1
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Gerald A, na ayuddhaya KP, McCandless M, Hsu P, Pang J, Mankad A, Chu A, Aihara H, Russo S. Ex Vivo Evaluation of a Soft Optical Blood Sensor for Colonoscopy. DEVICE 2024; 2:100422. [PMID: 39678941 PMCID: PMC11637413 DOI: 10.1016/j.device.2024.100422] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/17/2024]
Abstract
Colonoscopies are vital procedures allowing diagnosis of colorectal cancer and other gastrointestinal diseases. However, excessive forces may be applied to the colon during navigation. This can cause bleeding, especially in patients presenting inflammatory bowel diseases. The endoscopist is often unable to detect bleeding as visualization is limited to the distal tip camera of the endoscope. Thus, there is a need to have bleeding detection capabilities behind the device tip. This work presents a soft optical blood sensor that can be mounted onto a colonoscope. The presence of blood in the sensor's microchannel causes a reduction in optical transmission, and the endoscopist is alerted. We evaluate the sensor safety and performance ex vivo with a cohort of 10 endoscopists (novices and experts). We demonstrate the ability of the sensor to rapidly identify bleeding and easily integrate into the clinical workflow, without significantly affecting navigation time and the users' learning curve.
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Affiliation(s)
- Arincheyan Gerald
- Department of Mechanical Engineering, Boston University, Boston, MA 02215, USA
| | | | - Max McCandless
- Department of Mechanical Engineering, Boston University, Boston, MA 02215, USA
| | - Patra Hsu
- Department of Mechanical Engineering, Boston University, Boston, MA 02215, USA
| | - Johann Pang
- Department of Biomedical Engineering, Boston University, Boston, MA 02215, USA
| | - Arnav Mankad
- Department of Biomedical Engineering, Boston University, Boston, MA 02215, USA
| | - Addison Chu
- Department of Mechanical Engineering, Boston University, Boston, MA 02215, USA
| | - Hiroyuki Aihara
- Brigham and Women’s Hospital, Harvard Medical School, Boston, MA 02115, USA
| | - Sheila Russo
- Department of Mechanical Engineering, Boston University, Boston, MA 02215, USA
- Division of Materials Science and Engineering, Boston University, Boston, MA 02215, USA
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2
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Musha A, Hasnat R, Mamun AA, Ping EP, Ghosh T. Computer-Aided Bleeding Detection Algorithms for Capsule Endoscopy: A Systematic Review. SENSORS (BASEL, SWITZERLAND) 2023; 23:7170. [PMID: 37631707 PMCID: PMC10459126 DOI: 10.3390/s23167170] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/27/2023] [Revised: 08/08/2023] [Accepted: 08/10/2023] [Indexed: 08/27/2023]
Abstract
Capsule endoscopy (CE) is a widely used medical imaging tool for the diagnosis of gastrointestinal tract abnormalities like bleeding. However, CE captures a huge number of image frames, constituting a time-consuming and tedious task for medical experts to manually inspect. To address this issue, researchers have focused on computer-aided bleeding detection systems to automatically identify bleeding in real time. This paper presents a systematic review of the available state-of-the-art computer-aided bleeding detection algorithms for capsule endoscopy. The review was carried out by searching five different repositories (Scopus, PubMed, IEEE Xplore, ACM Digital Library, and ScienceDirect) for all original publications on computer-aided bleeding detection published between 2001 and 2023. The Preferred Reporting Items for Systematic Review and Meta-Analyses (PRISMA) methodology was used to perform the review, and 147 full texts of scientific papers were reviewed. The contributions of this paper are: (I) a taxonomy for computer-aided bleeding detection algorithms for capsule endoscopy is identified; (II) the available state-of-the-art computer-aided bleeding detection algorithms, including various color spaces (RGB, HSV, etc.), feature extraction techniques, and classifiers, are discussed; and (III) the most effective algorithms for practical use are identified. Finally, the paper is concluded by providing future direction for computer-aided bleeding detection research.
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Affiliation(s)
- Ahmmad Musha
- Department of Electrical and Electronic Engineering, Pabna University of Science and Technology, Pabna 6600, Bangladesh; (A.M.); (R.H.)
| | - Rehnuma Hasnat
- Department of Electrical and Electronic Engineering, Pabna University of Science and Technology, Pabna 6600, Bangladesh; (A.M.); (R.H.)
