BPG is committed to discovery and dissemination of knowledge
Cited by in CrossRef
For: Paul D, Bartenschlager R. Architecture and biogenesis of plus-strand RNA virus replication factories. World J Virol 2013; 2(2): 32-48 [PMID: 24175228 DOI: 10.5501/wjv.v2.i2.32]
URL: https://www.wjgnet.com/2220-3249/full/v2/i2/32.htm
Number Citing Articles
1
Dahai Luo, Subhash G. Vasudevan, Julien Lescar. The flavivirus NS2B–NS3 protease–helicase as a target for antiviral drug developmentAntiviral Research 2015; 118: 148 doi: 10.1016/j.antiviral.2015.03.014
2
Kenneth J Ertel, Desirée Benefield, Daniel Castaño-Diez, Janice G Pennington, Mark Horswill, Johan A den Boon, Marisa S Otegui, Paul Ahlquist. Cryo-electron tomography reveals novel features of a viral RNA replication compartmenteLife 2017; 6 doi: 10.7554/eLife.25940
3
Masashi Arakawa, Eiji Morita. Flavivirus Replication Organelle Biogenesis in the Endoplasmic Reticulum: Comparison with Other Single-Stranded Positive-Sense RNA VirusesInternational Journal of Molecular Sciences 2019; 20(9): 2336 doi: 10.3390/ijms20092336
4
Pietro Scaturro, Mirko Cortese, Laurent Chatel-Chaix, Wolfgang Fischl, Ralf Bartenschlager, Ted C. Pierson. Dengue Virus Non-structural Protein 1 Modulates Infectious Particle Production via Interaction with the Structural ProteinsPLOS Pathogens 2015; 11(11): e1005277 doi: 10.1371/journal.ppat.1005277
5
Margot Carocci, Jens H. Kuhn, Priscilla L. Yang. Global Virology I - Identifying and Investigating Viral Diseases2015; : 403 doi: 10.1007/978-1-4939-2410-3_15
6
Ana-Belén Blázquez, Estela Escribano-Romero, Teresa Merino-Ramos, Juan-Carlos Saiz, Miguel A. Martín-Acebes. Stress responses in flavivirus-infected cells: activation of unfolded protein response and autophagyFrontiers in Microbiology 2014; 5 doi: 10.3389/fmicb.2014.00266
7
Christian Harak, Volker Lohmann. Ultrastructure of the replication sites of positive-strand RNA virusesVirology 2015; : 418 doi: 10.1016/j.virol.2015.02.029
8
William Bakhache, Aymeric Neyret, Eric Bernard, Andres Merits, Laurence Briant, Rebecca Ellis Dutch. Palmitoylated Cysteines in Chikungunya Virus nsP1 Are Critical for Targeting to Cholesterol-Rich Plasma Membrane Microdomains with Functional Consequences for Viral Genome ReplicationJournal of Virology 2020; 94(10) doi: 10.1128/JVI.02183-19
9
Xiuling Cao, Xuejiao Jin, Xiaofeng Zhang, Ying Li, Chunyan Wang, Xianbing Wang, Jian Hong, Xiaofeng Wang, Dawei Li, Yongliang Zhang, A. E. Simon. Morphogenesis of Endoplasmic Reticulum Membrane-Invaginated Vesicles during Beet Black Scorch Virus Infection: Role of Auxiliary Replication Protein and New Implications of Three-Dimensional ArchitectureJournal of Virology 2015; 89(12): 6184 doi: 10.1128/JVI.00401-15
10
Chunhong Yin, Niluka Goonawardane, Hazel Stewart, Mark Harris, Glenn Randall. A role for domain I of the hepatitis C virus NS5A protein in virus assemblyPLOS Pathogens 2018; 14(1): e1006834 doi: 10.1371/journal.ppat.1006834
11
Hongyun Lu, Yumeng Zhan, Xiaorong Li, Xuehui Bai, Feifei Yuan, Lulu Ma, Xue Wang, Mengjia Xie, Wei Wu, Zhongzhou Chen. Novel insights into the function of an N-terminal region of DENV2 NS4B for the optimal helicase activity of NS3Virus Research 2021; 295: 198318 doi: 10.1016/j.virusres.2021.198318
12
Laura R. Delgui, María I. Colombo. A Novel Mechanism Underlying the Innate Immune Response Induction upon Viral-Dependent Replication of Host Cell mRNA: A Mistake of +sRNA Viruses' ReplicasesFrontiers in Cellular and Infection Microbiology 2017; 7 doi: 10.3389/fcimb.2017.00005
13
C Cheng Kao, Olve B Peersen. Editorial overview: Virus replication in animals and plantsCurrent Opinion in Virology 2014; 9: iv doi: 10.1016/j.coviro.2014.10.002
14
Cristina M. Dorobantu, Lucian Albulescu, Christian Harak, Qian Feng, Mirjam van Kampen, Jeroen R. P. M. Strating, Alexander E. Gorbalenya, Volker Lohmann, Hilde M. van der Schaar, Frank J. M. van Kuppeveld, Bert L. Semler. Modulation of the Host Lipid Landscape to Promote RNA Virus Replication: The Picornavirus Encephalomyocarditis Virus Converges on the Pathway Used by Hepatitis C VirusPLOS Pathogens 2015; 11(9): e1005185 doi: 10.1371/journal.ppat.1005185
15
Kazuhiro Ishibashi, Masayasu Saruta, Takehiko Shimizu, Miao Shu, Toyoaki Anai, Kunihiko Komatsu, Naohiro Yamada, Yuichi Katayose, Masayuki Ishikawa, Masao Ishimoto, Akito Kaga. Soybean antiviral immunity conferred by dsRNase targets the viral replication complexNature Communications 2019; 10(1) doi: 10.1038/s41467-019-12052-5
16
Maija K. Pietilä, Martijn J. van Hemert, Tero Ahola, Anne E. Simon. Purification of Highly Active Alphavirus Replication Complexes Demonstrates Altered Fractionation of Multiple Cellular MembranesJournal of Virology 2018; 92(8) doi: 10.1128/JVI.01852-17
17
Michael Niepmann, Lyudmila A. Shalamova, Gesche K. Gerresheim, Oliver Rossbach. Signals Involved in Regulation of Hepatitis C Virus RNA Genome Translation and ReplicationFrontiers in Microbiology 2018; 9 doi: 10.3389/fmicb.2018.00395
18
Eszter Balogh, Csilla Juhász, Tamás Dankó, József Fodor, István Tóbiás, Gábor Gullner. The expression of several pepper fatty acid desaturase genes is robustly activated in an incompatible pepper-tobamovirus interaction, but only weakly in a compatible interactionPlant Physiology and Biochemistry 2020; 148: 347 doi: 10.1016/j.plaphy.2020.01.023
19
Inés Romero-Brey, Ralf Bartenschlager. Membranous Replication Factories Induced by Plus-Strand RNA VirusesViruses 2014; 6(7): 2826 doi: 10.3390/v6072826
20
Maija K. Pietilä, Irina C. Albulescu, Martijn J. van Hemert, Tero Ahola. Polyprotein Processing as a Determinant for in Vitro Activity of Semliki Forest Virus ReplicaseViruses 2017; 9(10): 292 doi: 10.3390/v9100292
21
Andres Lõhmus, Markku Varjosalo, Kristiina Mäkinen. Protein composition of 6K2‐induced membrane structures formed during Potato virus A infectionMolecular Plant Pathology 2016; 17(6): 943 doi: 10.1111/mpp.12341
22
Ryan Schuchman, Andy Kilianski, Amanda Piper, Ricardo Vancini, José M. C. Ribeiro, Thomas R. Sprague, Farooq Nasar, Gabrielle Boyd, Raquel Hernandez, Trevor Glaros, Rebecca Ellis Dutch. Comparative Characterization of the Sindbis Virus Proteome from Mammalian and Invertebrate Hosts Identifies nsP2 as a Component of the Virion and Sorting Nexin 5 as a Significant Host Factor for Alphavirus ReplicationJournal of Virology 2018; 92(14) doi: 10.1128/JVI.00694-18
23
Roberto Rossotti, Massimo Puoti. Sexually Transmitted Infections2020; : 255 doi: 10.1007/978-3-030-02200-6_13
24
Yu Zhang, Qianda Cao, Mingshu Wang, Renyong Jia, Shun Chen, Dekang Zhu, Mafeng Liu, Kunfeng Sun, Qiao Yang, Ying Wu, Xinxin Zhao, Xiaoyue Chen, Anchun Cheng. The 3D protein of duck hepatitis A virus type 1 binds to a viral genomic 3′ UTR and shows RNA-dependent RNA polymerase activityVirus Genes 2017; 53(6): 831 doi: 10.1007/s11262-017-1476-5
25
Samuel Tong Jia Ming, Katrina Tan Yi Jun, Guillaume Carissimo. Pathogenicity and virulence of O’nyong-nyong virus: A less studied Togaviridae with pandemic potential Virulence 2024; 15(1) doi: 10.1080/21505594.2024.2355201
