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Wu LH, Zhao D, Niu JY, Fan QL, Peng A, Luo CG, Zhang XQ, Tang T, Yu C, Zhang YY. Development and validation of multi-center serum creatinine-based models for noninvasive prediction of kidney fibrosis in chronic kidney disease. Ren Fail 2025; 47:2489715. [PMID: 40230189 PMCID: PMC12001852 DOI: 10.1080/0886022x.2025.2489715] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2024] [Revised: 02/21/2025] [Accepted: 03/23/2025] [Indexed: 04/16/2025] Open
Abstract
OBJECTIVE Kidney fibrosis is a key pathological feature in the progression of chronic kidney disease (CKD), traditionally diagnosed through invasive kidney biopsy. This study aimed to develop and validate a noninvasive, multi-center predictive model incorporating machine learning (ML) for assessing kidney fibrosis severity using biochemical markers. METHODS This multi-center retrospective study included 598 patients with kidney fibrosis from four hospitals. A training cohort of 360 patients from Shanghai Tongji Hospital was used to develop a predictive nomogram and ML model, with fibrosis severity classified as mild or moderate-to-severe based on Banff scores. Logistic regression identified key predictors, which were incorporated into a nomogram and ML model. An external validation cohort of 238 patients from three additional hospitals was used for model evaluation. RESULTS Serum creatinine (Scr), estimated glomerular filtration rate (eGFR), parathyroid hormone (PTH), brain natriuretic peptide (BNP), and sex were identified as independent predictors of kidney fibrosis severity. The nomogram demonstrated superior discriminative ability in the training cohort (AUC: 0.89, 95% CI: 0.85-0.92) compared to eGFR (AUC: 0.83, 95% CI: 0.78-0.87) and Scr (AUC: 0.87, 95% CI: 0.83-0.91). Among ML models, the Random Forest (RF) model achieved the highest AUC (0.98). In external validation, the nomogram and RF models maintained robust performance with AUCs of 0.86 and 0.79, respectively. CONCLUSION This study presents a validated, noninvasive, multi-center Scr-based machine learning model for assessing kidney fibrosis severity in CKD. The integration of a clinical nomogram and ML approach offers a novel, practical alternative to biopsy for dynamic fibrosis evaluation.
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Affiliation(s)
- Le-hao Wu
- Department of Nephrology, Shanghai Tongji Hospital, Tongji University School of Medicine, Shanghai, China
| | - Dan Zhao
- Department of Nephrology, Shanghai Tongji Hospital, Tongji University School of Medicine, Shanghai, China
| | - Jian-Ying Niu
- Department of Nephrology, Shanghai Fifth People’s Hospital of Fudan University, Shanghai, China
| | - Qiu-Ling Fan
- Department of Nephrology, Shanghai General Hospital of Shanghai Jiao Tong University, Shanghai, China
| | - Ai Peng
- Department of Nephrology, Shanghai Tenth People’s Hospital, Tongji University School of Medicine, Shanghai, China
| | - Cheng-gong Luo
- Department of Nephrology, Shanghai Tongji Hospital, Tongji University School of Medicine, Shanghai, China
| | - Xiao-qin Zhang
- Department of Nephrology, Shanghai Tongji Hospital, Tongji University School of Medicine, Shanghai, China
| | - Tian Tang
- Department of Nephrology, Shanghai Tongji Hospital, Tongji University School of Medicine, Shanghai, China
| | - Chen Yu
- Department of Nephrology, Shanghai Tongji Hospital, Tongji University School of Medicine, Shanghai, China
| | - Ying-ying Zhang
- Department of Nephrology, Shanghai Tongji Hospital, Tongji University School of Medicine, Shanghai, China
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2
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Liu M, Li Z, Zhang X, Wei X. A nomograph model for predicting the risk of diabetes nephropathy. Int Urol Nephrol 2025; 57:1919-1931. [PMID: 39776401 DOI: 10.1007/s11255-024-04351-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2024] [Accepted: 12/22/2024] [Indexed: 01/11/2025]
Abstract
OBJECTIVE Using machine learning to construct a prediction model for the risk of diabetes kidney disease (DKD) in the American diabetes population and evaluate its effect. METHODS First, a dataset of five cycles from 2009 to 2018 was obtained from the National Health and Nutrition Examination Survey (NHANES) database, weighted and then standardized (with the study population in the United States), and the data were processed and randomly grouped using R software. Next, variable selection for DKD patients was conducted using Lasso regression, two-way stepwise iterative regression, and random forest methods. A nomogram model was constructed for the risk prediction of DKD. Finally, the predictive performance, predictive value, calibration, and clinical effectiveness of the model were evaluated through the receipt of ROC curves, Brier score values, calibration curves (CC), and decision curves (DCA). In addition, we will visualize it. RESULTS A total of 4371 participants were selected and included in this study. Patients were randomly divided into a training set (n = 3066 people) and a validation set (n = 1305 people) in a 7:3 ratio. Using machine learning algorithms and drawing Venn diagrams, five variables significantly correlated with DKD risk were identified, namely Age, Hba1c, ALB, Scr, and TP. The area under the ROC curve (AUC) of the training set evaluation index for this model is 0.735, the net benefit rate of DCA is 2%-90%, and the Brier score is 0.172. The area under the ROC curve of the validation set (AUC) is 0.717, and the DCA curve shows a good net benefit rate. The Brier score is 0.177, and the calibration curve results of the validation set and training set are almost consistent. CONCLUSION The DKD risk nomogram model constructed in this study has good predictive performance, which helps to evaluate the risk of DKD as early as possible in clinical practice and formulate relevant intervention and treatment measures. The visual result can be used by doctors or individuals to estimate the probability of DKD risk, as a reference to help make better treatment decisions.
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Affiliation(s)
- Moli Liu
- Medical College, Qinghai University, Xining, 810016, People's Republic of China
| | - Zheng Li
- Department of Endocrinology, Qinghai Provincial People's Hospital, Xining, 810001, People's Republic of China
| | - Xu Zhang
- Blood Purification Center, The Fourth People's Hospital of Qinghai Province, Xining, 810007, People's Republic of China
| | - Xiaoxing Wei
- Medical College, Qinghai University, Xining, 810016, People's Republic of China.
- Qinghai Provincial Key Laboratory of Traditional Chinese Medicine Research for Glucolipid Metabolic Diseases, Xining, 810016, People's Republic of China.
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Van Booven DJ, Chen CB, Kryvenko ON, Punnen S, Sandoval V, Malpani S, Noman A, Ismael F, Wang Y, Qureshi R, Hare JM, Arora H. Mitigating bias in prostate cancer diagnosis using synthetic data for improved AI driven Gleason grading. NPJ Precis Oncol 2025; 9:151. [PMID: 40404862 DOI: 10.1038/s41698-025-00934-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2025] [Accepted: 05/02/2025] [Indexed: 05/24/2025] Open
Abstract
Prostate cancer (PCa) is a leading cause of cancer-related mortality in men, with Gleason grading critical for prognosis and treatment decisions. Machine learning (ML) models offer potential for automated grading but are limited by dataset biases, staining variability, and data scarcity, reducing their generalizability. This study employs generative adversarial networks (GANs) to generate high-quality synthetic histopathological images to address these challenges. A conditional GAN (dcGAN) was developed and validated using expert pathologist review and Spatial Heterogeneous Recurrence Quantification Analysis (SHRQA), achieving 80% diagnostic quality approval. A convolutional neural network (EfficientNet) was trained on original and synthetic images and validated across TCGA, PANDA Challenge, and MAST trial datasets. Integrating synthetic images improved classification accuracy for Gleason 3 (26%, p = 0.0010), Gleason 4 (15%, p = 0.0274), and Gleason 5 (32%, p < 0.0001), with sensitivity and specificity reaching 81% and 92%, respectively. This study demonstrates that synthetic data significantly enhances ML-based Gleason grading accuracy and improves reproducibility, providing a scalable AI-driven solution for precision oncology.