| | - Abdullah Al Mamun
- Faculty of Engineering and Technology, Multimedia University, Melaka 75450, Malaysia;
| | - Em Poh Ping
- Faculty of Engineering and Technology, Multimedia University, Melaka 75450, Malaysia;
| | - Tonmoy Ghosh
- Department of Electrical and Computer Engineering, The University of Alabama, Tuscaloosa, AL 35487, USA;
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3
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Satrya GB, Ramatryana INA, Shin SY. Compressive Sensing of Medical Images Based on HSV Color Space. SENSORS (BASEL, SWITZERLAND) 2023; 23:2616. [PMID: 36904821 PMCID: PMC10006955 DOI: 10.3390/s23052616] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/06/2022] [Revised: 02/06/2023] [Accepted: 02/21/2023] [Indexed: 06/18/2023]
Abstract
Recently, compressive sensing (CS) schemes have been studied as a new compression modality that exploits the sensing matrix in the measurement scheme and the reconstruction scheme to recover the compressed signal. In addition, CS is exploited in medical imaging (MI) to support efficient sampling, compression, transmission, and storage of a large amount of MI. Although CS of MI has been extensively investigated, the effect of color space in CS of MI has not yet been studied in the literature. To fulfill these requirements, this article proposes a novel CS of MI based on hue-saturation value (HSV), using spread spectrum Fourier sampling (SSFS) and sparsity averaging with reweighted analysis (SARA). An HSV loop that performs SSFS is proposed to obtain a compressed signal. Next, HSV-SARA is proposed to reconstruct MI from the compressed signal. A set of color MIs is investigated, such as colonoscopy, magnetic resonance imaging of the brain and eye, and wireless capsule endoscopy images. Experiments were performed to show the superiority of HSV-SARA over benchmark methods in terms of signal-to-noise ratio (SNR), structural similarity (SSIM) index, and measurement rate (MR). The experiments showed that a color MI, with a resolution of 256×256 pixels, could be compressed by the proposed CS at MR of 0.1, and could be improved in terms of SNR being 15.17% and SSIM being 2.53%. The proposed HSV-SARA can be a solution for color medical image compression and sampling to improve the image acquisition of medical devices.
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Affiliation(s)
| | - I Nyoman Apraz Ramatryana
- Department of IT Convergence Engineering, Kumoh National Institute of Technology, Gumi 39177, Republic of Korea
| | - Soo Young Shin
- Department of IT Convergence Engineering, Kumoh National Institute of Technology, Gumi 39177, Republic of Korea
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4
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Galati JS, Duve RJ, O'Mara M, Gross SA. Artificial intelligence in gastroenterology: A narrative review. Artif Intell Gastroenterol 2022; 3:117-141. [DOI: 10.35712/aig.v3.i5.117] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/09/2022] [Revised: 11/21/2022] [Accepted: 12/21/2022] [Indexed: 12/28/2022] Open
Abstract
Artificial intelligence (AI) is a complex concept, broadly defined in medicine as the development of computer systems to perform tasks that require human intelligence. It has the capacity to revolutionize medicine by increasing efficiency, expediting data and image analysis and identifying patterns, trends and associations in large datasets. Within gastroenterology, recent research efforts have focused on using AI in esophagogastroduodenoscopy, wireless capsule endoscopy (WCE) and colonoscopy to assist in diagnosis, disease monitoring, lesion detection and therapeutic intervention. The main objective of this narrative review is to provide a comprehensive overview of the research being performed within gastroenterology on AI in esophagogastroduodenoscopy, WCE and colonoscopy.
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Affiliation(s)
- Jonathan S Galati
- Department of Medicine, NYU Langone Health, New York, NY 10016, United States
| | - Robert J Duve
- Department of Internal Medicine, Jacobs School of Medicine and Biomedical Sciences, University at Buffalo, Buffalo, NY 14203, United States
| | - Matthew O'Mara
- Division of Gastroenterology, NYU Langone Health, New York, NY 10016, United States
| | - Seth A Gross
- Division of Gastroenterology, NYU Langone Health, New York, NY 10016, United States
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5
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Hong S, Hong S, Jang J, Kim K, Hyung WJ, Choi MK. Amplifying action-context greater: image segmentation-guided intraoperative active bleeding detection. COMPUTER METHODS IN BIOMECHANICS AND BIOMEDICAL ENGINEERING: IMAGING & VISUALIZATION 2022. [DOI: 10.1080/21681163.2022.2159533] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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Dahiya DS, Al-Haddad M, Chandan S, Gangwani MK, Aziz M, Mohan BP, Ramai D, Canakis A, Bapaye J, Sharma N. Artificial Intelligence in Endoscopic Ultrasound for Pancreatic Cancer: Where Are We Now and What Does the Future Entail? J Clin Med 2022; 11:7476. [PMID: 36556092 PMCID: PMC9786876 DOI: 10.3390/jcm11247476] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2022] [Revised: 12/14/2022] [Accepted: 12/15/2022] [Indexed: 12/23/2022] Open
Abstract
Pancreatic cancer is a highly lethal disease associated with significant morbidity and mortality. In the United States (US), the overall 5-year relative survival rate for pancreatic cancer during the 2012-2018 period was 11.5%. However, the cancer stage at diagnosis strongly influences relative survival in these patients. Per the National Cancer Institute (NCI) statistics for 2012-2018, the 5-year relative survival rate for patients with localized disease was 43.9%, while it was 3.1% for patients with distant metastasis. The poor survival rates are primarily due to the late development of clinical signs and symptoms. Hence, early diagnosis is critical in improving treatment outcomes. In recent years, artificial intelligence (AI) has gained immense popularity in gastroenterology. AI-assisted endoscopic ultrasound (EUS) models have been touted as a breakthrough in the early detection of pancreatic cancer. These models may also accurately differentiate pancreatic cancer from chronic pancreatitis and autoimmune pancreatitis, which mimics pancreatic cancer on radiological imaging. In this review, we detail the application of AI-assisted EUS models for pancreatic cancer detection. We also highlight the utility of AI-assisted EUS models in differentiating pancreatic cancer from radiological mimickers. Furthermore, we discuss the current limitations and future applications of AI technology in EUS for pancreatic cancers.
