terapevticheskii arkhiv 2022; 94(8) doi: 10.26442/00403660.2022.08.201523
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Cong Zhang, Huixin He, Xiaoyu Li, Yongwen Ouyang, Qinghua Lu, Peizhu Su, Zhaotao Li. The Role of Piezo-Type Mechanosensitive Ion Channel Component 1 in Inflammatory Bowel Disease. Journal of Innate Immunity 2025; 17(1) doi: 10.1159/000548003
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Misagh Alipour, Deenaz Zaidi, Rosica Valcheva, Juan Jovel, Inés Martínez, Consolato Sergi, Jens Walter, Andrew L. Mason, Gane Ka-Shu Wong, Levinus A. Dieleman, Matthew W. Carroll, Hien Q. Huynh, Eytan Wine. Mucosal Barrier Depletion and Loss of Bacterial Diversity are Primary Abnormalities in Paediatric Ulcerative Colitis. Journal of Crohn's and Colitis 2016; 10(4) doi: 10.1093/ecco-jcc/jjv223
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Rodrigo Bibiloni, Eduardo J. Schiffrin. Intestinal Host-Microbe Interactions under Physiological and Pathological Conditions. International Journal of Inflammation 2010; 2010 doi: 10.4061/2010/386956
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Rebeca Martín, Laure Laval, Florian Chain, Sylvie Miquel, Jane Natividad, Claire Cherbuy, Harry Sokol, Elena F. Verdu, Johan van Hylckama Vlieg, Luis G. Bermudez-Humaran, Tamara Smokvina, Philippe Langella. Bifidobacterium animalis ssp. lactis CNCM-I2494 Restores Gut Barrier Permeability in Chronically Low-Grade Inflamed Mice. Frontiers in Microbiology 2016; 7 doi: 10.3389/fmicb.2016.00608
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María García-Díaz, Ditlev Birch, Feng Wan, Hanne Mørck Nielsen. The role of mucus as an invisible cloak to transepithelial drug delivery by nanoparticles. Advanced Drug Delivery Reviews 2018; 124 doi: 10.1016/j.addr.2017.11.002
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Chiara Anna Maria Fois, Thi Yen Loan Le, Aaron Schindeler, Sina Naficy, Dale David McClure, Mark Norman Read, Peter Valtchev, Ali Khademhosseini, Fariba Dehghani. Models of the Gut for Analyzing the Impact of Food and Drugs. Advanced Healthcare Materials 2019; 8(21) doi: 10.1002/adhm.201900968
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