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Affiliation(s)
- Derek J Van Booven
- John P Hussman Institute for Human Genomics, Miller School of Medicine, University of Miami, Miami, FL, USA
| | - Cheng-Bang Chen
- Department of Industrial and Systems Engineering, University of Miami, Miami, FL, USA
| | - Oleksandr N Kryvenko
- Department of Pathology, Miller School of Medicine, University of Miami, Miami, FL, USA
- Desai & Sethi Institute of Urology, Miller School of Medicine, University of Miami, Miami, FL, USA
| | - Sanoj Punnen
- Desai & Sethi Institute of Urology, Miller School of Medicine, University of Miami, Miami, FL, USA
- Sylvester Comprehensive Cancer Center, University of Miami, Miami, FL, USA
| | - Victor Sandoval
- Hospital Valentin Gomez Farias, Universidad de Guadalajara, Guadalajara, Mexico
| | - Sheetal Malpani
- Department of Pathology, Miller School of Medicine, University of Miami, Miami, FL, USA
| | - Ahmed Noman
- Dow University of Health Sciences, Karachi, Sindh, Pakistan
| | - Farhan Ismael
- Department of Pathology and Laboratory Medicine, The University of Kansas Medical Center, Kansas city, KS, USA
| | - Yujie Wang
- Department of Industrial and Systems Engineering, University of Miami, Miami, FL, USA
| | - Rehana Qureshi
- Department of Pathology, Miller School of Medicine, University of Miami, Miami, FL, USA
| | - Joshua M Hare
- Department of Medicine, Miller School of Medicine, University of Miami, Miami, FL, USA
- Department of Medicine, Cardiology Division, Miller School of Medicine, University of Miami, Miami, FL, USA
- The Interdisciplinary Stem Cell Institute, Miller School of Medicine, University of Miami, Miami, FL, USA
| | - Himanshu Arora
- John P Hussman Institute for Human Genomics, Miller School of Medicine, University of Miami, Miami, FL, USA.
- Desai & Sethi Institute of Urology, Miller School of Medicine, University of Miami, Miami, FL, USA.
- Sylvester Comprehensive Cancer Center, University of Miami, Miami, FL, USA.
- The Interdisciplinary Stem Cell Institute, Miller School of Medicine, University of Miami, Miami, FL, USA.
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Aragão MVC, Afonso AG, Ferraz RC, Ferreira RG, Leite SG, de Figueiredo FAP, Mafra SB. A practical evaluation of AutoML tools for binary, multiclass, and multilabel classification. Sci Rep 2025; 15:17682. [PMID: 40399394 DOI: 10.1038/s41598-025-02149-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2025] [Accepted: 05/12/2025] [Indexed: 05/23/2025] Open
Abstract
Selecting the most suitable Automated Machine Learning (AutoML) tool is pivotal for achieving optimal performance in diverse classification tasks, including binary, multiclass, and multilabel scenarios. The wide range of frameworks with distinct features and capabilities complicates this decision, necessitating a systematic evaluation. This study benchmarks sixteen AutoML tools, including AutoGluon, AutoSklearn, TPOT, PyCaret, and Lightwood, across all three classification types using 21 real-world datasets. Unlike prior studies focusing on a subset of classification tasks or a limited number of tools, we provide a unified evaluation of sixteen frameworks, incorporating feature-based comparisons, time-constrained experiments, and multi-tier statistical validation. We also compared our findings with four representative prior benchmarks to contextualize our results within the existing literature. A key contribution of our study is the in-depth assessment of multilabel classification, exploring both native and label-powerset representations and revealing that several tools lack robust multilabel capabilities. Our findings demonstrate that AutoSklearn excels in predictive performance for binary and multiclass settings, albeit at longer training times, while Lightwood and AutoKeras offer faster training at the cost of predictive performance on complex datasets. AutoGluon emerges as the best overall solution, balancing predictive accuracy with computational efficiency. Our statistical analysis-at per-dataset, across-datasets, and all-datasets levels-confirms significant performance differences among tools, highlighting accuracy-speed trade-offs in AutoML. These insights underscore the importance of aligning tool selection with specific problem characteristics and resource constraints. The open-source code and reproducible experimental protocols further ensure the study's value as a robust resource for researchers and practitioners.
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Affiliation(s)
- Marcelo V C Aragão
- National Institute of Telecommunications (Inatel), Santa Rita do Sapucaí, MG, 37536-001, Brazil.
| | - Augusto G Afonso
- National Institute of Telecommunications (Inatel), Santa Rita do Sapucaí, MG, 37536-001, Brazil
| | - Rafaela C Ferraz
- National Institute of Telecommunications (Inatel), Santa Rita do Sapucaí, MG, 37536-001, Brazil
| | - Rairon G Ferreira
- National Institute of Telecommunications (Inatel), Santa Rita do Sapucaí, MG, 37536-001, Brazil
| | - Sávio G Leite
- National Institute of Telecommunications (Inatel), Santa Rita do Sapucaí, MG, 37536-001, Brazil
| | | | - Samuel B Mafra
- National Institute of Telecommunications (Inatel), Santa Rita do Sapucaí, MG, 37536-001, Brazil
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5
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Yanping H, Haixia Z, Minmin Y, Nan W, Miaomiao K, Mingming Z. Application of the joint clustering algorithm based on Gaussian kernels and differential privacy in lung cancer identification. Sci Rep 2025; 15:17094. [PMID: 40379735 PMCID: PMC12084312 DOI: 10.1038/s41598-025-01873-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2024] [Accepted: 05/08/2025] [Indexed: 05/19/2025] Open
Abstract
In the age of big data, privacy, particularly medical data privacy, is becoming increasingly important. Differential privacy (DP) has emerged as a key method for safeguarding privacy during data analysis and publishing. Cancer identification and classification play a vital role in early detection and treatment. This paper introduces a novel algorithm, DPFCM_GK, which combines differential privacy with fuzzy c-means (FCM) clustering using a Gaussian kernel function. The algorithm enhances cancer detection while ensuring data privacy. Three publicly available lung cancer datasets, along with a dataset from our hospital, are used to test and demonstrate the effectiveness of DPFCM_GK. The experimental results show that DPFCM_GK achieves high clustering accuracy and enhanced privacy as the privacy budget (ε) increases. For the UCIML, NLST, and NSCLC datasets, it reaches optimal results at lower ε (1.52, 1.24, and 2.32) compared to DPFCM. In the lung cancer dataset, DPFCM_GK outperforms DPFCM within, 0.05 ≤ ε ≤ 2.5, with significant differences (χ2 = 4.54 ∼ 29.12; P < 0.05), and both methods converge to an accuracy of 94.5% as ε increases. Although differential privacy initially increases iteration counts, DPFCM_GK demonstrates faster convergence and fewer iterations compared to DPFCM, with significant reductions (T= 23.08, 43.47, and 48.93; P<0.05). For the UCIML dataset, DPFCM_GK significantly reduces runtime compared to other models (DPFCM, LDP-SGD, LDP-Fed, LDP-FedSGD, MGM-DPL, LDP-FL) under the same privacy budget. The runtime reduction is statistically significant with T-values of (T = 21.08, 316.24, 102.35, 222.37, 162.23, 159.25; P < 0.05). DPFCM_GK still maintains excellent time efficiency when applied to the NLST and NSCLC datasets(P < 0.05). For the LLCS dataset, For the LLCS dataset, the DPFCM_GK demonstrates significant improvement as the privacy budget increases, especially in low-budget scenarios, where the performance gap is most pronounced (T=4.20, 8.44, 10.92, 3.95, 7.16, 8.51, P < 0.05). These results confirm DPFCM_GK as a practical solution for medical data analysis, balancing accuracy, privacy, and efficiency.
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Affiliation(s)
- Hang Yanping
- Department of Respiratory and Critical Care Medicine, Affiliated Nanjing Gaochun People's Hospital, Jiangsu University, Nanjing, 210000, Jiangsu, China
| | - Zheng Haixia
- Department of Respiratory and Critical Care Medicine, Affiliated Nanjing Gaochun People's Hospital, Jiangsu University, Nanjing, 210000, Jiangsu, China
| | - Yang Minmin
- Department of Respiratory and Critical Care Medicine, Affiliated Nanjing Gaochun People's Hospital, Jiangsu University, Nanjing, 210000, Jiangsu, China
| | - Wang Nan
- Department of Respiratory and Critical Care Medicine, Affiliated Nanjing Gaochun People's Hospital, Jiangsu University, Nanjing, 210000, Jiangsu, China
| | - Kong Miaomiao
- Department of Respiratory and Critical Care Medicine, Affiliated Nanjing Gaochun People's Hospital, Jiangsu University, Nanjing, 210000, Jiangsu, China
| | - Zhao Mingming
- Department of Respiratory and Critical Care Medicine, Affiliated Nanjing Gaochun People's Hospital, Jiangsu University, Nanjing, 210000, Jiangsu, China.