26
Li Yu, Kazuyo Takeda, Yamei Gao. Characterization of virus-specific vesicles assembled by West Nile virus non-structural proteinsVirology 2017; 506: 130 doi: 10.1016/j.virol.2017.03.016
27
Jacob Beal, Tyler E. Wagner, Tasuku Kitada, Odisse Azizgolshani, Jordan Moberg Parker, Douglas Densmore, Ron Weiss. Model-Driven Engineering of Gene Expression from RNA RepliconsACS Synthetic Biology 2015; 4(1): 48 doi: 10.1021/sb500173f
28
Jianhui Li, Shai Fuchs, Jiantao Zhang, Sebastian Wellford, Maya Schuldiner, Xiaofeng Wang. An unrecognized function for COPII components in recruiting the viral replication protein BMV 1a to the perinuclear ERJournal of Cell Science 2016; 129(19): 3597 doi: 10.1242/jcs.190082
29
Tanner M. Tessier, Mackenzie J. Dodge, Martin A. Prusinkiewicz, Joe S. Mymryk. Viral Appropriation: Laying Claim to Host Nuclear Transport MachineryCells 2019; 8(6): 559 doi: 10.3390/cells8060559
30
Kevin Maringer, Ana Fernandez-Sesma. Message in a bottle: lessons learned from antagonism of STING signalling during RNA virus infectionCytokine & Growth Factor Reviews 2014; 25(6): 669 doi: 10.1016/j.cytogfr.2014.08.004
31
Syam Mohan, Manal Mohamed Elhassan Taha, Hafiz A. Makeen, Hassan A. Alhazmi, Mohammed Al Bratty, Shahnaz Sultana, Waquar Ahsan, Asim Najmi, Asaad Khalid. Bioactive Natural Antivirals: An Updated Review of the Available Plants and Isolated MoleculesMolecules 2020; 25(21): 4878 doi: 10.3390/molecules25214878
32
Pavel Montes de Oca-B. Evidence of mitochondria origin of SARS-CoV-2 double-membrane vesicles: a review.F1000Research 2024; 10: 1009 doi: 10.12688/f1000research.73170.3
33
C. Schmitt-Keichinger, C. Hemmer, F. Berthold, C. Ritzenthaler. Grapevine Viruses: Molecular Biology, Diagnostics and Management2017; : 83 doi: 10.1007/978-3-319-57706-7_4
34
Inés Romero-Brey, Carola Berger, Stephanie Kallis, Androniki Kolovou, David Paul, Volker Lohmann, Ralf Bartenschlager, Michael J. Buchmeier. NS5A Domain 1 and Polyprotein Cleavage Kinetics Are Critical for Induction of Double-Membrane Vesicles Associated with Hepatitis C Virus ReplicationmBio 2015; 6(4) doi: 10.1128/mBio.00759-15
35
Kuohan Li, Wint Wint Phoo, Dahai Luo. Functional interplay among the flavivirus NS3 protease, helicase, and cofactorsVirologica Sinica 2014; 29(2): 74 doi: 10.1007/s12250-014-3438-6
36
Tero Ahola, Vincent R. Racaniello. New Phylogenetic Grouping of Positive-Sense RNA Viruses Is Concordant with Replication Complex MorphologymBio 2019; 10(4) doi: 10.1128/mBio.01402-19
37
Ho Him Wong, Sumana Sanyal. Manipulation of autophagy by (+) RNA virusesSeminars in Cell & Developmental Biology 2020; 101: 3 doi: 10.1016/j.semcdb.2019.07.013
38
Thomas Walsh. Primer on the Pathogenesis of Severe COVID-19: Part OneEuropean Medical Journal 2020;  doi: 10.33590/emj/20-00158
39
Zhang Chengcheng, Zhao Fuxi, Guo Mengjiao, Ruan Baoyang, Wang Xuefeng, Wu Yantao, Zhang Xiaorong. CSFV protein NS5A activates the unfolded protein response to promote viral replicationVirology 2020; 541: 75 doi: 10.1016/j.virol.2019.12.006
40
Kentaro Hanada. Metabolic channeling of lipids via the contact zones between different organellesBioEssays 2024; 46(8) doi: 10.1002/bies.202400045
41
Lingbao Kong, Haruyo Aoyagi, Zibing Yang, Tao Ouyang, Mami Matsuda, Akira Fujimoto, Koichi Watashi, Ryosuke Suzuki, Minetaro Arita, Satoshi Yamagoe, Naoshi Dohmae, Takehiro Suzuki, Tetsuro Suzuki, Masamichi Muramatsu, Takaji Wakita, Hideki Aizaki, J.-H. James Ou. Surfeit 4 Contributes to the Replication of Hepatitis C Virus Using Double-Membrane VesiclesJournal of Virology 2020; 94(2) doi: 10.1128/JVI.00858-19
42
Christine E. Peters, Jan E. Carette. Return of the Neurotropic Enteroviruses: Co-Opting Cellular Pathways for InfectionViruses 2021; 13(2): 166 doi: 10.3390/v13020166
43
Xueting Wang, Juncai Ma, Xuejiao Jin, Ning Yue, Peng Gao, Keith Ka Ki Mai, Xian‐Bing Wang, Dawei Li, Byung‐Ho Kang, Yongliang Zhang. Three‐dimensional reconstruction and comparison of vacuolar membranes in response to viral infectionJournal of Integrative Plant Biology 2021; 63(2): 353 doi: 10.1111/jipb.13027
44
Heyrhyoung Lyoo, Hilde M. van der Schaar, Cristina M. Dorobantu, Huib H. Rabouw, Jeroen R. P. M. Strating, Frank J. M. van Kuppeveld, Vincent R. Racaniello. ACBD3 Is an Essential Pan-enterovirus Host Factor That Mediates the Interaction between Viral 3A Protein and Cellular Protein PI4KBmBio 2019; 10(1) doi: 10.1128/mBio.02742-18
45
Isabel Fernández-de-Castro, Cristina Risco. Imaging RNA Virus Replication Assemblies: Bunyaviruses and ReovirusesFuture Virology 2014; 9(12): 1089 doi: 10.2217/fvl.14.95
46
Paloma Hidalgo, Lourdes Anzures, Armando Hernández-Mendoza, Adán Guerrero, Christopher D. Wood, Margarita Valdés, Thomas Dobner, Ramón A. Gonzalez, R. M. Sandri-Goldin. Morphological, Biochemical, and Functional Study of Viral Replication Compartments Isolated from Adenovirus-Infected CellsJournal of Virology 2016; 90(7): 3411 doi: 10.1128/JVI.00033-16
47
Claude Pasquier, Alain Robichon. Computational search of hybrid human/SARS-CoV-2 dsRNA reveals unique viral sequences that diverge from those of other coronavirus strainsHeliyon 2021; 7(6): e07284 doi: 10.1016/j.heliyon.2021.e07284
48
Xuejiao Jin, Xiuling Cao, Xueting Wang, Jun Jiang, Juan Wan, Jean-François Laliberté, Yongliang Zhang. Three-Dimensional Architecture and Biogenesis of Membrane Structures Associated with Plant Virus ReplicationFrontiers in Plant Science 2018; 9 doi: 10.3389/fpls.2018.00057
49
Hyewon Byun, Yongqiang Gou, Adam Zook, Mary M. Lozano, Jaquelin P. Dudley. ERAD and how viruses exploit itFrontiers in Microbiology 2014; 5 doi: 10.3389/fmicb.2014.00330
50
Partha Chattopadhyay, Janani Srinivasa Vasudevan, Rajesh Pandey. Noncoding RNAs: modulators and modulatable players during infection-induced stress responseBriefings in Functional Genomics 2021; 20(1): 28 doi: 10.1093/bfgp/elaa026
51
Keisuke Tabata, Christopher J. Neufeldt, Ralf Bartenschlager. Hepatitis C Virus ReplicationCold Spring Harbor Perspectives in Medicine 2020; 10(3): a037093 doi: 10.1101/cshperspect.a037093
52
Maximilian Wei-Lin Popp, Hana Cho, Lynne E. Maquat. Viral subversion of nonsense-mediated mRNA decayRNA 2020; 26(11): 1509 doi: 10.1261/rna.076687.120
53
Sergey Y. Morozov, Andrey G. Solovyev. Small hydrophobic viral proteins involved in intercellular movement of diverse plant virus genomesAIMS Microbiology 2020; 6(3): 305 doi: 10.3934/microbiol.2020019
54
Zhenlu Zhang, Guijuan He, Gil-Soo Han, Jiantao Zhang, Nicholas Catanzaro, Arturo Diaz, Zujian Wu, George M. Carman, Lianhui Xie, Xiaofeng Wang, Aiming Wang. Host Pah1p phosphatidate phosphatase limits viral replication by regulating phospholipid synthesisPLOS Pathogens 2018; 14(4): e1006988 doi: 10.1371/journal.ppat.1006988
55