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Affiliation(s)
- Dushyant Singh Dahiya
- Department of Internal Medicine, Central Michigan University College of Medicine, Saginaw, MI 48601, USA
| | - Mohammad Al-Haddad
- Division of Gastroenterology and Hepatology, Indiana University School of Medicine, Indianapolis, IN 46202, USA
| | - Saurabh Chandan
- Division of Gastroenterology and Hepatology, CHI Creighton University Medical Center, Omaha, NE 68131, USA
| | - Manesh Kumar Gangwani
- Department of Internal Medicine, The University of Toledo Medical Center, Toledo, OH 43614, USA
| | - Muhammad Aziz
- Department of Gastroenterology, The University of Toledo Medical Center, Toledo, OH 43614, USA
| | - Babu P. Mohan
- Division of Gastroenterology and Hepatology, University of Utah School of Medicine, Salt Lake City, UT 84132, USA
| | - Daryl Ramai
- Division of Gastroenterology and Hepatology, University of Utah School of Medicine, Salt Lake City, UT 84132, USA
| | - Andrew Canakis
- Division of Gastroenterology and Hepatology, University of Maryland School of Medicine, Baltimore, MD 21201, USA
| | - Jay Bapaye
- Department of Internal Medicine, Rochester General Hospital, Rochester, NY 14621, USA
| | - Neil Sharma
- Division of Gastroenterology and Hepatology, Indiana University School of Medicine, Indianapolis, IN 46202, USA
- Parkview Cancer Institute, Fort Wayne, IN 46845, USA
- Interventional Oncology & Surgical Endoscopy Programs (IOSE), Parkview Health, Fort Wayne, IN 46845, USA
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7
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Khan ZA, Beghdadi A, Kaaniche M, Alaya-Cheikh F, Gharbi O. A neural network based framework for effective laparoscopic video quality assessment. Comput Med Imaging Graph 2022; 101:102121. [PMID: 36174307 DOI: 10.1016/j.compmedimag.2022.102121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2022] [Revised: 08/22/2022] [Accepted: 08/30/2022] [Indexed: 01/27/2023]
Abstract
Video quality assessment is a challenging problem having a critical significance in the context of medical imaging. For instance, in laparoscopic surgery, the acquired video data suffers from different kinds of distortion that not only hinder surgery performance but also affect the execution of subsequent tasks in surgical navigation and robotic surgeries. For this reason, we propose in this paper neural network-based approaches for distortion classification as well as quality prediction. More precisely, a Residual Network (ResNet) based approach is firstly developed for simultaneous ranking and classification task. Then, this architecture is extended to make it appropriate for the quality prediction task by using an additional Fully Connected Neural Network (FCNN). To train the overall architecture (ResNet and FCNN models), transfer learning and end-to-end learning approaches are investigated. Experimental results, carried out on a new laparoscopic video quality database, have shown the efficiency of the proposed methods compared to recent conventional and deep learning based approaches.
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Affiliation(s)
- Zohaib Amjad Khan
- Université Sorbonne Paris Nord, L2TI, UR 3043, F-93430, Villetaneuse, France
| | - Azeddine Beghdadi
- Université Sorbonne Paris Nord, L2TI, UR 3043, F-93430, Villetaneuse, France.
| | - Mounir Kaaniche
- Université Sorbonne Paris Nord, L2TI, UR 3043, F-93430, Villetaneuse, France
| | | | - Osama Gharbi
- Université Sorbonne Paris Nord, L2TI, UR 3043, F-93430, Villetaneuse, France
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8
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Amiri Z, Hassanpour H, Beghdadi A. Feature extraction for abnormality detection in capsule endoscopy images. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2021.103219] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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9
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Xu H, Han T, Wang H, Liu S, Hou G, Sun L, Jiang G, Yang F, Wang J, Deng K, Zhou J. OUP accepted manuscript. Eur J Cardiothorac Surg 2022; 62:6555788. [PMID: 35352106 PMCID: PMC9615432 DOI: 10.1093/ejcts/ezac154] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/15/2021] [Revised: 02/10/2022] [Accepted: 03/11/2011] [Indexed: 11/15/2022] Open
Affiliation(s)
- Hao Xu
- Department of Thoracic Surgery, Peking University People's Hospital, Beijing, China
| | - Tingxuan Han
- Center for Statistical Science & Department of Industrial Engineering, Tsinghua University, Beijing, China
| | - Haifeng Wang
- Center for Statistical Science & Department of Industrial Engineering, Tsinghua University, Beijing, China
| | - Shanggui Liu
- Department of Thoracic Surgery, Peking University People's Hospital, Beijing, China
| | - Guanghao Hou
- Department of Thoracic Surgery, Peking University People's Hospital, Beijing, China
| | - Lina Sun
- Central operating Theatre, Peking University People's Hospital, Beijing, China