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6
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Li L, Haijun W, Tianyu C, Wenjing W, Zi W, Yibing C. Metabolomics and machine learning identify urine metabolic characteristics and potential biomarkers for severe Mycoplasma pneumoniae pneumonia. Sci Rep 2025; 15:17090. [PMID: 40379752 PMCID: PMC12084370 DOI: 10.1038/s41598-025-01895-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2025] [Accepted: 05/08/2025] [Indexed: 05/19/2025] Open
Abstract
To study the differences in the urine metabolome between pediatric patients with severe Mycoplasma pneumoniae pneumonia (SMPP) and those with general Mycoplasma pneumoniae pneumonia (GMPP) via non-targeted metabolomics method, and potential biomarkers were explored through machine learning (ML) algorithms. The urine metabonomics data of 48 children with SMPP and 85 children with GMPP were collected via high performance liquid chromatography‒mass spectrometry (HPLC-MS/MS). The differential metabolites between the two groups were obtained via principal component analysis (PCA) and partial least squares-discriminant analysis (PLS-DA), and the significant metabolic pathways were screened via enrichment analysis. Potential biomarkers were identified using the random forest algorithm, and their relationships with clinical indicators were subsequently analyzed. A total of 136 significantly differential metabolites were identified in the urine samples from SMPP and GMPP. Of these, 68 metabolites were upregulated, and 68 were downregulated, predominantly belonging to the amino acid group. A total of 6 differential metabolic pathways were enriched, including Galactose metabolism, Pantothenate and CoA biosynthesis, Cysteine and methionine metabolism, Biotin metabolism, Glycine, serine and threonine metabolism, Arginine biosynthesis. Three significant potential biomarkers were identified through machine learning: 3-Hydroxyanthranilic acid (3-HAA), L-Kynurenine, and 16(R)-HETE. The area under the receiver operating characteristic curve (AUC) for this three-metabolite panel was 0.9142. There are great differences in the urine metabolome between SMPP and GMPP children, with multiple metabolic pathways being abnormally expressed. Three metabolites have been identified as potential biomarkers for the early detection of SMPP.
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Affiliation(s)
- Lin Li
- Department of Emergency, Henan Province Engineering Research Center of Diagnosis and Treatment of Pediatric Infection and Critical Care, Children's Hospital Affiliated to Zhengzhou University, Zhengzhou, 450018, China
| | - Wang Haijun
- Department of Emergency, Henan Province Engineering Research Center of Diagnosis and Treatment of Pediatric Infection and Critical Care, Children's Hospital Affiliated to Zhengzhou University, Zhengzhou, 450018, China
| | - Chen Tianyu
- JIUHE Diagnostics Co., Ltd, Zhengzhou, 450016, China
| | - Wang Wenjing
- JIUHE Diagnostics Co., Ltd, Zhengzhou, 450016, China
| | - Wang Zi
- Department of Emergency, Henan Province Engineering Research Center of Diagnosis and Treatment of Pediatric Infection and Critical Care, Children's Hospital Affiliated to Zhengzhou University, Zhengzhou, 450018, China
| | - Cheng Yibing
- Department of Emergency, Henan Province Engineering Research Center of Diagnosis and Treatment of Pediatric Infection and Critical Care, Children's Hospital Affiliated to Zhengzhou University, Zhengzhou, 450018, China.
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7
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Yang J, Zeng S, Cui S, Zheng J, Wang H. Predictive Modeling of Acute Respiratory Distress Syndrome Using Machine Learning: Systematic Review and Meta-Analysis. J Med Internet Res 2025; 27:e66615. [PMID: 40359510 DOI: 10.2196/66615] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2024] [Revised: 02/01/2025] [Accepted: 03/19/2025] [Indexed: 05/15/2025] Open
Abstract
BACKGROUND Acute respiratory distress syndrome (ARDS) is a critical condition commonly encountered in the intensive care unit (ICU), characterized by a high incidence and substantial mortality rate. Early detection and accurate prediction of ARDS can significantly improve patient outcomes. While machine learning (ML) models are increasingly being used for ARDS prediction, there is a lack of consensus on the most effective model or methodology. This study is the first to systematically evaluate the performance of ARDS prediction models based on multiple quantitative data sources. We compare the effectiveness of ML models via a meta-analysis, revealing factors affecting performance and suggesting strategies to enhance generalization and prediction accuracy. OBJECTIVE This study aims to evaluate the performance of existing ARDS prediction models through a systematic review and meta-analysis, using metrics such as area under the receiver operating characteristic curve, sensitivity, specificity, and other relevant indicators. The findings will provide evidence-based insights to support the development of more accurate and effective ARDS prediction tools. METHODS We performed a search across 6 electronic databases for studies developing ML predictive models for ARDS, with a cutoff date of December 29, 2024. The risk of bias in these models was evaluated using the Prediction model Risk of Bias Assessment Tool. Meta-analyses and investigations into heterogeneity were carried out using Meta-DiSc software (version 1.4), developed by the Ramón y Cajal Hospital's Clinical Biostatistics team in Madrid, Spain. Furthermore, sensitivity, subgroup, and meta-regression analyses were used to explore the sources of heterogeneity more comprehensively. RESULTS ML models achieved a pooled area under the receiver operating characteristic curve of 0.7407 for ARDS. The additional metrics were as follows: sensitivity was 0.67 (95% CI 0.66-0.67; P<.001; I²=97.1%), specificity was 0.68 (95% CI 0.67-0.68; P<.001; I²=98.5%), the diagnostic odds ratio was 6.26 (95% CI 4.93-7.94; P<.001; I²=95.3%), the positive likelihood ratio was 2.80 (95% CI 2.46-3.19; P<.001; I²=97.3%), and the negative likelihood ratio was 0.51 (95% CI 0.46-0.57; P<.001; I²=93.6%). CONCLUSIONS This study evaluates prediction models constructed using various ML algorithms, with results showing that ML demonstrates high performance in ARDS prediction. However, many of the existing models still have limitations. During model development, it is essential to focus on model quality, including reducing bias risk, designing appropriate sample sizes, conducting external validation, and ensuring model interpretability. Additionally, challenges such as physician trust and the need for prospective validation must also be addressed. Future research should standardize model development, optimize model performance, and explore how to better integrate predictive models into clinical practice to improve ARDS diagnosis and risk stratification. TRIAL REGISTRATION PROSPERO CRD42024529403; https://www.crd.york.ac.uk/PROSPERO/view/CRD42024529403.
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Affiliation(s)
- Jinxi Yang
- The Second Clinical Medical College, Harbin Medical University, Heilongjiang Province, Harbin, China
| | - Siyao Zeng
- The Second Clinical Medical College, Harbin Medical University, Heilongjiang Province, Harbin, China
| | - Shanpeng Cui
- The Second Clinical Medical College, Harbin Medical University, Heilongjiang Province, Harbin, China
| | - Junbo Zheng
- Department of Critical Care Medicine, The Second Affiliated Hospital of Harbin Medical University, Heilongjiang Province, Harbin, China
| | - Hongliang Wang
- Department of Critical Care Medicine, The Second Affiliated Hospital of Harbin Medical University, Heilongjiang Province, Harbin, China
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Guo C, Gao B, Han X, Zhang T, Tao T, Xia J, Liu H. Interpretable artificial intelligence model for predicting heart failure severity after acute myocardial infarction. BMC Cardiovasc Disord 2025; 25:362. [PMID: 40355836 PMCID: PMC12067671 DOI: 10.1186/s12872-025-04818-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2025] [Accepted: 05/02/2025] [Indexed: 05/15/2025] Open
Abstract
BACKGROUND Heart failure (HF) after acute myocardial infarction (AMI) is a leading cause of mortality and morbidity worldwide. Accurate prediction and early identification of HF severity are crucial for initiating preventive measures and optimizing treatment strategies. This study aimed to develop an interpretable artificial intelligence (AI) model for HF severity prediction using multidimensional clinical data. METHODS This study included data from 1574 AMI patients, including medical history, clinical features, physiological parameters, laboratory test, coronary angiography and echocardiography results. Both deep learning (TabNet, Multi-Layer Perceptron) and machine learning (Random Forest, XGboost) models were employed in constructing model. Additionally, the Shapley Additive Explanation (SHAP) method was used to elucidate clinical factors importance and enhance model interpretability. A web platform ( https://prediction-killip-gby.streamlit.app/ ) was also developed to facilitate clinical application. RESULTS Among the models, TabNet demonstrated the best performance, achieving an AUROC of 0.827 for KILLIP four-class classification and 0.831 for KILLIP binary classification. Key clinical factors such as GRACE score, NT-pro BNP, and TIMI score were highly correlated with KILLIP classification, aligning with established clinical knowledge. CONCLUSIONS By leveraging easily accessible multidimensional data, this model enables accurate early prediction and personalized diagnosis of HF risk and severity following AMI. It supports early clinical intervention and improves patient outcomes, offering significant clinical application value. CLINICAL TRIAL NUMBER Not applicable.