Mirko Cortese, Ji-Young Lee, Berati Cerikan, Christopher J. Neufeldt, Viola M.J. Oorschot, Sebastian Köhrer, Julian Hennies, Nicole L. Schieber, Paolo Ronchi, Giulia Mizzon, Inés Romero-Brey, Rachel Santarella-Mellwig, Martin Schorb, Mandy Boermel, Karel Mocaer, Marianne S. Beckwith, Rachel M. Templin, Viktoriia Gross, Constantin Pape, Christian Tischer, Jamie Frankish, Natalie K. Horvat, Vibor Laketa, Megan Stanifer, Steeve Boulant, Alessia Ruggieri, Laurent Chatel-Chaix, Yannick Schwab, Ralf Bartenschlager. Integrative Imaging Reveals SARS-CoV-2-Induced Reshaping of Subcellular MorphologiesCell Host & Microbe 2020; 28(6): 853 doi: 10.1016/j.chom.2020.11.003
56
Christopher J. Neufeldt, Michael A. Joyce, Nicholas Van Buuren, Aviad Levin, Karla Kirkegaard, Michael Gale Jr., D. Lorne J. Tyrrell, Richard W. Wozniak, Richard J. Kuhn. The Hepatitis C Virus-Induced Membranous Web and Associated Nuclear Transport Machinery Limit Access of Pattern Recognition Receptors to Viral Replication SitesPLOS Pathogens 2016; 12(2): e1005428 doi: 10.1371/journal.ppat.1005428
57
Weiwei Li, Yanming Zhang, C. Cheng Kao. The classic swine fever virus (CSFV) core protein can enhance de novo-initiated RNA synthesis by the CSFV polymerase NS5BVirus Genes 2014; 49(1): 106 doi: 10.1007/s11262-014-1080-x
58
Paloma Hidalgo, Ramón A. González. Molecular Medical Microbiology2024; : 2115 doi: 10.1016/B978-0-12-818619-0.00080-0
59
Yifan Xing, Qian Zhang, Yaming Jiu. Virus Infected CellsSubcellular Biochemistry 2023; 106: 333 doi: 10.1007/978-3-031-40086-5_12
60
Jing Zou, Le Tian Lee, Qing Yin Wang, Xuping Xie, Siyan Lu, Yin Hoe Yau, Zhiming Yuan, Susana Geifman Shochat, Congbao Kang, Julien Lescar, Pei-Yong Shi, T. S. Dermody. Mapping the Interactions between the NS4B and NS3 Proteins of Dengue VirusJournal of Virology 2015; 89(7): 3471 doi: 10.1128/JVI.03454-14
61
Keerthi Gottipati, Michael Woodson, Kyung H. Choi. Membrane binding and rearrangement by chikungunya virus capping enzyme nsP1Virology 2020; 544: 31 doi: 10.1016/j.virol.2020.02.006
62
Carolin Zitzmann, Lars Kaderali, Alan S. Perelson, Kathryn Miller-Jensen. Mathematical modeling of hepatitis C RNA replication, exosome secretion and virus releasePLOS Computational Biology 2020; 16(11): e1008421 doi: 10.1371/journal.pcbi.1008421
63
Peter D. Nagy, Jeroen R. P. M. Strating, Frank J. M. van Kuppeveld, Richard C. Condit. Building Viral Replication Organelles: Close Encounters of the Membrane TypesPLOS Pathogens 2016; 12(10): e1005912 doi: 10.1371/journal.ppat.1005912
64
Kazuhiro Ishibashi, Masayuki Ishikawa. Mechanisms of tomato mosaic virus RNA replication and its inhibition by the host resistance factor Tm-1Current Opinion in Virology 2014; 9: 8 doi: 10.1016/j.coviro.2014.08.005
65
Hongliang Wang, Andrew Tai. Mechanisms of Cellular Membrane Reorganization to Support Hepatitis C Virus ReplicationViruses 2016; 8(5): 142 doi: 10.3390/v8050142
66
Carolin Zitzmann, Christopher Dächert, Bianca Schmid, Hilde van der Schaar, Martijn van Hemert, Alan S. Perelson, Frank J. M. van Kuppeveld, Ralf Bartenschlager, Marco Binder, Lars Kaderali, Peter M. Kasson. Mathematical modeling of plus-strand RNA virus replication to identify broad-spectrum antiviral treatment strategiesPLOS Computational Biology 2023; 19(4): e1010423 doi: 10.1371/journal.pcbi.1010423
67
Andrew M. Skidmore, Steven B. Bradfute. The life cycle of the alphaviruses: From an antiviral perspectiveAntiviral Research 2023; 209: 105476 doi: 10.1016/j.antiviral.2022.105476
68
David Paul, Ralf Bartenschlager. A sensor at the lipid‐protein interface: Lipid peroxidation controls hepatitis C virus replicationHepatology 2015; 61(3): 1083 doi: 10.1002/hep.27637
69
Kirsi Hellström, Katri Kallio, Age Utt, Tania Quirin, Eija Jokitalo, Andres Merits, Tero Ahola, Anne E. Simon. Partially Uncleaved Alphavirus Replicase Forms Spherule Structures in the Presence and Absence of RNA TemplateJournal of Virology 2017; 91(18) doi: 10.1128/JVI.00787-17
70
Hanne Merethe Haatveit, Ingvild B. Nyman, Turhan Markussen, Øystein Wessel, Maria Krudtaa Dahle, Espen Rimstad. The non-structural protein μNS of piscine orthoreovirus (PRV) forms viral factory-like structuresVeterinary Research 2016; 47(1) doi: 10.1186/s13567-015-0302-0
71
Yaw Bia Tan, David Chmielewski, Michelle Cheok Yien Law, Kuo Zhang, Yu He, Muyuan Chen, Jing Jin, Dahai Luo. Molecular architecture of the Chikungunya virus replication complexScience Advances 2022; 8(48) doi: 10.1126/sciadv.add2536
72
Sonam Bhatia, Naveen Narayanan, Shilpi Nagpal, Deepak T. Nair. Antiviral therapeutics directed against RNA dependent RNA polymerases from positive-sense virusesMolecular Aspects of Medicine 2021; 81: 101005 doi: 10.1016/j.mam.2021.101005
73
Katri Kallio, Kirsi Hellström, Eija Jokitalo, Tero Ahola, A. Simon. RNA Replication and Membrane Modification Require the Same Functions of Alphavirus Nonstructural ProteinsJournal of Virology 2016; 90(3): 1687 doi: 10.1128/JVI.02484-15
74
Helena J. Maier, Benjamin W. Neuman, Erica Bickerton, Sarah M. Keep, Hasan Alrashedi, Ross Hall, Paul Britton. Extensive coronavirus-induced membrane rearrangements are not a determinant of pathogenicityScientific Reports 2016; 6(1) doi: 10.1038/srep27126
75
Isabel Fernández de Castro, Paula F. Zamora, Laura Ooms, José Jesús Fernández, Caroline M.-H. Lai, Bernardo A. Mainou, Terence S. Dermody, Cristina Risco, Anne Moscona. Reovirus Forms Neo-Organelles for Progeny Particle Assembly within Reorganized Cell MembranesmBio 2014; 5(1) doi: 10.1128/mBio.00931-13
76
Wei Zhang, Keren Chen, Xueqing Zhang, Chunhe Guo, Yaosheng Chen, Xiaohong Liu, Guihong Zhang. An integrated analysis of membrane remodeling during porcine reproductive and respiratory syndrome virus replication and assemblyPLOS ONE 2018; 13(7): e0200919 doi: 10.1371/journal.pone.0200919
77
Thorsten G. Müller, Volkan Sakin, Barbara Müller. A Spotlight on Viruses—Application of Click Chemistry to Visualize Virus-Cell InteractionsMolecules 2019; 24(3): 481 doi: 10.3390/molecules24030481
78
GUILHERME G. TRINDADE, SAMYRA M.C. CAXITO, ALESSANDRA REJANE E.O. XAVIER, MAURO A.S. XAVIER, FABIANA BRANDÃO. COVID-19: therapeutic approaches description and discussionAnais da Academia Brasileira de Ciências 2020; 92(2) doi: 10.1590/0001-3765202020200466
79
David Paul, Vanesa Madan, Ralf Bartenschlager. Hepatitis C Virus RNA Replication and Assembly: Living on the Fat of the LandCell Host & Microbe 2014; 16(5): 569 doi: 10.1016/j.chom.2014.10.008
80
Laura Bankers, Caitlin Miller, Guoqi Liu, Chommanart Thongkittidilok, James Morrison, Eric M. Poeschla. Development of IFN-Stimulated Gene Expression from Embryogenesis through Adulthood, with and without Constitutive MDA5 Pathway ActivationThe Journal of Immunology 2020; 204(10): 2791 doi: 10.4049/jimmunol.1901421
81
Adam J. López-Denman, Daniel E. Tuipulotu, Jessica B. Ross, Alice M. Trenerry, Peter A. White, Jason M. Mackenzie. Nuclear localisation of West Nile virus NS5 protein modulates host gene expressionVirology 2021; 559: 131 doi: 10.1016/j.virol.2021.03.018
82
Gerwyn Morris, Tatiana Barichello, Brendon Stubbs, Cristiano A. Köhler, André F. Carvalho, Michael Maes. Zika Virus as an Emerging Neuropathogen: Mechanisms of Neurovirulence and Neuro-Immune InteractionsMolecular Neurobiology 2018; 55(5): 4160 doi: 10.1007/s12035-017-0635-y