| | - Guanchao Jiang
- Department of Thoracic Surgery, Peking University People's Hospital, Beijing, China
| | - Fan Yang
- Department of Thoracic Surgery, Peking University People's Hospital, Beijing, China
| | - Jun Wang
- Department of Thoracic Surgery, Peking University People's Hospital, Beijing, China
- Corresponding authors: Department of Thoracic Surgery, Peking University People's Hospital, Beijing 100044, China. Tel: +86 010-88326650; e-mail: (Dr. Jian Zhou); Department of Thoracic Surgery, Peking University People's Hospital, Beijing 100044, China. Tel: 010-88326652; e-mail: (Dr. Jun Wang); Center for Statistical Science & Department of Industrial Engineering, Tsinghua University, Beijing 100084, China. Tel: +86 010-62782453; e-mail: (Ke Deng)
| | - Ke Deng
- Center for Statistical Science & Department of Industrial Engineering, Tsinghua University, Beijing, China
- Corresponding authors: Department of Thoracic Surgery, Peking University People's Hospital, Beijing 100044, China. Tel: +86 010-88326650; e-mail: (Dr. Jian Zhou); Department of Thoracic Surgery, Peking University People's Hospital, Beijing 100044, China. Tel: 010-88326652; e-mail: (Dr. Jun Wang); Center for Statistical Science & Department of Industrial Engineering, Tsinghua University, Beijing 100084, China. Tel: +86 010-62782453; e-mail: (Ke Deng)
| | - Jian Zhou
- Department of Thoracic Surgery, Peking University People's Hospital, Beijing, China
- Corresponding authors: Department of Thoracic Surgery, Peking University People's Hospital, Beijing 100044, China. Tel: +86 010-88326650; e-mail: (Dr. Jian Zhou); Department of Thoracic Surgery, Peking University People's Hospital, Beijing 100044, China. Tel: 010-88326652; e-mail: (Dr. Jun Wang); Center for Statistical Science & Department of Industrial Engineering, Tsinghua University, Beijing 100084, China. Tel: +86 010-62782453; e-mail: (Ke Deng)
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10
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Kanakatte A, Ghose A. Precise Bleeding and Red lesions localization from Capsule Endoscopy using Compact U-Net. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2021; 2021:3089-3092. [PMID: 34891895 DOI: 10.1109/embc46164.2021.9630301] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Wireless capsule endoscopy is a non-invasive and painless procedure to detect anomalies from the gastrointestinal tract. Single examination results in up to 8 hrs of video and requires between 45 - 180 mins for diagnosis depending on the complexity. Image and video computational methods are needed to increase both efficiency and accuracy of the diagnosis. In this paper, a compact U-Net with lesser encoder-decoder pairs is presented, to detect and precisely segment bleeding and red lesions from endoscopy data. The proposed compact U-Net is compared with the original U-Net and also with other methods reported in the literature. The results show the proposed compact network performs on par with the original network but with faster training and lesser memory consumption. Also, the proposed model provided a dice score of 91% outperforming other methods reported on a blind tested WCE dataset with no images from this set used for training.
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11
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Cao JS, Lu ZY, Chen MY, Zhang B, Juengpanich S, Hu JH, Li SJ, Topatana W, Zhou XY, Feng X, Shen JL, Liu Y, Cai XJ. Artificial intelligence in gastroenterology and hepatology: Status and challenges. World J Gastroenterol 2021; 27:1664-1690. [PMID: 33967550 PMCID: PMC8072192 DOI: 10.3748/wjg.v27.i16.1664] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/15/2021] [Revised: 02/11/2021] [Accepted: 03/17/2021] [Indexed: 02/06/2023] Open
Abstract
Originally proposed by John McCarthy in 1955, artificial intelligence (AI) has achieved a breakthrough and revolutionized the processing methods of clinical medicine with the increasing workloads of medical records and digital images. Doctors are paying attention to AI technologies for various diseases in the fields of gastroenterology and hepatology. This review will illustrate AI technology procedures for medical image analysis, including data processing, model establishment, and model validation. Furthermore, we will summarize AI applications in endoscopy, radiology, and pathology, such as detecting and evaluating lesions, facilitating treatment, and predicting treatment response and prognosis with excellent model performance. The current challenges for AI in clinical application include potential inherent bias in retrospective studies that requires larger samples for validation, ethics and legal concerns, and the incomprehensibility of the output results. Therefore, doctors and researchers should cooperate to address the current challenges and carry out further investigations to develop more accurate AI tools for improved clinical applications.