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Affiliation(s)
- Chenglong Guo
- Pulmonary Vascular Disease Center, Beijing Anzhen Hospital, Capital Medical University, Beijing, China
| | - Binyu Gao
- Biological Science & Medical Engineering, Southeast University, Nanjing, 518000, China
- School of Biomedical Engineering, Capital Medical University, Beijing, 100069, China
| | - Xuexue Han
- Department of Cardiology, Xuanwu Hospital, Capital Medical University, Beijing, 100053, China
| | - Tianxing Zhang
- Department of Cardiology, Xuanwu Hospital, Capital Medical University, Beijing, 100053, China
| | - Tianqi Tao
- Department of Geriatrics, The Second Medical Center, National Clinical Research Center for Geriatric Diseases, Chinese PLA General Hospital, Beijing, 100853, China.
| | - Jinggang Xia
- Department of Cardiology, Xuanwu Hospital, Capital Medical University, Beijing, 100053, China.
| | - Honglei Liu
- School of Biomedical Engineering, Capital Medical University, Beijing, 100069, China.
- Beijing Key Laboratory of Fundamental Research on Biomechanics in Clinical Application, Capital Medical University, Beijing, 100069, China.
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9
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Maktabi M, Huber B, Pfeiffer T, Schulz T. Detection of flap malperfusion after microsurgical tissue reconstruction using hyperspectral imaging and machine learning. Sci Rep 2025; 15:15637. [PMID: 40325146 PMCID: PMC12052805 DOI: 10.1038/s41598-025-98874-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2024] [Accepted: 04/15/2025] [Indexed: 05/07/2025] Open
Abstract
Hyperspectral imaging (HSI) has shown significant diagnostic potential for both intra- and postoperative perfusion assessment. The purpose of this study was to combine machine learning and neural networks with HSI to develop a method for detecting flap malperfusion after microsurgical tissue reconstruction. Data records were analysed to assess the occurrence of flap loss after microsurgical procedures. A total of 59 free flaps were recorded, ten of which demonstrated postoperative malperfusion, leading to necrosis. Several supervised classification algorithms were evaluated to differentiate impaired perfusion from healthy tissue via HSI recordings. The best flap classification performance was observed using a convolutional neural network using HSI based perfusion parameters within 72 h after surgery, with an area under the curve of 0.82 ± 0.05, a sensitivity of 70% ± 33%, a specificity of 76% ± 26%, and an F1 score of 68% ± 28%. HSI combined with artificial intelligence approaches in diagnostic tools could significantly improve the detection of postoperative malperfusion and potentially increase flap salvage rates.
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Affiliation(s)
- Marianne Maktabi
- Innovation Center Computer Assisted Surgery (ICCAS), Faculty of Medicine, Leipzig University, 04103, Leipzig, Germany
- Hochschule Anhalt - University of Applied Sciences | Campus Köthen, Bernburger Str. 55, 06366, Köthen, Anhalt, Germany
| | - Benjamin Huber
- Innovation Center Computer Assisted Surgery (ICCAS), Faculty of Medicine, Leipzig University, 04103, Leipzig, Germany
- Hochschule Anhalt - University of Applied Sciences | Campus Köthen, Bernburger Str. 55, 06366, Köthen, Anhalt, Germany
| | - Toni Pfeiffer
- Innovation Center Computer Assisted Surgery (ICCAS), Faculty of Medicine, Leipzig University, 04103, Leipzig, Germany
| | - Torsten Schulz
- Clinic for Orthopedics, Trauma Surgery, and Plastic Surgery, Leipzig University Clinic, Liebigstraße 20, 04103, Leipzig, Germany.
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10
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Xu J, Zhao X, Li F, Xiao Y, Li K. Prediction Models of Medication Adherence in Chronic Disease Patients: Systematic Review and Critical Appraisal. J Clin Nurs 2025; 34:1602-1612. [PMID: 39740141 DOI: 10.1111/jocn.17577] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2023] [Revised: 04/25/2024] [Accepted: 11/19/2024] [Indexed: 01/02/2025]
Abstract
AIMS AND OBJECTIVES To summarise the currently developed risk prediction models for medication adherence in patients with chronic diseases and evaluate their performance and applicability. BACKGROUND Ensuring medication adherence is crucial in effectively managing chronic diseases. Although numerous studies have endeavoured to construct risk prediction models for predicting medication adherence in patients with chronic illnesses, the reliability and practicality of these models remain uncertain. DESIGN Systematic review. METHODS We conducted searches on PubMed, Web of Science, Cochrane, CINAHL, Embase and Medline from inception until 16 July 2023. Two authors independently screened risk prediction models for medication adherence that met the predefined inclusion criteria. The Prediction Model Risk of Bias Assessment Tool (PROBAST) was employed to evaluate both the risk of bias and clinical applicability of the included studies. This systematic review adhered to the 2020 PRISMA checklist. RESULTS The study included a total of 11 risk prediction models from 11 studies. Medication regimen and age were the most common predictors. The use of PROBAST revealed that some essential methodological details were not thoroughly reported in these models. Due to limitations in methodology, all models were rated as having a high-risk for bias. CONCLUSIONS According to PROBAST, the current models for predicting medication adherence in patients with chronic diseases exhibit a high risk of bias. Future research should prioritise enhancing the methodological quality of model development and conducting external validations on existing models. RELEVANCE TO CLINICAL PRACTICE Based on the review findings, recommendations have been provided to refine the construction methodology of prediction models with an aim of identifying high-risk individuals and key factors associated with low medication adherence in chronic diseases. PATIENT OR PUBLIC CONTRIBUTION This systematic review was conducted without patient or public participation.
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Affiliation(s)
- Jingwen Xu
- School of Nursing, Jilin University, Changchun, China
| | - Xinyi Zhao
- School of Nursing, Jilin University, Changchun, China
| | - Fei Li
- Department of Endocrinology, The First Hospital of Jilin University, Changchun, China
| | - Yan Xiao
- School of Nursing, Jilin University, Changchun, China
| | - Kun Li
- School of Nursing, Jilin University, Changchun, China
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11
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Xu Z, Zhang K, Zeng A, Yin Y, Chen K, Wang C, Fang X, Abuduwayiti A, Wang J, Dai J, Jiang G. Identifying GAP43, NMU, and TEX29 as Potential Prognostic Biomarkers for COPD Combined With Lung Cancer Patients Using Machine Learning. J Gene Med 2025; 27:e70020. [PMID: 40394719 DOI: 10.1002/jgm.70020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2025] [Revised: 03/25/2025] [Accepted: 04/20/2025] [Indexed: 05/22/2025] Open
Abstract
Chronic obstructive pulmonary disease (COPD) and lung cancer, frequently comorbid conditions intricately linked through smoking, represent significant global health challenges. COPD is a common comorbidity in nonsmall cell lung cancer (NSCLC) patients and has been shown to negatively impact prognosis. However, the molecular mechanisms underlying the interplay between COPD and lung cancer remain unclear. This study aims to identify differentially expressed genes (DEGs) associated with COPD-related lung cancer and, using various machine learning (ML) algorithms, uncover potential biomarkers for prognosis. We analyzed RNA sequencing data from 41 lung cancer patients (with and without COPD) and identified 61 DEGs, all of which were upregulated in solitary lung cancer compared to COPD-associated cases. Functional enrichment analysis revealed that these genes are involved in biological processes such as granulocyte chemotaxis and smooth muscle contraction and molecular functions including neuropeptide receptor binding. Three ML methods-support vector machine recursive feature elimination (SVM-RFE), least absolute shrinkage and selection operator (LASSO), and random forest-were applied to prioritize key biomarkers. Three genes, GAP43, NMU, and TEX29, were consistently selected across all methods. Further analysis demonstrated significant correlations between these genes and immune cell infiltration, with notable differences in immune cell composition observed in COPD-associated lung cancer. High expression levels of GAP43, NMU, and TEX29 were associated with poor survival outcomes in lung cancer patients, as validated through survival analysis of TCGA database data. Our findings suggest that these genes may serve as diagnostic and prognostic biomarkers for COPD-related lung cancer, thereby providing insights into potential therapeutic targets. Further studies with larger cohorts are required to validate these results and elucidate the underlying molecular mechanisms.