83
Diede Oudshoorn, Barbara van der Hoeven, Ronald W. A. L. Limpens, Corrine Beugeling, Eric J. Snijder, Montserrat Bárcena, Marjolein Kikkert, Peter Palese, Adolfo García-Sastre, Inés Romero-Brey. Antiviral Innate Immune Response Interferes with the Formation of Replication-Associated Membrane Structures Induced by a Positive-Strand RNA VirusmBio 2016; 7(6) doi: 10.1128/mBio.01991-16
84
Woan-Ing Twu, Ji-Young Lee, Heeyoung Kim, Vibhu Prasad, Berati Cerikan, Uta Haselmann, Keisuke Tabata, Ralf Bartenschlager. Contribution of autophagy machinery factors to HCV and SARS-CoV-2 replication organelle formationCell Reports 2021; 37(8): 110049 doi: 10.1016/j.celrep.2021.110049
85
Debora Stelitano, Mirko Cortese. Electron microscopy: The key to resolve RNA viruses replication organellesMolecular Microbiology 2024; 121(4): 679 doi: 10.1111/mmi.15173
86
Nadya Urakova, Tanja Strive, Michael Frese, Naomi Forrester. RNA-Dependent RNA Polymerases of Both Virulent and Benign Rabbit Caliciviruses Induce Striking Rearrangement of Golgi MembranesPLOS ONE 2017; 12(1): e0169913 doi: 10.1371/journal.pone.0169913
87
Wai-Lok Yau, Van Nguyen-Dinh, Elin Larsson, Richard Lindqvist, Anna K. Överby, Richard Lundmark, Julie K. Pfeiffer. Model System for the Formation of Tick-Borne Encephalitis Virus Replication Compartments without Viral RNA ReplicationJournal of Virology 2019; 93(18) doi: 10.1128/JVI.00292-19
88
Eliana G. Acosta, Anil Kumar, Ralf Bartenschlager. Advances in Virus Research 2014; 88: 1 doi: 10.1016/B978-0-12-800098-4.00001-5
89
Pavel Montes de Oca-B. Evidence of mitochondria origin of SARS-CoV-2 double-membrane vesicles: a review.F1000Research 2022; 10: 1009 doi: 10.12688/f1000research.73170.2
90
Katrien C. K. Poelaert, Regina G. D. M. van Kleef, Mengying Liu, Arno van Vliet, Heyrhyoung Lyoo, Lora-Sophie Gerber, Yoshiki Narimatsu, Christian Büll, Henrik Clausen, Erik de Vries, Remco H. S. Westerink, Frank J. M. van Kuppeveld, Carolyn B. Coyne. Enterovirus D-68 Infection of Primary Rat Cortical Neurons: Entry, Replication, and Functional ConsequencesmBio 2023; 14(2) doi: 10.1128/mbio.00245-23
91
Peter A. C. Wing, Nathalie M. Schmidt, Rory Peters, Maximilian Erdmann, Rachel Brown, Hao Wang, Leo Swadling, Joseph Newman, Nazia Thakur, Kaho Shionoya, Sophie B. Morgan, Timothy SC Hinks, Koichi Watashi, Dalan Bailey, Scott B. Hansen, Andrew D. Davidson, Mala K. Maini, Jane A. McKeating, Stephanie Pfaender. An ACAT inhibitor suppresses SARS-CoV-2 replication and boosts antiviral T cell activityPLOS Pathogens 2023; 19(5): e1011323 doi: 10.1371/journal.ppat.1011323
92
Edmund Kozieł, Józef Julian Bujarski, Katarzyna Otulak Kozieł. Plant RNA Viruses2023; : 311 doi: 10.1016/B978-0-323-95339-9.00008-9
93
Markus M. Knodel, Gabriel Wittum, Jürgen Vollmer. Efficient Estimates of Surface Diffusion Parameters for Spatio-Temporally Resolved Virus Replication DynamicsInternational Journal of Molecular Sciences 2024; 25(5): 2993 doi: 10.3390/ijms25052993
94
Steven M. Pascal, Ravindranath Garimella, Meghan S. Warden, Komala Ponniah. Structural Biology of the Enterovirus Replication-Linked 5′-Cloverleaf RNA and Associated Virus ProteinsMicrobiology and Molecular Biology Reviews 2020; 84(2) doi: 10.1128/MMBR.00062-19
95
Ryan M. Hekman, Adam J. Hume, Raghuveera Kumar Goel, Kristine M. Abo, Jessie Huang, Benjamin C. Blum, Rhiannon B. Werder, Ellen L. Suder, Indranil Paul, Sadhna Phanse, Ahmed Youssef, Konstantinos D. Alysandratos, Dzmitry Padhorny, Sandeep Ojha, Alexandra Mora-Martin, Dmitry Kretov, Peter E.A. Ash, Mamta Verma, Jian Zhao, J.J. Patten, Carlos Villacorta-Martin, Dante Bolzan, Carlos Perea-Resa, Esther Bullitt, Anne Hinds, Andrew Tilston-Lunel, Xaralabos Varelas, Shaghayegh Farhangmehr, Ulrich Braunschweig, Julian H. Kwan, Mark McComb, Avik Basu, Mohsan Saeed, Valentina Perissi, Eric J. Burks, Matthew D. Layne, John H. Connor, Robert Davey, Ji-Xin Cheng, Benjamin L. Wolozin, Benjamin J. Blencowe, Stefan Wuchty, Shawn M. Lyons, Dima Kozakov, Daniel Cifuentes, Michael Blower, Darrell N. Kotton, Andrew A. Wilson, Elke Mühlberger, Andrew Emili. Actionable Cytopathogenic Host Responses of Human Alveolar Type 2 Cells to SARS-CoV-2Molecular Cell 2020; 80(6): 1104 doi: 10.1016/j.molcel.2020.11.028
96
Justine Girard, Olivier Le Bihan, Joséphine Lai-Kee-Him, Maria Girleanu, Eric Bernard, Cedric Castellarin, Matthew Chee, Aymeric Neyret, Danièle Spehner, Xavier Holy, Anne-Laure Favier, Laurence Briant, Patrick Bron, Mark T. Heise. In situ fate of Chikungunya virus replication organelles Journal of Virology 2024; 98(7) doi: 10.1128/jvi.00368-24
97
Lingbao Kong, Akira Fujimoto, Mariko Nakamura, Haruyo Aoyagi, Mami Matsuda, Koichi Watashi, Ryosuke Suzuki, Minetaro Arita, Satoshi Yamagoe, Naoshi Dohmae, Takehiro Suzuki, Yuriko Sakamaki, Shizuko Ichinose, Tetsuro Suzuki, Takaji Wakita, Hideki Aizaki, J.-H. J. Ou. Prolactin Regulatory Element Binding Protein Is Involved in Hepatitis C Virus Replication by Interaction with NS4BJournal of Virology 2016; 90(6): 3093 doi: 10.1128/JVI.01540-15
98
Mirko Cortese, Sarah Goellner, Eliana Gisela Acosta, Christopher John Neufeldt, Olga Oleksiuk, Marko Lampe, Uta Haselmann, Charlotta Funaya, Nicole Schieber, Paolo Ronchi, Martin Schorb, Priit Pruunsild, Yannick Schwab, Laurent Chatel-Chaix, Alessia Ruggieri, Ralf Bartenschlager. Ultrastructural Characterization of Zika Virus Replication FactoriesCell Reports 2017; 18(9): 2113 doi: 10.1016/j.celrep.2017.02.014
99
Stephanie Chan, Jing-hsiung Ou. Hepatitis C Virus-Induced Autophagy and Host Innate Immune ResponseViruses 2017; 9(8): 224 doi: 10.3390/v9080224
100
Jillian N. Whelan, Nicholas A. Parenti, Joshua Hatterschide, David M. Renner, Yize Li, Hanako M. Reyes, Beihua Dong, Erick R. Perez, Robert H. Silverman, Susan R. Weiss. Zika virus employs the host antiviral RNase L protein to support replication factory assemblyProceedings of the National Academy of Sciences 2021; 118(22) doi: 10.1073/pnas.2101713118
101
Rodney K. Lyn, Ragunath Singaravelu, Stacia Kargman, Shifawn O'Hara, Helen Chan, Renata Oballa, Zheng Huang, Daniel M. Jones, Andrew Ridsdale, Rodney S. Russell, Anthony W. Partridge, John Paul Pezacki. Stearoyl-CoA desaturase inhibition blocks formation of hepatitis C virus-induced specialized membranesScientific Reports 2014; 4(1) doi: 10.1038/srep04549
102
Heba A. H. Zaghloul, Robert H. Hice, Peter Arensburger, Dennis K. Bideshi, Brian A. Federici. Extended in vivo transcriptomes of two ascoviruses with different tissue tropisms reveal alternative mechanisms for enhancing virus reproduction in hemolymphScientific Reports 2021; 11(1) doi: 10.1038/s41598-021-95553-y
103
Nadya Urakova, Michael Frese, Robyn N. Hall, June Liu, Markus Matthaei, Tanja Strive. Expression and partial characterisation of rabbit haemorrhagic disease virus non-structural proteinsVirology 2015; 484: 69 doi: 10.1016/j.virol.2015.05.004
104