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Affiliation(s)
- Jia-Sheng Cao
- Department of General Surgery, Sir Run-Run Shaw Hospital, Zhejiang University, Hangzhou 310016, Zhejiang Province, China
| | - Zi-Yi Lu
- Zhejiang University School of Medicine, Zhejiang University, Hangzhou 310058, Zhejiang Province, China
| | - Ming-Yu Chen
- Department of General Surgery, Sir Run-Run Shaw Hospital, Zhejiang University, Hangzhou 310016, Zhejiang Province, China
| | - Bin Zhang
- Department of General Surgery, Sir Run-Run Shaw Hospital, Zhejiang University, Hangzhou 310016, Zhejiang Province, China
| | - Sarun Juengpanich
- Zhejiang University School of Medicine, Zhejiang University, Hangzhou 310058, Zhejiang Province, China
| | - Jia-Hao Hu
- Department of General Surgery, Sir Run-Run Shaw Hospital, Zhejiang University, Hangzhou 310016, Zhejiang Province, China
| | - Shi-Jie Li
- Department of General Surgery, Sir Run-Run Shaw Hospital, Zhejiang University, Hangzhou 310016, Zhejiang Province, China
| | - Win Topatana
- Zhejiang University School of Medicine, Zhejiang University, Hangzhou 310058, Zhejiang Province, China
| | - Xue-Yin Zhou
- School of Medicine, Wenzhou Medical University, Wenzhou 325035, Zhejiang Province, China
| | - Xu Feng
- Department of General Surgery, Sir Run-Run Shaw Hospital, Zhejiang University, Hangzhou 310016, Zhejiang Province, China
| | - Ji-Liang Shen
- Department of General Surgery, Sir Run-Run Shaw Hospital, Zhejiang University, Hangzhou 310016, Zhejiang Province, China
| | - Yu Liu
- College of Life Sciences, Zhejiang University, Hangzhou 310058, Zhejiang Province, China
| | - Xiu-Jun Cai
- Department of General Surgery, Sir Run-Run Shaw Hospital, Zhejiang University, Hangzhou 310016, Zhejiang Province, China
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12
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Kumar R, Khan FU, Sharma A, Aziz IB, Poddar NK. Recent Applications of Artificial Intelligence in detection of Gastrointestinal, Hepatic and Pancreatic Diseases. Curr Med Chem 2021; 29:66-85. [PMID: 33820515 DOI: 10.2174/0929867328666210405114938] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2020] [Revised: 02/25/2021] [Accepted: 03/06/2021] [Indexed: 11/22/2022]
Abstract
There is substantial progress in artificial intelligence (AI) algorithms and their medical sciences applications in the last two decades. AI-assisted programs have already been established for remotely health monitoring using sensors and smartphones. A variety of AI-based prediction models available for the gastrointestinal inflammatory, non-malignant diseases, and bowel bleeding using wireless capsule endoscopy, electronic medical records for hepatitis-associated fibrosis, pancreatic carcinoma using endoscopic ultrasounds. AI-based models may be of immense help for healthcare professionals in the identification, analysis, and decision support using endoscopic images to establish prognosis and risk assessment of patient's treatment using multiple factors. Although enough randomized clinical trials are warranted to establish the efficacy of AI-algorithms assisted and non-AI based treatments before approval of such techniques from medical regulatory authorities. In this article, available AI approaches and AI-based prediction models for detecting gastrointestinal, hepatic, and pancreatic diseases are reviewed. The limitation of AI techniques in such disease prognosis, risk assessment, and decision support are discussed.
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Affiliation(s)
- Rajnish Kumar
- Amity Institute of Biotechnology, Amity University Uttar Pradesh Lucknow Campus, Uttar Pradesh. India
| | - Farhat Ullah Khan
- Computer and Information Sciences Department, Universiti Teknologi Petronas, 32610, Seri Iskander, Perak. Malaysia
| | - Anju Sharma
- Department of Applied Science, Indian Institute of Information Technology, Allahabad, Uttar Pradesh. India
| | - Izzatdin Ba Aziz
- Computer and Information Sciences Department, Universiti Teknologi Petronas, 32610, Seri Iskander, Perak. Malaysia
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13
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Caroppo A, Leone A, Siciliano P. Deep transfer learning approaches for bleeding detection in endoscopy images. Comput Med Imaging Graph 2021; 88:101852. [PMID: 33493998 DOI: 10.1016/j.compmedimag.2020.101852] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2020] [Revised: 12/17/2020] [Accepted: 12/18/2020] [Indexed: 12/17/2022]
Abstract
Wireless capsule endoscopy is a non-invasive, wireless imaging tool that has developed rapidly over the last several years. One of the main limiting factors using this technology is that it produces a huge number of images, whose analysis, to be done by a doctor, is an extremely time-consuming process. In this research area, the management of this problem has been addressed with the development of Computer-aided Diagnosis systems thanks to which the automatic inspection and analysis of images acquired by the capsule has clearly improved. Recently, a big advance in classification of endoscopic images is achieved with the emergence of deep learning methods. The proposed expert system employs three pre-trained deep convolutional neural networks for feature extraction. In order to construct efficient feature sets, the features from VGG19, InceptionV3 and ResNet50 models are then selected and fused using the minimum Redundancy Maximum Relevance method and different fusion rules. Finally, supervised machine learning algorithms are employed to classify the images using the extracted features into two categories: bleeding and nonbleeding images. For performance evaluation a series of experiments are performed on two standard benchmark datasets. It has been observed that the proposed architecture outclass the single deep learning architectures, with an average accuracy in detection bleeding regions of 97.65 % and 95.70 % on well-known state-of-the-art datasets considering three different fusion rules, with the best combination in terms of accuracy and training time obtained using mean value pooling as fusion rule and Support Vector Machine as classifier.