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Affiliation(s)
- Zhilong Xu
- Department of Thoracic Surgery, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai, China
| | - Kaiyao Zhang
- Jinshan Branch of Shanghai Sixth People's Hospital, Shanghai, China
| | - Ao Zeng
- Department of Thoracic Surgery, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai, China
| | - Yanze Yin
- Department of Thoracic Surgery, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai, China
| | - KeYi Chen
- Department of Thoracic Surgery, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai, China
| | - Chao Wang
- Department of Thoracic Surgery, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai, China
| | - Xinyun Fang
- Department of Thoracic Surgery, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai, China
| | - Abudumijiti Abuduwayiti
- Department of Thoracic Surgery, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai, China
| | - JiaRui Wang
- Department of Thoracic Surgery, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai, China
| | - Jie Dai
- Department of Thoracic Surgery, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai, China
| | - Gening Jiang
- Department of Thoracic Surgery, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai, China
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12
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Zhu J, Tao J, Zhang F, Yao J, Chen K, Wang Y, Lu X, Ni B, Zhu M. Machine learning algorithms for predicting malignancy grades of lung adenocarcinoma and guiding treatments: CT radiomics-based comparisons. J Thorac Dis 2025; 17:2423-2440. [PMID: 40400957 PMCID: PMC12090144 DOI: 10.21037/jtd-2025-310] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2025] [Accepted: 04/18/2025] [Indexed: 05/23/2025]
Abstract
Background Lung adenocarcinoma (LUAD) is the most frequently diagnosed subtype of non-small cell lung cancer (NSCLC). Notably, prognosis can vary significantly among LUAD patients with different tumor subtypes. The advent of radiomics and machine learning (ML) technologies enables the development of non-invasive pathology predictive models. We attempted to develop computed tomography (CT) radiomics-based diagnostic models, enhanced by ML, to predict LUAD malignancy grade and guide surgical strategies. Methods In this retrospective analysis, a total of 168 surgical patients with histology-confirmed LUAD were divided into low-risk group (n=93) and intermediate-to-high-risk group (n=75) based on postoperative pathology. The region of interest (ROI) was delineated on the preoperative CT images for all patients, followed by the extraction of radiomic features. Patients were randomly allocated to a training set (n=117) and a testing set (n=51) in a 7:3 ratio. Within the training set, clinical-radiological model (CM) and radiomics model (RM) were developed utilizing patients' clinical characteristics, radiological semantic features, and radiomic features, along with the calculation of Rad scores. After the Rad scores were combined with independent risk factors among clinical-radiological features, logistic regression (LR), decision tree (DT), random forest (RF), extreme gradient boosting (XGBoost), support vector machine (SVM), K-nearest neighbors (KNN), and naïve Bayes model (NBM) were employed to create different comprehensive models (COMs). The optimal model was identified based on the receiver operating characteristic (ROC) curves and the DeLong test. Finally, Shapley additive explanations (SHAP) were utilized to visualize the predictive processes of the models. Results Among the 168 patients enrolled, there were 50 males (29.76%) aged 56 (49.25, 67.00) years and 118 females (70.24%) aged 56.5 (42.00, 64.00) years; Diameter (P<0.001), and consolidation-to-tumor ratio (CTR) ≥0.5 (P=0.002) were identified as independent risk factors for the malignancy degree of LUAD during CM creation. The CM had an area under the ROC curve (AUC) of 0.909 [95% confidence interval (CI): 0.856-0.962] in the training set and 0.920 (95% CI: 0.846-0.994) in the testing set. The RM, comprising seven radiomic features, achieved an AUC of 0.961 (95% CI: 0.926-0.996) in the training set and 0.957 (95% CI: 0.905-1.000) in the testing set. Among models created using various ML algorithms, the XGBoost model was identified as the optimal model. SHAP visualization revealed the model prediction processes and the values of different features. Conclusions We constructed and validated a robust, integrative model leveraging ML and CT radiomics, which amalgamates radiomics, clinical, and radiological attributes to precisely identify LUADs with elevated postoperative pathological grades. This enables doctors to formulate different surgical plans according to the pathology of the patients' tumors before the operation.
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Affiliation(s)
- Jun Zhu
- Department of Thoracic Surgery, the First Affiliated Hospital of Soochow University, Suzhou, China
| | - Jiayu Tao
- Department of Oncology, the First Affiliated Hospital of Soochow University, Suzhou, China
| | - Fengfeng Zhang
- Department of Oncology, the First Affiliated Hospital of Soochow University, Suzhou, China
| | - Jie Yao
- Department of Thoracic Surgery, the First Affiliated Hospital of Soochow University, Suzhou, China
| | - Ke Chen
- Department of Thoracic Surgery, the First Affiliated Hospital of Soochow University, Suzhou, China
| | - Yuxuan Wang
- Department of Thoracic Surgery, the First Affiliated Hospital of Soochow University, Suzhou, China
| | - Xiaochen Lu
- Department of Thoracic Surgery, the First Affiliated Hospital of Soochow University, Suzhou, China
| | - Bin Ni
- Department of Thoracic Surgery, the First Affiliated Hospital of Soochow University, Suzhou, China
| | - Maoshan Zhu
- Department of Thoracic Surgery, Lianyungang Affiliated Hospital of Nanjing University of Chinese Medicine, Lianyungang, China
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Pan BZ, Jiang MJ, Deng LM, Chen J, Dai XP, Wu ZX, Deng ZH, Luo DY, Wang YYJ, Ning D, Xiong GZ, Bi GS. Integration of bulk RNA-seq and scRNA-seq reveals transcriptomic signatures associated with deep vein thrombosis. Front Genet 2025; 16:1551879. [PMID: 40342960 PMCID: PMC12060172 DOI: 10.3389/fgene.2025.1551879] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2025] [Accepted: 04/10/2025] [Indexed: 05/11/2025] Open
Abstract
Background Deep vein thrombosis (DVT) is a prevalent peripheral vascular disease. The intricate and multifaceted nature of the associated mechanisms hinders a comprehensive understanding of disease-relevant targets. This study aimed to identify and examine the most distinctive genes linked to DVT. Methods In this study, the bulk RNA sequencing (bulk RNA-seq) analysis was conducted on whole blood samples from 11 DVT patients and six control groups. Topology analysis was performed using seven protein-protein interaction (PPI) network algorithms. The combination of weighted correlation network analysis (WGCNA) and clinical prediction models was employed to validate hub DEGs. Furthermore, single-cell RNA sequencing (scRNA-seq) was performed on peripheral blood samples from 3 DVT patients and three control groups to probe the cellular localization of target genes. Based on the same methodology as the internal test set, 12 DVT patients and six control groups were collected to construct an external test set and validated using machine learning (ML) algorithms and immunofluorescence (IF). Concurrently, the examination of the pathways in disparate cell populations was conducted on the basis of the CellChat pathway. Results A total of 193 DEGs were identified in the internal test set. Additionally, a total of eight highly characteristic genes (including TLR1, TLR7, TLR8, CXCR4, DDX58, TNFSF10, FCGR1A and CD36) were identified by the PPI network algorithm. In accordance with the WGCNA model, the aforementioned genes were all situated within the blue core module, exhibiting a correlation coefficient of 0.84. The model demonstrated notable disparities in TLR8 (P = 0.018, AUC = 0.847), CXCR4 (P = 0.00088, AUC = 1.000), TNFSF10 (P = 0.00075, AUC = 0.958), and FCGR1A (P = 0.00022, AUC = 0.986). Furthermore, scRNA-seq demonstrated that B cells, T cells and monocytes play an active role in DVT. In the external validation set, CXCR4 was validated as a potential target by the ML algorithm and IF. In the context of the CellChat pathway, it indicated that MIF - (CD74 + CXCR4) plays a potential role. Conclusion The findings of this study indicate that CXCR4 may serve as a potential genetic marker for DVT, with MIF - (CD74 + CXCR4) potentially implicated in the regulatory mechanisms underlying DVT.