Markus M. Knodel, Paul Targett-Adams, Alfio Grillo, Eva Herrmann, Gabriel Wittum. Advanced Hepatitis C Virus Replication PDE Models within a Realistic Intracellular Geometric EnvironmentInternational Journal of Environmental Research and Public Health 2019; 16(3): 513 doi: 10.3390/ijerph16030513
105
Darius Schweinoch, Pia Bachmann, Diana Clausznitzer, Marco Binder, Lars Kaderali. Mechanistic modeling explains the dsRNA length-dependent activation of the RIG-I mediated immune responseJournal of Theoretical Biology 2020; 500: 110336 doi: 10.1016/j.jtbi.2020.110336
106
Mirjam Schilling, Anne Bridgeman, Nicki Gray, Jonny Hertzog, Philip Hublitz, Alain Kohl, Jan Rehwinkel. RIG-I Plays a Dominant Role in the Induction of Transcriptional Changes in Zika Virus-Infected Cells, which Protect from Virus-Induced Cell DeathCells 2020; 9(6): 1476 doi: 10.3390/cells9061476
107
Nikolay Kovalev, Isabel Fernández de Castro Martín, Judit Pogany, Daniel Barajas, Kunj Pathak, Cristina Risco, Peter D. Nagy, A. Simon. Role of Viral RNA and Co-opted Cellular ESCRT-I and ESCRT-III Factors in Formation of Tombusvirus Spherules Harboring the Tombusvirus ReplicaseJournal of Virology 2016; 90(7): 3611 doi: 10.1128/JVI.02775-15
108
James Lok, Maria Fernanda Guerra Veloz, Kosh Agarwal. Comprehensive Guide to Hepatitis Advances2023; : 251 doi: 10.1016/B978-0-323-98368-6.00017-3
109
Preethi Sathanantham, Wenhao Zhao, Guijuan He, Austin Murray, Emma Fenech, Arturo Diaz, Maya Schuldiner, Xiaofeng Wang, Richard J. Kuhn. A conserved viral amphipathic helix governs the replication site-specific membrane associationPLOS Pathogens 2022; 18(9): e1010752 doi: 10.1371/journal.ppat.1010752
110
Helena J. Maier, Philippa C. Hawes, Eleanor M. Cottam, Judith Mantell, Paul Verkade, Paul Monaghan, Tom Wileman, Paul Britton, Michael J. Buchmeier. Infectious Bronchitis Virus Generates Spherules from Zippered Endoplasmic Reticulum MembranesmBio 2013; 4(5) doi: 10.1128/mBio.00801-13
111
Markus Knodel, Arne Nägel, Sebastian Reiter, Andreas Vogel, Paul Targett-Adams, John McLauchlan, Eva Herrmann, Gabriel Wittum. Quantitative Analysis of Hepatitis C NS5A Viral Protein Dynamics on the ER SurfaceViruses 2018; 10(1): 28 doi: 10.3390/v10010028
112
Inés Romero-Brey, Volker Lohmann. Hepatitis C Virus I2016; : 149 doi: 10.1007/978-4-431-56098-2_8
113
Hirofumi Ohashi, Feng Wang, Frank Stappenbeck, Kana Tsuchimoto, Chisa Kobayashi, Wakana Saso, Michiyo Kataoka, Masako Yamasaki, Kouji Kuramochi, Masamichi Muramatsu, Tadaki Suzuki, Camille Sureau, Makoto Takeda, Takaji Wakita, Farhad Parhami, Koichi Watashi. Identification of Anti-Severe Acute Respiratory Syndrome-Related Coronavirus 2 (SARS-CoV-2) Oxysterol Derivatives In VitroInternational Journal of Molecular Sciences 2021; 22(6): 3163 doi: 10.3390/ijms22063163
114
Voraphoj Nilaratanakul, Debra A. Hauer, Diane E. Griffin. Development of encoded Broccoli RNA aptamers for live cell imaging of alphavirus genomic and subgenomic RNAsScientific Reports 2020; 10(1) doi: 10.1038/s41598-020-61573-3
115
Helena J Maier, Philippa C Hawes, Sarah M Keep, Paul Britton. Spherules and IBVBioengineered 2014; 5(5): 288 doi: 10.4161/bioe.29323
116
Daniel Barajas, Kai Xu, Isabel Fernández de Castro Martín, Zsuzsanna Sasvari, Federica Brandizzi, Cristina Risco, Peter D. Nagy, Aiming Wang. Co-opted Oxysterol-Binding ORP and VAP Proteins Channel Sterols to RNA Virus Replication Sites via Membrane Contact SitesPLoS Pathogens 2014; 10(10): e1004388 doi: 10.1371/journal.ppat.1004388
117
Markus M. Knodel, Arne Nägel, Sebastian Reiter, Martin Rupp, Andreas Vogel, Paul Targett-Adams, Eva Herrmann, Gabriel Wittum. Multigrid analysis of spatially resolved hepatitis C virus protein simulationsComputing and Visualization in Science 2015; 17(5): 235 doi: 10.1007/s00791-016-0261-7
118
Nicholas J. Lennemann, Azia S. Evans, Carolyn B. Coyne. Imaging-Based Reporter Systems to Define CVB-Induced Membrane Remodeling in Living CellsViruses 2020; 12(10): 1074 doi: 10.3390/v12101074
119
Zika Virus and Diseases2018; : 83 doi: 10.1002/9781119408673.ch6
120
Aimeric Agaoua, Abdelhafid Bendahmane, Frédéric Moquet, Catherine Dogimont. Membrane Trafficking Proteins: A New Target to Identify Resistance to Viruses in PlantsPlants 2021; 10(10): 2139 doi: 10.3390/plants10102139
121
Barbara van der Hoeven, Diede Oudshoorn, Abraham J. Koster, Eric J. Snijder, Marjolein Kikkert, Montserrat Bárcena. Biogenesis and architecture of arterivirus replication organellesVirus Research 2016; 220: 70 doi: 10.1016/j.virusres.2016.04.001
122
Srikanta Dash, Srinivas Chava, Yucel Aydin, Partha Chandra, Pauline Ferraris, Weina Chen, Luis Balart, Tong Wu, Robert Garry. Hepatitis C Virus Infection Induces Autophagy as a Prosurvival Mechanism to Alleviate Hepatic ER-Stress ResponseViruses 2016; 8(5): 150 doi: 10.3390/v8050150
123
Aref Movaqar, Atieh Yaghoubi, SA Rahim Rezaee, Saeid A Jamehdar, Saman Soleimanpour. Coronaviruses Construct an Interconnection Way with ERAD and AutophagyFuture Microbiology 2021; 16(14): 1135 doi: 10.2217/fmb-2021-0044
124
Thomas Kehrer, Adolfo García-Sastre, Lisa Miorin. Control of Innate Immune Activation by Severe Acute Respiratory Syndrome Coronavirus 2 and Other CoronavirusesJournal of Interferon & Cytokine Research 2021; 41(6): 205 doi: 10.1089/jir.2021.0060
125
Charlotte E. Melia, Hilde M. van der Schaar, Heyrhyoung Lyoo, Ronald W.A.L. Limpens, Qian Feng, Maryam Wahedi, Gijs J. Overheul, Ronald P. van Rij, Eric J. Snijder, Abraham J. Koster, Montserrat Bárcena, Frank J.M. van Kuppeveld. Escaping Host Factor PI4KB Inhibition: Enterovirus Genomic RNA Replication in the Absence of Replication OrganellesCell Reports 2017; 21(3): 587 doi: 10.1016/j.celrep.2017.09.068
126
Marion Delphin, Manon Desmares, Svenja Schuehle, Mathias Heikenwalder, David Durantel, Suzanne Faure‐Dupuy. How to get away with liver innate immunity? A viruses’ taleLiver International 2021; 41(11): 2547 doi: 10.1111/liv.15054
127
Svetlana V. Bayandina, Dmitry V. Mukha. Saccharomyces cerevisiae as a Model for Studying Human Neurodegenerative Disorders: Viral Capsid Protein ExpressionInternational Journal of Molecular Sciences 2023; 24(24): 17213 doi: 10.3390/ijms242417213
128
Markus Knodel, Sebastian Reiter, Paul Targett-Adams, Alfio Grillo, Eva Herrmann, Gabriel Wittum. 3D Spatially Resolved Models of the Intracellular Dynamics of the Hepatitis C Genome Replication CycleViruses 2017; 9(10): 282 doi: 10.3390/v9100282
129
Lochlain Corliss, Madeline Holliday, Nicholas J. Lennemann. Dual-fluorescent reporter for live-cell imaging of the ER during DENV infectionFrontiers in Cellular and Infection Microbiology 2022; 12 doi: 10.3389/fcimb.2022.1042735
130
Nicole Doyle, Jennifer Simpson, Philippa C. Hawes, Helena J. Maier. Coronavirus RNA Synthesis Takes Place within Membrane-Bound SitesViruses 2021; 13(12): 2540 doi: 10.3390/v13122540
131
Dong Lin, Yijia Chen, Ali Riza Koksal, Srikanta Dash, Yucel Aydin. Targeting ER stress/PKA/GSK-3β/β-catenin pathway as a potential novel strategy for hepatitis C virus-infected patientsCell Communication and Signaling 2023; 21(1) doi: 10.1186/s12964-023-01081-9