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Affiliation(s)
- Andrea Caroppo
- Institute for Microelectronics and Microsystems, National Research Council of Italy, Lecce 73100, Italy.
| | - Alessandro Leone
- Institute for Microelectronics and Microsystems, National Research Council of Italy, Lecce 73100, Italy.
| | - Pietro Siciliano
- Institute for Microelectronics and Microsystems, National Research Council of Italy, Lecce 73100, Italy.
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14
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Jani KK, Srivastava R. A Survey on Medical Image Analysis in Capsule Endoscopy. Curr Med Imaging 2020; 15:622-636. [PMID: 32008510 DOI: 10.2174/1573405614666181102152434] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2018] [Revised: 10/14/2018] [Accepted: 10/22/2018] [Indexed: 02/06/2023]
Abstract
BACKGROUND AND OBJECTIVE Capsule Endoscopy (CE) is a non-invasive, patient-friendly alternative to conventional endoscopy procedure. However, CE produces 6 to 8 hrs long video posing a tedious challenge to a gastroenterologist for abnormality detection. Major challenges to an expert are lengthy videos, need of constant concentration and subjectivity of the abnormality. To address these challenges along with high diagnostic accuracy, design and development of automated abnormality detection system is a must. Machine learning and computer vision techniques are devised to develop such automated systems. METHODS Study presents a review of quality research papers published in IEEE, Scopus, and Science Direct database with search criteria as capsule endoscopy, engineering, and journal papers. The initial search retrieved 144 publications. After evaluating all articles, 62 publications pertaining to image analysis are selected. RESULTS This paper presents a rigorous review comprising all the aspects of medical image analysis concerning capsule endoscopy namely video summarization and redundant image elimination, Image enhancement and interpretation, segmentation and region identification, Computer-aided abnormality detection in capsule endoscopy, Image and video compression. The study provides a comparative analysis of various approaches, experimental setup, performance, strengths, and limitations of the aspects stated above. CONCLUSIONS The analyzed image analysis techniques for capsule endoscopy have not yet overcome all current challenges mainly due to lack of dataset and complex nature of the gastrointestinal tract.
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Affiliation(s)
- Kuntesh Ketan Jani
- Computer Science and Engineering Department, Indian Institute of Technology (Banaras Hindu University) Varanasi, Varanasi, Uttar Pradesh, India
| | - Rajeev Srivastava
- Computer Science and Engineering Department, Indian Institute of Technology (Banaras Hindu University) Varanasi, Varanasi, Uttar Pradesh, India
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15
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Laiz P, Vitrià J, Wenzek H, Malagelada C, Azpiroz F, Seguí S. WCE polyp detection with triplet based embeddings. Comput Med Imaging Graph 2020; 86:101794. [PMID: 33130417 DOI: 10.1016/j.compmedimag.2020.101794] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2020] [Revised: 09/17/2020] [Accepted: 09/18/2020] [Indexed: 12/20/2022]
Abstract
Wireless capsule endoscopy is a medical procedure used to visualize the entire gastrointestinal tract and to diagnose intestinal conditions, such as polyps or bleeding. Current analyses are performed by manually inspecting nearly each one of the frames of the video, a tedious and error-prone task. Automatic image analysis methods can be used to reduce the time needed for physicians to evaluate a capsule endoscopy video. However these methods are still in a research phase. In this paper we focus on computer-aided polyp detection in capsule endoscopy images. This is a challenging problem because of the diversity of polyp appearance, the imbalanced dataset structure and the scarcity of data. We have developed a new polyp computer-aided decision system that combines a deep convolutional neural network and metric learning. The key point of the method is the use of the Triplet Loss function with the aim of improving feature extraction from the images when having small dataset. The Triplet Loss function allows to train robust detectors by forcing images from the same category to be represented by similar embedding vectors while ensuring that images from different categories are represented by dissimilar vectors. Empirical results show a meaningful increase of AUC values compared to state-of-the-art methods. A good performance is not the only requirement when considering the adoption of this technology to clinical practice. Trust and explainability of decisions are as important as performance. With this purpose, we also provide a method to generate visual explanations of the outcome of our polyp detector. These explanations can be used to build a physician's trust in the system and also to convey information about the inner working of the method to the designer for debugging purposes.
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Affiliation(s)
- Pablo Laiz
- Department of Mathematics and Computer Science, Universitat de Barcelona, Barcelona, Spain.