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Affiliation(s)
| | | | | | | | | | | | | | | | | | - Dan Ning
- The Second Affiliated Hospital, Department of Vascular Surgery, Hengyang Medical School, University of South China, Hengyang, Hunan, China
| | - Guo-zuo Xiong
- The Second Affiliated Hospital, Department of Vascular Surgery, Hengyang Medical School, University of South China, Hengyang, Hunan, China
| | - Guo-shan Bi
- The Second Affiliated Hospital, Department of Vascular Surgery, Hengyang Medical School, University of South China, Hengyang, Hunan, China
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14
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Akbari A, Maleki M, Kazemzadeh Y, Ranjbar A. Calculation of hydrogen dispersion in cushion gases using machine learning. Sci Rep 2025; 15:13718. [PMID: 40258984 PMCID: PMC12012074 DOI: 10.1038/s41598-025-98613-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2025] [Accepted: 04/14/2025] [Indexed: 04/23/2025] Open
Abstract
Hydrogen storage is a crucial technology for ensuring a sustainable energy transition. Underground Hydrogen Storage (UHS) in depleted hydrocarbon reservoirs, aquifers, and salt caverns provides a viable large-scale solution. However, hydrogen dispersion in cushion gases such as nitrogen (N2), methane (CH4), and carbon dioxide (CO2) lead to contamination, reduced purity, and increased purification costs. Existing experimental and numerical methods for predicting hydrogen dispersion coefficients (KL) are often limited by high costs, lengthy processing times, and insufficient accuracy in dynamic reservoir conditions. This study addresses these challenges by integrating experimental data with advanced machine learning (ML) techniques to model hydrogen dispersion. Various ML models-including Random Forest (RF), Least Squares Boosting (LSBoost), Bayesian Regression, Linear Regression (LR), Artificial Neural Networks (ANNs), and Support Vector Machines (SVMs)-were employed to quantify KL as a function of pressure (P) and displacement velocity (Um). Among these methods, RF outperformed the others, achieving an R2 of 0.9965 for test data and 0.9999 for training data, with RMSE values of 0.023 and 0.001, respectively. The findings highlight the potential of ML-driven approaches in optimizing UHS operations by enhancing predictive accuracy, reducing computational costs, and mitigating hydrogen contamination risks.
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Affiliation(s)
- Ali Akbari
- Department of Petroleum Engineering, Faculty of Petroleum, Gas, and Petrochemical Engineering, Persian Gulf University, Bushehr, Iran.
| | - Mehdi Maleki
- Department of Petroleum Engineering, Faculty of Petroleum, Gas, and Petrochemical Engineering, Persian Gulf University, Bushehr, Iran
| | - Yousef Kazemzadeh
- Department of Petroleum Engineering, Faculty of Petroleum, Gas, and Petrochemical Engineering, Persian Gulf University, Bushehr, Iran
| | - Ali Ranjbar
- Department of Petroleum Engineering, Faculty of Petroleum, Gas, and Petrochemical Engineering, Persian Gulf University, Bushehr, Iran
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15
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Yang X, Yang R, Liu X, Chen Z, Zheng Q. Recent Advances in Artificial Intelligence for Precision Diagnosis and Treatment of Bladder Cancer: A Review. Ann Surg Oncol 2025:10.1245/s10434-025-17228-6. [PMID: 40221553 DOI: 10.1245/s10434-025-17228-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2024] [Accepted: 03/09/2025] [Indexed: 04/14/2025]
Abstract
BACKGROUND Bladder cancer is one of the top ten cancers globally, with its incidence steadily rising in China. Early detection and prognosis risk assessment play a crucial role in guiding subsequent treatment decisions for bladder cancer. However, traditional diagnostic methods such as bladder endoscopy, imaging, or pathology examinations heavily rely on the clinical expertise and experience of clinicians, exhibiting subjectivity and poor reproducibility. MATERIALS AND METHODS With the rise of artificial intelligence, novel approaches, particularly those employing deep learning technology, have shown significant advancements in clinical tasks related to bladder cancer, including tumor detection, molecular subtyping identification, tumor staging and grading, prognosis prediction, and recurrence assessment. RESULTS Artificial intelligence, with its robust data mining capabilities, enhances diagnostic efficiency and reproducibility when assisting clinicians in decision-making, thereby reducing the risks of misdiagnosis and underdiagnosis. This not only helps alleviate the current challenges of talent shortages and uneven distribution of medical resources but also fosters the development of precision medicine. CONCLUSIONS This study provides a comprehensive review of the latest research advances and prospects of artificial intelligence technology in the precise diagnosis and treatment of bladder cancer.
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Affiliation(s)
- Xiangxiang Yang
- Department of Urology, Renmin Hospital of Wuhan University, Wuhan, Hubei, People's Republic of China
- Institute of Urologic Disease, Renmin Hospital of Wuhan University, Wuhan, Hubei, People's Republic of China
| | - Rui Yang
- Department of Urology, Renmin Hospital of Wuhan University, Wuhan, Hubei, People's Republic of China
- Institute of Urologic Disease, Renmin Hospital of Wuhan University, Wuhan, Hubei, People's Republic of China
| | - Xiuheng Liu
- Department of Urology, Renmin Hospital of Wuhan University, Wuhan, Hubei, People's Republic of China
- Institute of Urologic Disease, Renmin Hospital of Wuhan University, Wuhan, Hubei, People's Republic of China
| | - Zhiyuan Chen
- Department of Urology, Renmin Hospital of Wuhan University, Wuhan, Hubei, People's Republic of China.
- Institute of Urologic Disease, Renmin Hospital of Wuhan University, Wuhan, Hubei, People's Republic of China.
| | - Qingyuan Zheng
- Department of Urology, Renmin Hospital of Wuhan University, Wuhan, Hubei, People's Republic of China.
- Institute of Urologic Disease, Renmin Hospital of Wuhan University, Wuhan, Hubei, People's Republic of China.
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Zheng Q, Wu Y, Zhang X, Zhang Y, Zhu Z, Luan B, Zang P, Sun D. Analysis and validation of hub genes for atherosclerosis and AIDS and immune infiltration characteristics based on bioinformatics and machine learning. Sci Rep 2025; 15:12316. [PMID: 40210656 PMCID: PMC11985999 DOI: 10.1038/s41598-025-96907-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2024] [Accepted: 04/01/2025] [Indexed: 04/12/2025] Open
Abstract
Atherosclerosis is the major cause of cardiovascular diseases worldwide, and AIDS linked with chronic inflammation and immune activation, increases atherosclerosis risk. The application of bioinformatics and machine learning to identify hub genes for atherosclerosis and AIDS has yet to be reported. Thus, this study aims to identify the hub genes for atherosclerosis and AIDS. Gene expression profiles were downloaded from the Gene Expression Omnibus database. The Robust Multichip Average was performed for data preprocessing, and the limma package was used for screening differentially expressed genes. Enrichment analysis employed GO and KEGG, protein-protein interaction network was constructed. Hub genes were filtered using topological and machine learning algorithms and validated in external cohorts. Then immune infiltration and correlation analysis of hub genes were constructed. Nomogram, receiver operating curve, and single-sample gene set enrichment analysis were applied to evaluate hub genes. This study identified 48 intersecting genes. Enrichment analyses indicated that these genes are significantly enriched in viral response, inflammatory response, and cytokine signaling pathways. CCR5 and OAS1 were identified as common hub genes in atherosclerosis and AIDS for the first time, highlighting their roles in antiviral immunity, inflammation and immune infiltration. These findings contributed to understanding the shared pathogenesis of Atherosclerosis and AIDS and provided possible potential therapeutic targets for immunomodulatory therapy.