132
Apala Pal, Sachin Kumar Tripathi, Priya Rani, Meghana Rastogi, Saumitra Das. p53 and RNA viruses: The tug of warWIREs RNA 2024; 15(1) doi: 10.1002/wrna.1826
133
Nicole Doyle, Benjamin W. Neuman, Jennifer Simpson, Philippa C. Hawes, Judith Mantell, Paul Verkade, Hasan Alrashedi, Helena J. Maier. Infectious Bronchitis Virus Nonstructural Protein 4 Alone Induces Membrane PairingViruses 2018; 10(9): 477 doi: 10.3390/v10090477
134
David Paul, Ralf Bartenschlager. Flaviviridae Replication Organelles: Oh, What a Tangled Web We WeaveAnnual Review of Virology 2015; 2(1): 289 doi: 10.1146/annurev-virology-100114-055007
135
Lucio Ayres Caldas, Davis Fernandes Ferreira, Tânia Rosaria Pereira Freitas. Prostaglandin A1 triggers Mayaro virus inhibition and heat shock protein 70 expression in an epithelial cell modelRevista da Sociedade Brasileira de Medicina Tropical 2018; 51(5): 584 doi: 10.1590/0037-8682-0235-2018
136
Jérôme Gouttenoire, Roland Montserret, David Paul, Rosa Castillo, Simon Meister, Ralf Bartenschlager, François Penin, Darius Moradpour, Glenn Randall. Aminoterminal Amphipathic α-Helix AH1 of Hepatitis C Virus Nonstructural Protein 4B Possesses a Dual Role in RNA Replication and Virus ProductionPLoS Pathogens 2014; 10(11): e1004501 doi: 10.1371/journal.ppat.1004501
137
María Amelia Sánchez Pina, Cristina Gómez-Aix, Eduardo Méndez-López, Blanca Gosalvez Bernal, Miguel A. Aranda. Imaging Techniques to Study Plant Virus Replication and Vertical TransmissionViruses 2021; 13(3): 358 doi: 10.3390/v13030358
138
Ina Karen Stoeck, Ji-Young Lee, Keisuke Tabata, Inés Romero-Brey, David Paul, Philipp Schult, Volker Lohmann, Lars Kaderali, Ralf Bartenschlager, Julie K. Pfeiffer. Hepatitis C Virus Replication Depends on Endosomal Cholesterol HomeostasisJournal of Virology 2018; 92(1) doi: 10.1128/JVI.01196-17
139
Tzu-Chun Chen, Chung-Han Hsieh, Peter Sarnow, Aleem Siddiqui. Supporting Role for GTPase Rab27a in Hepatitis C Virus RNA Replication through a Novel miR-122-Mediated EffectPLOS Pathogens 2015; 11(8): e1005116 doi: 10.1371/journal.ppat.1005116
140
Priscilla L. Yang. Viral Pathogenesis2016; : 181 doi: 10.1016/B978-0-12-800964-2.00014-8
141
Farkhanda Yasmin, Tahir Yaqub, Idrees Khan, Wasim Shahzad, Abu Saeed Hashmi, Zarfishan Tahir, Nadia Mukhtar, Sajid Umar. Antiviral Activity of Thiazolide Derivatives Against Dengue Virus in Huh-7 Cell LineJundishapur Journal of Microbiology 2017; 11(2) doi: 10.5812/jjm.62467
142
Yury S. Bykov, Mirko Cortese, John A. G. Briggs, Ralf Bartenschlager. Correlative light and electron microscopy methods for the study of virus–cell interactionsFEBS Letters 2016; 590(13): 1877 doi: 10.1002/1873-3468.12153
143
Nkerorema Djodji Damas, Nicolas Fossat, Troels K. H. Scheel. Functional Interplay between RNA Viruses and Non-Coding RNA in MammalsNon-Coding RNA 2019; 5(1): 7 doi: 10.3390/ncrna5010007
144
Nunya Chotiwan, Barbara G. Andre, Irma Sanchez-Vargas, M. Nurul Islam, Jeffrey M. Grabowski, Amber Hopf-Jannasch, Erik Gough, Ernesto Nakayasu, Carol D. Blair, John T. Belisle, Catherine A. Hill, Richard J. Kuhn, Rushika Perera, Sara Cherry. Dynamic remodeling of lipids coincides with dengue virus replication in the midgut of Aedes aegypti mosquitoesPLOS Pathogens 2018; 14(2): e1006853 doi: 10.1371/journal.ppat.1006853
145
Mauricio Comas-Garcia. Packaging of Genomic RNA in Positive-Sense Single-Stranded RNA Viruses: A Complex StoryViruses 2019; 11(3): 253 doi: 10.3390/v11030253
146
Patricia Noguera, Matthias Klinger, Histro Örün, Bianka Grunow, Jorge del‐Pozo. Ultrastructural insights into the replication cycle of salmon pancreas disease virus (SPDV) using salmon cardiac primary cultures (SCPCs)Journal of Fish Diseases 2021; 44(12): 2031 doi: 10.1111/jfd.13518
147
Gesche K. Gerresheim, Elke Roeb, Audrey M. Michel, Michael Niepmann. Hepatitis C Virus Downregulates Core Subunits of Oxidative Phosphorylation, Reminiscent of the Warburg Effect in Cancer CellsCells 2019; 8(11): 1410 doi: 10.3390/cells8111410
148
Harsh Chhajer, Vaseef A. Rizvi, Rahul Roy. Life cycle process dependencies of positive-sense RNA viruses suggest strategies for inhibiting productive cellular infectionJournal of The Royal Society Interface 2021; 18(184) doi: 10.1098/rsif.2021.0401
149
Xu Zhou, Lingxiang Zhu, Cheryl Bondy, Jun Wang, Qianwen Luo, Yin Chen. AG1478 Elicits a Novel Anti-Influenza Function via an EGFR-Independent, GBF1-Dependent PathwayInternational Journal of Molecular Sciences 2022; 23(10): 5557 doi: 10.3390/ijms23105557
150
Mario Luis Garcia de Figueiredo, Luiz Tadeu Moraes Figueiredo. Emerging alphaviruses in the Americas: Chikungunya and MayaroRevista da Sociedade Brasileira de Medicina Tropical 2014; 47(6): 677 doi: 10.1590/0037-8682-0246-2014
151
Julien Lescar, Sherryl Soh, Le Tian Lee, Subhash G. Vasudevan, Congbao Kang, Siew Pheng Lim. Dengue and Zika: Control and Antiviral Treatment StrategiesAdvances in Experimental Medicine and Biology 2018; 1062: 115 doi: 10.1007/978-981-10-8727-1_9
152
Xinhong Li, Mingshu Wang, Anchun Cheng, Xingjian Wen, Xumin Ou, Sai Mao, Qun Gao, Di Sun, Renyong Jia, Qiao Yang, Ying Wu, Dekang Zhu, Xinxin Zhao, Shun Chen, Mafeng Liu, Shaqiu Zhang, Yunya Liu, Yanling Yu, Ling Zhang, Bin Tian, Leichang Pan, Xiaoyue Chen. Enterovirus Replication Organelles and Inhibitors of Their FormationFrontiers in Microbiology 2020; 11 doi: 10.3389/fmicb.2020.01817
153
Diego S. Ferrero, Victor M. Ruiz-Arroyo, Nicolas Soler, Isabel Usón, Alba Guarné, Núria Verdaguer, Félix A. Rey. Supramolecular arrangement of the full-length Zika virus NS5PLOS Pathogens 2019; 15(4): e1007656 doi: 10.1371/journal.ppat.1007656
154
Ginés Ávila‐Pérez, María Teresa Rejas, Francisco Javier Chichón, Milagros Guerra, José Jesús Fernández, Dolores Rodríguez. Architecture of torovirus replicative organellesMolecular Microbiology 2022; 117(4): 837 doi: 10.1111/mmi.14875
155
Markus M. Knodel, Arne Nägel, Eva Herrmann, Gabriel Wittum. Intracellular “In Silico Microscopes”—Comprehensive 3D Spatio-Temporal Virus Replication Model SimulationsViruses 2024; 16(6): 840 doi: 10.3390/v16060840
156
C.F. Arias, T. López, A. Murillo. Viral Gastroenteritis2016; : 483 doi: 10.1016/B978-0-12-802241-2.00023-7
157
Pavel Montes de Oca-B. Evidence of mitochondria origin of SARS-CoV-2 double-membrane vesicles: a review.F1000Research 2021; 10: 1009 doi: 10.12688/f1000research.73170.1
158
Hui-Chun Li, Chee-Hing Yang, Shih-Yen Lo. Cellular factors involved in the hepatitis C virus life cycleWorld Journal of Gastroenterology 2021; 27(28): 4555-4581 doi: 10.3748/wjg.v27.i28.4555
159
Mira Laajala, Marleen Zwaagstra, Mari Martikainen, Magloire Pandoua Nekoua, Mehdi Benkahla, Famara Sane, Emily Gervais, Grace Campagnola, Anni Honkimaa, Amir-Babak Sioofy-Khojine, Heikki Hyöty, Ravi Ojha, Marie Bailliot, Giuseppe Balistreri, Olve Peersen, Didier Hober, Frank Van Kuppeveld, Varpu Marjomäki, Ralph A. Tripp, Minetaro Arita. Vemurafenib Inhibits Acute and Chronic Enterovirus Infection by Affecting Cellular Kinase Phosphatidylinositol 4-Kinase Type IIIβMicrobiology Spectrum 2023; 11(4) doi: 10.1128/spectrum.00552-23