| | - Jordi Vitrià
- Department of Mathematics and Computer Science, Universitat de Barcelona, Barcelona, Spain
| | | | - Carolina Malagelada
- Digestive System Research Unit, University Hospital Vall d'Hebron, Barcelona, Spain
| | - Fernando Azpiroz
- Digestive System Research Unit, University Hospital Vall d'Hebron, Barcelona, Spain
| | - Santi Seguí
- Department of Mathematics and Computer Science, Universitat de Barcelona, Barcelona, Spain
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16
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Rahim T, Usman MA, Shin SY. A survey on contemporary computer-aided tumor, polyp, and ulcer detection methods in wireless capsule endoscopy imaging. Comput Med Imaging Graph 2020; 85:101767. [DOI: 10.1016/j.compmedimag.2020.101767] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2019] [Revised: 07/13/2020] [Accepted: 07/18/2020] [Indexed: 12/12/2022]
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17
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Mujtaba S, Chawla S, Massaad JF. Diagnosis and Management of Non-Variceal Gastrointestinal Hemorrhage: A Review of Current Guidelines and Future Perspectives. J Clin Med 2020; 9:402. [PMID: 32024301 PMCID: PMC7074258 DOI: 10.3390/jcm9020402] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2019] [Revised: 01/21/2020] [Accepted: 01/24/2020] [Indexed: 01/30/2023] Open
Abstract
Non-variceal gastrointestinal bleeding (GIB) is a significant cause of mortality and morbidity worldwide which is encountered in the ambulatory and hospital settings. Hemorrhage form the gastrointestinal (GI) tract is categorized as upper GIB, small bowel bleeding (also formerly referred to as obscure GIB) or lower GIB. Although the etiologies of GIB are variable, a strong, consistent risk factor is use of non-steroidal anti-inflammatory drugs. Advances in the endoscopic diagnosis and treatment of GIB have led to improved outcomes. We present an updated review of the current practices regarding the diagnosis and management of non-variceal GIB, and possible future directions.
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Affiliation(s)
| | | | - Julia Fayez Massaad
- Division of Digestive Diseases, Emory University, 1365 Clifton Road, Northeast, Building B, Suite 1200, Atlanta, GA 30322, USA; (S.M.); (S.C.)
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18
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Le Berre C, Sandborn WJ, Aridhi S, Devignes MD, Fournier L, Smaïl-Tabbone M, Danese S, Peyrin-Biroulet L. Application of Artificial Intelligence to Gastroenterology and Hepatology. Gastroenterology 2020; 158:76-94.e2. [PMID: 31593701 DOI: 10.1053/j.gastro.2019.08.058] [Citation(s) in RCA: 321] [Impact Index Per Article: 64.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/20/2018] [Revised: 08/22/2019] [Accepted: 08/24/2019] [Indexed: 02/07/2023]
Abstract
Since 2010, substantial progress has been made in artificial intelligence (AI) and its application to medicine. AI is explored in gastroenterology for endoscopic analysis of lesions, in detection of cancer, and to facilitate the analysis of inflammatory lesions or gastrointestinal bleeding during wireless capsule endoscopy. AI is also tested to assess liver fibrosis and to differentiate patients with pancreatic cancer from those with pancreatitis. AI might also be used to establish prognoses of patients or predict their response to treatments, based on multiple factors. We review the ways in which AI may help physicians make a diagnosis or establish a prognosis and discuss its limitations, knowing that further randomized controlled studies will be required before the approval of AI techniques by the health authorities.
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Affiliation(s)
- Catherine Le Berre
- Institut des Maladies de l'Appareil Digestif, Nantes University Hospital, France; Institut National de la Santé et de la Recherche Médicale U954 and Department of Gastroenterology, Nancy University Hospital, University of Lorraine, France
| | | | - Sabeur Aridhi
- University of Lorraine, Le Centre National de la Recherche Scientifique, Inria, Laboratoire Lorrain de Recherche en Informatique et ses Applications, Nancy, France
| | - Marie-Dominique Devignes
- University of Lorraine, Le Centre National de la Recherche Scientifique, Inria, Laboratoire Lorrain de Recherche en Informatique et ses Applications, Nancy, France
| | - Laure Fournier
- Université Paris-Descartes, Institut National de la Santé et de la Recherche Médicale, Unité Mixte De Recherché S970, Assistance Publique-Hôpitaux de Paris, Paris, France
| | - Malika Smaïl-Tabbone
- University of Lorraine, Le Centre National de la Recherche Scientifique, Inria, Laboratoire Lorrain de Recherche en Informatique et ses Applications, Nancy, France
| | - Silvio Danese
- Inflammatory Bowel Disease Center and Department of Biomedical Sciences, Humanitas Clinical and Research Center, Humanitas University, Milan, Italy
| | - Laurent Peyrin-Biroulet
- Institut National de la Santé et de la Recherche Médicale U954 and Department of Gastroenterology, Nancy University Hospital, University of Lorraine, France.
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19
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The future of capsule endoscopy in clinical practice: from diagnostic to therapeutic experimental prototype capsules. GASTROENTEROLOGY REVIEW 2019; 15:179-193. [PMID: 33005262 PMCID: PMC7509905 DOI: 10.5114/pg.2019.87528] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/11/2019] [Accepted: 06/17/2019] [Indexed: 02/08/2023]
Abstract
Capsule endoscopy (CE) is indicated as a first-line clinical examination for the detection of small-bowel pathology, and there is an ever-growing drive for it to become a method for the screening of the entire gastrointestinal tract (GI). Although CE's main function is diagnosis, the research for therapeutic capabilities has intensified to make therapeutic capsule endoscopy (TCE) a target within reach. This manuscript presents the research evolution of CE and TCE through the last 5 years and describes notable problems, as well as clinical and technological challenges to overcome. This review also reports the state-of-the-art of capsule devices with a focus on CE research prototypes promising an enhanced diagnostic yield (DY) and treatment. Lastly, this article provides an overview of the research progress made in software for enhancing DY by increasing the accuracy of abnormality detection and lesion localisation.