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Affiliation(s)
- Qirui Zheng
- Department of Ultrasound, The People's Hospital of China Medical University, The People's Hospital of Liaoning Province, 33 Wenyi Road, Shenhe District, Shenyang, 110067, China
- Shenyang Clinical Medical Research Center for Ultrasound, The People's Hospital of China Medical University, The People's Hospital of Liaoning Province, Shenyang, 110067, China
| | - Yupeng Wu
- Department of Neurosurgery, The People's Hospital of China Medical University, The People's Hospital of Liaoning Province, 33 Wenyi Road, Shenhe District, Shenyang, 110067, China
- Pan-Vascular Management Center, The People's Hospital of China Medical University, The People's Hospital of Liaoning Province, Shenyang, 110067, China
| | - Xiaojiao Zhang
- Department of Cardiology, The People's Hospital of China Medical University, The People's Hospital of Liaoning Province, Shenyang, 110067, China
| | - Yuzhu Zhang
- Department of Ultrasound, The People's Hospital of China Medical University, The People's Hospital of Liaoning Province, 33 Wenyi Road, Shenhe District, Shenyang, 110067, China
- Shenyang Clinical Medical Research Center for Ultrasound, The People's Hospital of China Medical University, The People's Hospital of Liaoning Province, Shenyang, 110067, China
| | - Zaihan Zhu
- Department of Ultrasound, The People's Hospital of China Medical University, The People's Hospital of Liaoning Province, 33 Wenyi Road, Shenhe District, Shenyang, 110067, China
- Shenyang Clinical Medical Research Center for Ultrasound, The People's Hospital of China Medical University, The People's Hospital of Liaoning Province, Shenyang, 110067, China
| | - Bo Luan
- Department of Cardiology, The People's Hospital of China Medical University, The People's Hospital of Liaoning Province, Shenyang, 110067, China
| | - Peizhuo Zang
- Department of Neurosurgery, The People's Hospital of China Medical University, The People's Hospital of Liaoning Province, 33 Wenyi Road, Shenhe District, Shenyang, 110067, China.
- Pan-Vascular Management Center, The People's Hospital of China Medical University, The People's Hospital of Liaoning Province, Shenyang, 110067, China.
- Liaoning Provincial Key Laboratory of Neurointerventional Therapy and Biomaterials Research and Development, The People's Hospital of China Medical University, The People's Hospital of Liaoning Province, Shenyang, 110067, China.
| | - Dandan Sun
- Department of Ultrasound, The People's Hospital of China Medical University, The People's Hospital of Liaoning Province, 33 Wenyi Road, Shenhe District, Shenyang, 110067, China.
- Shenyang Clinical Medical Research Center for Ultrasound, The People's Hospital of China Medical University, The People's Hospital of Liaoning Province, Shenyang, 110067, China.
- Liaoning Provincial Key Laboratory of Neurointerventional Therapy and Biomaterials Research and Development, The People's Hospital of China Medical University, The People's Hospital of Liaoning Province, Shenyang, 110067, China.
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Zhang H, Zhang L, Long J, Zhang H, Sun X, Zhang S, Sun A, Qiu S, Meng Y, Ding T, Hu C, Xu K. Image quality improvement in head and neck angiography based on dual-energy CT and deep learning. BMC Med Imaging 2025; 25:115. [PMID: 40211222 PMCID: PMC11987473 DOI: 10.1186/s12880-025-01659-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2024] [Accepted: 04/02/2025] [Indexed: 04/12/2025] Open
Abstract
OBJECTIVE Compare the image quality of image reconstructed using deep learning-based image reconstruction (DLIR) and iterative reconstruction algorithms for head and neck dual-energy CT angiography (DECTA). METHODS This prospective study comprised fifty-eight patients with head and neck DECTA. Images reconstructed by four algorithms (120-kVp-like with ASIR-V40%, 50 keV with ASIR-V40%, 50 keV with DLIR-M, 50 keV with DLIR-H) were compared. CT attenuation, image noise, signal-to-noise ratio (SNR) and contrast-to-noise ratio (CNR) were all calculated. Edge rise distance (ERD) and edge-rise slope (ERS) were measured on the right common carotid artery to reflect spatial resolution. Quantitative data are summarized as the mean ± SD. The subjective image quality scores using a 5-point Likert scale were obtained for the following: overall image quality, edge sharpness of vessels, image noise, and artifacts. RESULTS The CT attenuation of all vessels in the 120kVp-like images were lower than the 3 sets of 50 keV images with significant difference (all P < 0.05). In the 50 keV images, both sternocleidomastoid muscle (SCM) and white matter (WM) had a minimum noise in DLIR-H group, and a maximum in ASIR-V40% group with significant difference (all P < 0.001). SNR and CNR in 50 keV images of all vessels had the same results: highest in DLIR-H group and lowest in ASIR-V40% group with significant differences (all P < 0.05). The mean value of ERD showed no significant difference among the four groups (P = 0.082). While the 120kVp-like images had the lowest ERS, which showed statistically significant difference with the other groups (all P < 0.001). In terms of overall image quality, sharpness, and artifacts, the scores of DLIR-M and DLIR-H at 50 keV were not statistically different (all P > 0.05), and were higher than ASIR-V40% at 50 keV images (all P < 0.05), and higher than ASIR-V40% at 120 kVp-like (all P < 0.05). The scores of DLIR-H at 50 keV were highest in terms of noise and average scores. CONCLUSION DLIR is a potential solution for DECTA reconstruction since it can greatly reduce image noise, improving image quality of head and neck DECTA at 50 keV It is worth considering adopting in routine head and neck CTA applications.
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Affiliation(s)
- He Zhang
- Department of Radiology, The Affiliated Hospital of Xuzhou Medical University, Xuzhou, Jiangsu Province, P.R. China
- School of Medical Imaging, Xuzhou Medical University, Xuzhou, Jiangsu Province, P.R. China
- Jiangsu Medical Imaging and Digital Medicine Engineering Research Center, Xuzhou, Jiangsu Province, P.R. China
| | - Lulu Zhang
- Department of Radiology, The Affiliated Hospital of Xuzhou Medical University, Xuzhou, Jiangsu Province, P.R. China
- School of Medical Imaging, Xuzhou Medical University, Xuzhou, Jiangsu Province, P.R. China
- Jiangsu Medical Imaging and Digital Medicine Engineering Research Center, Xuzhou, Jiangsu Province, P.R. China
| | - Juan Long
- Department of Radiology, The Affiliated Hospital of Xuzhou Medical University, Xuzhou, Jiangsu Province, P.R. China
- School of Medical Imaging, Xuzhou Medical University, Xuzhou, Jiangsu Province, P.R. China
- Jiangsu Medical Imaging and Digital Medicine Engineering Research Center, Xuzhou, Jiangsu Province, P.R. China
| | - He Zhang
- Department of Radiology, The Affiliated Hospital of Xuzhou Medical University, Xuzhou, Jiangsu Province, P.R. China
- School of Medical Imaging, Xuzhou Medical University, Xuzhou, Jiangsu Province, P.R. China
- Jiangsu Medical Imaging and Digital Medicine Engineering Research Center, Xuzhou, Jiangsu Province, P.R. China
- Department of Medical Imaging, Xuzhou Medical University Affiliated Jiawang District People's Hospital, Xuzhou, Jiangsu Province, P.R. China
| | - Xiaonan Sun
- Department of Radiology, The Affiliated Hospital of Xuzhou Medical University, Xuzhou, Jiangsu Province, P.R. China
- School of Medical Imaging, Xuzhou Medical University, Xuzhou, Jiangsu Province, P.R. China
- Jiangsu Medical Imaging and Digital Medicine Engineering Research Center, Xuzhou, Jiangsu Province, P.R. China
| | - Shuai Zhang
- CT Imaging Research Center, GE HealthCare China, Shanghai, China
| | - Aiyun Sun
- CT Imaging Research Center, GE HealthCare China, Shanghai, China
| | - Shenman Qiu
- Department of Radiology, The Affiliated Hospital of Xuzhou Medical University, Xuzhou, Jiangsu Province, P.R. China
- School of Medical Imaging, Xuzhou Medical University, Xuzhou, Jiangsu Province, P.R. China
- Jiangsu Medical Imaging and Digital Medicine Engineering Research Center, Xuzhou, Jiangsu Province, P.R. China
| | - Yankai Meng
- Department of Radiology, The Affiliated Hospital of Xuzhou Medical University, Xuzhou, Jiangsu Province, P.R. China.