160
Yuanzhi Liu, Yu Zhang, Mingshu Wang, Anchun Cheng, Qiao Yang, Ying Wu, Renyong Jia, Mafeng Liu, Dekang Zhu, Shun Chen, Shaqiu Zhang, XinXin Zhao, Juan Huang, Sai Mao, Xumin Ou, Qun Gao, Yin Wang, Zhiwen Xu, Zhengli Chen, Ling Zhu, Qihui Luo, Yunya Liu, Yanling Yu, Ling Zhang, Bin Tian, Leichang Pan, Xiaoyue Chen. Structures and Functions of the 3′ Untranslated Regions of Positive-Sense Single-Stranded RNA Viruses Infecting Humans and AnimalsFrontiers in Cellular and Infection Microbiology 2020; 10 doi: 10.3389/fcimb.2020.00453
161
Caroline Büttner, Maxi Heer, Jasmin Traichel, Martin Schwemmle, Bernd Heimrich. Zika Virus-Mediated Death of Hippocampal Neurons Is Independent From Maturation StateFrontiers in Cellular Neuroscience 2019; 13 doi: 10.3389/fncel.2019.00389
162
Charlotte E. Melia, Christopher J. Peddie, Anja W. M. de Jong, Eric J. Snijder, Lucy M. Collinson, Abraham J. Koster, Hilde M. van der Schaar, Frank J. M. van Kuppeveld, Montserrat Bárcena, Michael J. Buchmeier, Benjamin Neuman, Stanley Lemon. Origins of Enterovirus Replication Organelles Established by Whole-Cell Electron MicroscopymBio 2019; 10(3) doi: 10.1128/mBio.00951-19
163
Nathaniel M. Byers, Amy C. Fleshman, Rushika Perera, Claudia R. Molins. Metabolomic Insights into Human Arboviral Infections: Dengue, Chikungunya, and Zika VirusesViruses 2019; 11(3): 225 doi: 10.3390/v11030225
164
María Cecilia Gimenez, Mariam Issa, Javal Sheth, María Isabel Colombo, Mauricio R. Terebiznik, Laura R. Delgui, Susana López. Phosphatidylinositol 3-Phosphate Mediates the Establishment of Infectious Bursal Disease Virus Replication Complexes in Association with Early EndosomesJournal of Virology 2021; 95(6) doi: 10.1128/JVI.02313-20
165
Miriam Kutsch, Jörn Coers. Human guanylate binding proteins: nanomachines orchestrating host defenseThe FEBS Journal 2021; 288(20): 5826 doi: 10.1111/febs.15662
166
Tero Ahola, Gerald McInerney, Andres Merits. Advances in Virus Research 2021; 111: 111 doi: 10.1016/bs.aivir.2021.07.003
167
Rayan Farhat, Maliki Ankavay, Nadjet Lebsir, Jérôme Gouttenoire, Catherine L. Jackson, Czeslaw Wychowski, Darius Moradpour, Jean Dubuisson, Yves Rouillé, Laurence Cocquerel. Identification of GBF1 as a cellular factor required for hepatitis E virus RNA replicationCellular Microbiology 2018; 20(1): e12804 doi: 10.1111/cmi.12804
168
Min Seok Song, Dong-Kun Lee, Chung-Young Lee, Sang-Cheol Park, Jinsung Yang. Host Subcellular Organelles: Targets of Viral ManipulationInternational Journal of Molecular Sciences 2024; 25(3): 1638 doi: 10.3390/ijms25031638
169
Kota Nishiuchi, Hirofumi Ohashi, Kazane Nishioka, Masako Yamasaki, Masateru Furuta, Takumi Mashiko, Shusuke Tomoshige, Kenji Ohgane, Shinji Kamisuki, Koichi Watashi, Kouji Kuramochi. Synthesis and Antiviral Activities of Neoechinulin B and Its DerivativesJournal of Natural Products 2022; 85(1): 284 doi: 10.1021/acs.jnatprod.1c01120
170
Cuiling Ding, Yibo Chen, Gen Miao, Zhongtian Qi. Research Advances on the Role of Lipids in the Life Cycle of Human CoronavirusesMicroorganisms 2023; 12(1): 63 doi: 10.3390/microorganisms12010063
171
Hans C. Leier, William B. Messer, Fikadu G. Tafesse, Rebecca Ellis Dutch. Lipids and pathogenic flaviviruses: An intimate unionPLOS Pathogens 2018; 14(5): e1006952 doi: 10.1371/journal.ppat.1006952
172
Gorben P. Pijlman. Enveloped virus‐like particles as vaccines against pathogenic arbovirusesBiotechnology Journal 2015; 10(5): 659 doi: 10.1002/biot.201400427
173
Laurent Chatel-Chaix, Mirko Cortese, Inés Romero-Brey, Silke Bender, Christopher John Neufeldt, Wolfgang Fischl, Pietro Scaturro, Nicole Schieber, Yannick Schwab, Bernd Fischer, Alessia Ruggieri, Ralf Bartenschlager. Dengue Virus Perturbs Mitochondrial Morphodynamics to Dampen Innate Immune ResponsesCell Host & Microbe 2016; 20(3): 342 doi: 10.1016/j.chom.2016.07.008
174
David Paul, Vanesa Madan, Omar Ramirez, Maja Bencun, Ina Karen Stoeck, Vlastimil Jirasko, Ralf Bartenschlager, Julie K. Pfeiffer. Glycine Zipper Motifs in Hepatitis C Virus Nonstructural Protein 4B Are Required for the Establishment of Viral Replication OrganellesJournal of Virology 2018; 92(4) doi: 10.1128/JVI.01890-17
175
Andrea Murillo, Rosario Vera-Estrella, Bronwyn J. Barkla, Ernesto Méndez, Carlos F. Arias, K. Kirkegaard. Identification of Host Cell Factors Associated with Astrovirus Replication in Caco-2 CellsJournal of Virology 2015; 89(20): 10359 doi: 10.1128/JVI.01225-15
176
Cristina Romero-López, Alfredo Berzal-Herranz. The Role of the RNA-RNA Interactome in the Hepatitis C Virus Life CycleInternational Journal of Molecular Sciences 2020; 21(4): 1479 doi: 10.3390/ijms21041479
177
Jun Liu, Brandon A. Kline, Tara A. Kenny, Darci R. Smith, Veronica Soloveva, Brett Beitzel, Song Pang, Stephen Lockett, Harald F. Hess, Gustavo Palacios, Jens H. Kuhn, Mei G. Sun, Xiankun Zeng. A novel sheet-like virus particle array is a hallmark of Zika virus infectionEmerging Microbes & Infections 2018; 7(1): 1 doi: 10.1038/s41426-018-0071-8
178
Yuya Hirai, Yasuhiro Hirano, Atsushi Matsuda, Yasushi Hiraoka, Tomoyuki Honda, Keizo Tomonaga. Borna Disease Virus Assembles Porous Cage-like Viral Factories in the NucleusJournal of Biological Chemistry 2016; 291(50): 25789 doi: 10.1074/jbc.M116.746396
179
Maija K. Pietilä, Kirsi Hellström, Tero Ahola. Alphavirus polymerase and RNA replicationVirus Research 2017; 234: 44 doi: 10.1016/j.virusres.2017.01.007
180
Cristina Risco, Isabel Fernández de Castro, Laura Sanz-Sánchez, Kedar Narayan, Giovanna Grandinetti, Sriram Subramaniam. Three-Dimensional Imaging of Viral InfectionsAnnual Review of Virology 2014; 1(1): 453 doi: 10.1146/annurev-virology-031413-085351
181
Jae Seung Lee, Keisuke Tabata, Woan-Ing Twu, Md Shafiqur Rahman, Hee Sun Kim, Jin Bae Yu, Min Hyeok Jee, Ralf Bartenschlager, Sung Key Jang, Glenn Randall. RACK1 mediates rewiring of intracellular networks induced by hepatitis C virus infectionPLOS Pathogens 2019; 15(9): e1008021 doi: 10.1371/journal.ppat.1008021
182
Enzo Maxim Scutigliani, Marjolein Kikkert. Interaction of the innate immune system with positive-strand RNA virus replication organellesCytokine & Growth Factor Reviews 2017; 37: 17 doi: 10.1016/j.cytogfr.2017.05.007
183
Bowen Jiang, Wei Zhang, Yu He, Zhen Wu, Mingshu Wang, Renyong Jia, Dekang Zhu, Mafeng Liu, Xinxin Zhao, Qiao Yang, Ying Wu, Shaqiu Zhang, Juan Huang, Xumin Ou, Di Sun, Anchun Cheng, Shun Chen. The topological model of NS4B and its TMD3 in duck TMUV proliferationPoultry Science 2024; 103(6): 103727 doi: 10.1016/j.psj.2024.103727
184
Pietro Scaturro, Iuni Margaret Laura Trist, David Paul, Anil Kumar, Eliana G. Acosta, Chelsea M. Byrd, Robert Jordan, Andrea Brancale, Ralf Bartenschlager, M. S. Diamond. Characterization of the Mode of Action of a Potent Dengue Virus Capsid InhibitorJournal of Virology 2014; 88(19): 11540 doi: 10.1128/JVI.01745-14
185