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20
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Usman MA, Martini MG. On the suitability of VMAF for quality assessment of medical videos: Medical ultrasound & wireless capsule endoscopy. Comput Biol Med 2019; 113:103383. [PMID: 31437625 DOI: 10.1016/j.compbiomed.2019.103383] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2019] [Revised: 07/22/2019] [Accepted: 08/04/2019] [Indexed: 01/16/2023]
Abstract
With the rapid evolution in modern multimedia networks and systems, services such as telemedicine and tele-surgery are becoming more popular. Quality estimation and monitoring of medical videos is becoming important not only in the field of research, but also in real-time applications and services. The state-of-the-art video quality metric (VQM) called Video Multimethod Assessment Fusion (VMAF) is a promising solution for quality estimation of videos impaired by compression and scaling artifacts. The metric was developed by Netflix for entertainment video content and its good performance does not necessarily extend to medical videos. This paper focuses on evaluating the performance of VMAF in the context of quality assessment (QA) for medical videos. We consider in this paper medical videos compressed via High Efficiency Video Coding (HEVC) and refer in particular to medical ultrasound videos and wireless capsule endoscopy (WCE) videos for the performance estimation of VMAF. The correlation between the subjective scores of these two datasets and VMAF's quality estimates is studied and presented. The results show that VMAF outperforms other state-of-the-art VQMs in the context of WCE videos, but this is not the case for medical ultrasound videos.
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Affiliation(s)
- Muhammad Arslan Usman
- Wireless Multimedia and Networking (WMN) Research Group, Faculty of Science, Engineering and Computing, Kingston University, KT1 2EE, London, United Kingdom.
| | - Maria G Martini
- Wireless Multimedia and Networking (WMN) Research Group, Faculty of Science, Engineering and Computing, Kingston University, KT1 2EE, London, United Kingdom.
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21
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Vasilakakis M, Koulaouzidis A, Yung DE, Plevris JN, Toth E, Iakovidis DK. Follow-up on: optimizing lesion detection in small bowel capsule endoscopy and beyond: from present problems to future solutions. Expert Rev Gastroenterol Hepatol 2019; 13:129-141. [PMID: 30791780 DOI: 10.1080/17474124.2019.1553616] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/17/2018] [Accepted: 11/26/2018] [Indexed: 12/16/2022]
Abstract
This review presents noteworthy advances in clinical and experimental Capsule Endoscopy (CE), focusing on the progress that has been reported over the last 5 years since our previous review on the subject. Areas covered: This study presents the commercially available CE platforms, as well as the advances made in optimizing the diagnostic capabilities of CE. The latter includes recent concept and prototype capsule endoscopes, medical approaches to improve diagnostic yield, and progress in software for enhancing visualization, abnormality detection, and lesion localization. Expert commentary: Currently, moving through the second decade of CE evolution, there are still several open issues and remarkable challenges to overcome.
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Affiliation(s)
- Michael Vasilakakis
- a Department of Computer Science and Biomedical Informatics , University of Thessaly , Lamia , Greece
| | - Anastasios Koulaouzidis
- b Endoscopy Unit , The Royal Infirmary of Edinburgh , Edinburgh , Scotland
- c Department of Clinical Sciences , Lund University , Malmö , Sweden
| | - Diana E Yung
- b Endoscopy Unit , The Royal Infirmary of Edinburgh , Edinburgh , Scotland
| | - John N Plevris
- b Endoscopy Unit , The Royal Infirmary of Edinburgh , Edinburgh , Scotland
| | - Ervin Toth
- c Department of Clinical Sciences , Lund University , Malmö , Sweden
- d Section of Gastroenterology, Department of Clinical Sciences , Skåne University Hospital Malmö , Malmö , Sweden
| | - Dimitris K Iakovidis
- a Department of Computer Science and Biomedical Informatics , University of Thessaly , Lamia , Greece
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22
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Usman MA, Usman MR, Shin SY. Quality assessment for wireless capsule endoscopy videos compressed via HEVC: From diagnostic quality to visual perception. Comput Biol Med 2017; 91:112-134. [DOI: 10.1016/j.compbiomed.2017.10.007] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2017] [Revised: 10/07/2017] [Accepted: 10/08/2017] [Indexed: 01/16/2023]
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23
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Noya F, Alvarez-Gonzalez MA, Benitez R. Automated angiodysplasia detection from wireless capsule endoscopy. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2017; 2017:3158-3161. [PMID: 29060568 DOI: 10.1109/embc.2017.8037527] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
We present a novel system for the automatic detection of angiodysplasia lesions from capsule endoscopy images. The approach identifies potential regions of interest and classifies them using a combination of color-based, texture, statistical and morphological features. A boosted decision tree classification method is used in order to overcome the problem of unbalanced sampling between pathological and non-pathological regions. The lesion detection method has been designed and validated using a lesion database labelled by an expert. The approach achieves a sensitivity of 89.51% and a specificity of 96.8%, thus providing a high performance in the detection of angiodysplasia lesions.
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