David Paul, Simone Hoppe, Gesine Saher, Jacomine Krijnse-Locker, Ralf Bartenschlager. Morphological and Biochemical Characterization of the Membranous Hepatitis C Virus Replication CompartmentJournal of Virology 2013; 87(19): 10612 doi: 10.1128/JVI.01370-13
186
Kaïn van den Elsen, Jun Ping Quek, Dahai Luo. Molecular Insights into the Flavivirus Replication ComplexViruses 2021; 13(6): 956 doi: 10.3390/v13060956
187
Atsuko Sugimoto. Replication Compartments—The Great Survival Strategy for Epstein–Barr Virus Lytic ReplicationMicroorganisms 2022; 10(5): 896 doi: 10.3390/microorganisms10050896
188
Lingling Sun, Justine Mailliot, Christiane Schaffitzel. Nonsense-Mediated mRNA Decay Factor Functions in Human Health and DiseaseBiomedicines 2023; 11(3): 722 doi: 10.3390/biomedicines11030722
189
Raquel Tenorio, Isabel Fernández de Castro, Jonathan J. Knowlton, Paula F. Zamora, Danica M. Sutherland, Cristina Risco, Terence S. Dermody. Function, Architecture, and Biogenesis of Reovirus Replication NeoorganellesViruses 2019; 11(3): 288 doi: 10.3390/v11030288
190
Rehab I Moustafa, Jean Dubuisson, Muriel Lavie. Function of the HCV E1 Envelope Glycoprotein in Viral Entry and AssemblyFuture Virology 2019; 14(3): 171 doi: 10.2217/fvl-2018-0180
191
Clément Mazeaud, Stefan Pfister, Jonathan E Owen, Higor Sette Pereira, Flavie Charbonneau, Zachary E Robinson, Anaïs Anton, Cheyanne L Bemis, Aïssatou Aïcha Sow, Trushar R Patel, Christopher J Neufeldt, Pietro Scaturro, Laurent Chatel-Chaix. Zika virus remodels and hijacks IGF2BP2 ribonucleoprotein complex to promote viral replication organelle biogenesiseLife 2024; 13 doi: 10.7554/eLife.94347.3
192
Ana Shulla, Glenn Randall. (+) RNA virus replication compartments: a safe home for (most) viral replicationCurrent Opinion in Microbiology 2016; 32: 82 doi: 10.1016/j.mib.2016.05.003
193
Victoria Pando-Robles, Cesar V. Batista. Aedes-Borne Virus–Mosquito Interactions: Mass Spectrometry Strategies and FindingsVector-Borne and Zoonotic Diseases 2017; 17(6): 361 doi: 10.1089/vbz.2016.2040
194
Jillian N. Whelan, Yize Li, Robert H. Silverman, Susan R. Weiss, Bryan R. G. Williams. Zika Virus Production Is Resistant to RNase L Antiviral ActivityJournal of Virology 2019; 93(16) doi: 10.1128/JVI.00313-19
195
Christopher J. Neufeldt, Mirko Cortese, Eliana G. Acosta, Ralf Bartenschlager. Rewiring cellular networks by members of the Flaviviridae familyNature Reviews Microbiology 2018; 16(3): 125 doi: 10.1038/nrmicro.2017.170
196
Madhu Sudhan Ravindran, Parikshit Bagchi, Corey Nathaniel Cunningham, Billy Tsai. Opportunistic intruders: how viruses orchestrate ER functions to infect cellsNature Reviews Microbiology 2016; 14(7): 407 doi: 10.1038/nrmicro.2016.60
197
Zubair Anwar. Encyclopedia of Infection and Immunity2022; : 154 doi: 10.1016/B978-0-12-818731-9.00154-3
198
Lonneke Linden, Katja Wolthers, Frank Van Kuppeveld. Replication and Inhibitors of Enteroviruses and ParechovirusesViruses 2015; 7(8): 4529 doi: 10.3390/v7082832
199
Kirsi Hellström, Helena Vihinen, Katri Kallio, Eija Jokitalo, Tero Ahola. Correlative light and electron microscopy enables viral replication studies at the ultrastructural levelMethods 2015; 90: 49 doi: 10.1016/j.ymeth.2015.04.019
200
William A. Hofstadter, Elene Tsopurashvili, Ileana M. Cristea. Viral regulation of organelle membrane contact sitesPLOS Biology 2024; 22(3): e3002529 doi: 10.1371/journal.pbio.3002529
201
Wencheng He, Hailuan Xu, Hongchao Gou, Jin Yuan, Jiedan Liao, Yuming Chen, Shuangqi Fan, Baoming Xie, Shaofeng Deng, Yangyi Zhang, Jinding Chen, Mingqiu Zhao. CSFV Infection Up-Regulates the Unfolded Protein Response to Promote Its ReplicationFrontiers in Microbiology 2017; 8 doi: 10.3389/fmicb.2017.02129
202
Jun Dai, Huan Wang, Ying Liao, Lei Tan, Yingjie Sun, Cuiping Song, Weiwei Liu, Xusheng Qiu, Chan Ding. Coronavirus Infection and Cholesterol MetabolismFrontiers in Immunology 2022; 13 doi: 10.3389/fimmu.2022.791267
203
Rory K. M. Long, Kathleen P. Moriarty, Ben Cardoen, Guang Gao, A. Wayne Vogl, François Jean, Ghassan Hamarneh, Ivan R. Nabi. Super resolution microscopy and deep learning identify Zika virus reorganization of the endoplasmic reticulumScientific Reports 2020; 10(1) doi: 10.1038/s41598-020-77170-3
204
Maria Isabel Giraldo, Oscar Vargas-Cuartas, Juan Carlos Gallego-Gomez, Pei-Yong Shi, Leonardo Padilla-Sanabria, Jhon Carlos Castaño-Osorio, Ricardo Rajsbaum. K48-linked polyubiquitination of dengue virus NS1 protein inhibits its interaction with the viral partner NS4BVirus Research 2018; 246: 1 doi: 10.1016/j.virusres.2017.12.013
205
Kimberly A. Dowd, Theodore C. Pierson. The Many Faces of a Dynamic Virion: Implications of Viral Breathing on Flavivirus Biology and ImmunogenicityAnnual Review of Virology 2018; 5(1): 185 doi: 10.1146/annurev-virology-092917-043300
206
Tetsuro Suzuki. Organelle Contact SitesAdvances in Experimental Medicine and Biology 2017; 997: 199 doi: 10.1007/978-981-10-4567-7_15
207
Leszek J. Klimczak, Thomas A. Randall, Natalie Saini, Jian-Liang Li, Dmitry A. Gordenin, Sebastian D. Fugmann. Similarity between mutation spectra in hypermutated genomes of rubella virus and in SARS-CoV-2 genomes accumulated during the COVID-19 pandemicPLOS ONE 2020; 15(10): e0237689 doi: 10.1371/journal.pone.0237689
208
Bryan S. Sibert, Amanda K. Navine, Janice Pennington, Xiaofeng Wang, Paul Ahlquist, Sebastien Pfeffer. Cowpea chlorotic mottle bromovirus replication proteins support template-selective RNA replication in Saccharomyces cerevisiaePLOS ONE 2018; 13(12): e0208743 doi: 10.1371/journal.pone.0208743
209
Topu Raihan, Muhammad Fazle Rabbee, Puja Roy, Swapnila Choudhury, Kwang-Hyun Baek, Abul Kalam Azad. Microbial Metabolites: The Emerging Hotspot of Antiviral Compounds as Potential Candidates to Avert Viral Pandemic Alike COVID-19Frontiers in Molecular Biosciences 2021; 8 doi: 10.3389/fmolb.2021.732256
210
Anjana Sharma, Satya P. Gupta. Viral Proteases and Their Inhibitors2017; : 1 doi: 10.1016/B978-0-12-809712-0.00001-0
211
Michele Lai, Alessandro De Carli, Carolina Filipponi, Elena Iacono, Veronica La Rocca, Giulia Lottini, Carmen Rita Piazza, Paola Quaranta, Maria Sidoti, Mauro Pistello, Giulia Freer. Lipid balance remodelling by human positive-strand RNA viruses and the contribution of lysosomesAntiviral Research 2022; 206: 105398 doi: 10.1016/j.antiviral.2022.105398
212
Ching-Hung Lin, Hsuan-Yung Lin, Chun-Chun Yang, Hsuan-Wei Hsu, Feng-Cheng Hsieh, Cheng-Yao Yang, Hung-Yi Wu. Preferential cleavage of the coronavirus defective viral genome by cellular endoribonuclease with characteristics of RNase LVirology Journal 2024; 21(1) doi: 10.1186/s12985-024-02549-x
213
Tero Ahola, Andres Merits. Chikungunya Virus2016; : 75 doi: 10.1007/978-3-319-42958-8_6
214
Sara Carapeta, Beatriz do Bem, James McGuinness, Aida Esteves, Ana Abecasis, Ângela Lopes, António P. de Matos, João Piedade, António P.G. de Almeida, Ricardo Parreira. Negeviruses found in multiple species of mosquitoes from southern Portugal: Isolation, genetic diversity, and replication in insect cell cultureVirology 2015; 483: 318 doi: 10.1016/j.virol.2015.04.021