- School of Medical Imaging, Xuzhou Medical University, Xuzhou, Jiangsu Province, P.R. China.
- Jiangsu Medical Imaging and Digital Medicine Engineering Research Center, Xuzhou, Jiangsu Province, P.R. China.
| | - Tao Ding
- Department of Radiology, The Affiliated Hospital of Xuzhou Medical University, Xuzhou, Jiangsu Province, P.R. China.
- School of Medical Imaging, Xuzhou Medical University, Xuzhou, Jiangsu Province, P.R. China.
- Jiangsu Medical Imaging and Digital Medicine Engineering Research Center, Xuzhou, Jiangsu Province, P.R. China.
| | - Chunfeng Hu
- Department of Radiology, The Affiliated Hospital of Xuzhou Medical University, Xuzhou, Jiangsu Province, P.R. China
- School of Medical Imaging, Xuzhou Medical University, Xuzhou, Jiangsu Province, P.R. China
- Jiangsu Medical Imaging and Digital Medicine Engineering Research Center, Xuzhou, Jiangsu Province, P.R. China
| | - Kai Xu
- Department of Radiology, The Affiliated Hospital of Xuzhou Medical University, Xuzhou, Jiangsu Province, P.R. China
- School of Medical Imaging, Xuzhou Medical University, Xuzhou, Jiangsu Province, P.R. China
- Jiangsu Medical Imaging and Digital Medicine Engineering Research Center, Xuzhou, Jiangsu Province, P.R. China
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Han GR, Goncharov A, Eryilmaz M, Ye S, Palanisamy B, Ghosh R, Lisi F, Rogers E, Guzman D, Yigci D, Tasoglu S, Di Carlo D, Goda K, McKendry RA, Ozcan A. Machine learning in point-of-care testing: innovations, challenges, and opportunities. Nat Commun 2025; 16:3165. [PMID: 40175414 PMCID: PMC11965387 DOI: 10.1038/s41467-025-58527-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2024] [Accepted: 03/25/2025] [Indexed: 04/04/2025] Open
Abstract
The landscape of diagnostic testing is undergoing a significant transformation, driven by the integration of artificial intelligence (AI) and machine learning (ML) into decentralized, rapid, and accessible sensor platforms for point-of-care testing (POCT). The COVID-19 pandemic has accelerated the shift from centralized laboratory testing but also catalyzed the development of next-generation POCT platforms that leverage ML to enhance the accuracy, sensitivity, and overall efficiency of point-of-care sensors. This Perspective explores how ML is being embedded into various POCT modalities, including lateral flow assays, vertical flow assays, nucleic acid amplification tests, and imaging-based sensors, illustrating their impact through different applications. We also discuss several challenges, such as regulatory hurdles, reliability, and privacy concerns, that must be overcome for the widespread adoption of ML-enhanced POCT in clinical settings and provide a comprehensive overview of the current state of ML-driven POCT technologies, highlighting their potential impact in the future of healthcare.
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Affiliation(s)
- Gyeo-Re Han
- Electrical & Computer Engineering Department, University of California, Los Angeles, CA, USA
| | - Artem Goncharov
- Electrical & Computer Engineering Department, University of California, Los Angeles, CA, USA
| | - Merve Eryilmaz
- Electrical & Computer Engineering Department, University of California, Los Angeles, CA, USA
- Bioengineering Department, University of California, Los Angeles, CA, USA
| | - Shun Ye
- Bioengineering Department, University of California, Los Angeles, CA, USA
- California NanoSystems Institute (CNSI), University of California, Los Angeles, CA, USA
| | - Barath Palanisamy
- Bioengineering Department, University of California, Los Angeles, CA, USA
- California NanoSystems Institute (CNSI), University of California, Los Angeles, CA, USA
| | - Rajesh Ghosh
- Bioengineering Department, University of California, Los Angeles, CA, USA
- California NanoSystems Institute (CNSI), University of California, Los Angeles, CA, USA
| | - Fabio Lisi
- Department of Chemistry, The University of Tokyo, Tokyo, Japan
| | - Elliott Rogers
- London Centre for Nanotechnology and Division of Medicine, University College London, London, UK
| | - David Guzman
- London Centre for Nanotechnology and Division of Medicine, University College London, London, UK
| | - Defne Yigci
- Department of Mechanical Engineering, Koç University, Istanbul, Türkiye
| | - Savas Tasoglu
- Department of Mechanical Engineering, Koç University, Istanbul, Türkiye
- Koç University Translational Medicine Research Center (KUTTAM), Koç University, Istanbul, Türkiye
- Physical Intelligence Department, Max Planck Institute for Intelligent Systems, Stuttgart, Germany
| | - Dino Di Carlo
- Bioengineering Department, University of California, Los Angeles, CA, USA
- California NanoSystems Institute (CNSI), University of California, Los Angeles, CA, USA
| | - Keisuke Goda
- Department of Chemistry, The University of Tokyo, Tokyo, Japan
| | - Rachel A McKendry
- London Centre for Nanotechnology and Division of Medicine, University College London, London, UK
| | - Aydogan Ozcan
- Electrical & Computer Engineering Department, University of California, Los Angeles, CA, USA.
- Bioengineering Department, University of California, Los Angeles, CA, USA.
- California NanoSystems Institute (CNSI), University of California, Los Angeles, CA, USA.
- Department of Surgery, University of California, Los Angeles, CA, USA.
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Hadar PN, Moura LMVR. Clinical Applications of Artificial Intelligence in Neurology Practice. Continuum (Minneap Minn) 2025; 31:583-600. [PMID: 40179410 DOI: 10.1212/con.0000000000001552] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/05/2025]
Abstract
ABSTRACT As artificial intelligence (AI) tools become increasingly mainstream, they can potentially transform neurology clinical practice by improving patient care and reducing clinician workload. However, with these promises also come perils, and neurologists must understand AI as it becomes integrated into health care. This article presents a brief background on AI and explores some of the potential applications in health care and neurology clinical practice with a focus on improving diagnostic testing, documentation, and clinical workflows and highlighting opportunities to address long-standing human biases and challenges and potential mitigation strategies.
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Wang X, Xia Q, Yang S, Deng C, Gu N, Shen Y, Wang Z, Shi B, Zhao R. Machine Learning-Based Immuno-Inflammatory Index Integrating Clinical Characteristics for Predicting Coronary Artery Plaque Rupture. Immun Inflamm Dis 2025; 13:e70162. [PMID: 40192067 PMCID: PMC11973732 DOI: 10.1002/iid3.70162] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2024] [Revised: 02/05/2025] [Accepted: 02/16/2025] [Indexed: 04/10/2025] Open
Abstract
BACKGROUND Coronary artery plaque rupture (PR) is closely associated with immune-inflammatory responses. The systemic inflammatory index (SII) and the systemic inflammatory response index (SIRI) have shown potential in predicting the occurrence of PR. OBJECTIVE This study aims to establish a machine learning (ML) model that integrates baseline patient characteristics, SII, and SIRI to predict PR. The goal is to identify high-risk PR patients before intravascular imaging examinations. METHODS We included 337 patients with acute coronary syndrome who underwent emergency percutaneous coronary intervention and coronary optical coherence tomography (OCT) at the Affiliated Hospital of Zunyi Medical University, China, from May 2023 to October 2023. PR was determined by OCT images. Through manual feature selection, nine features, including SII and SIRI, were included, and an ML model was built using the XGBoost algorithm. Model performance was evaluated using receiver operating characteristic curves and calibration curves. SHAP values were used to assess the contribution of each feature to the model. RESULTS The ML model demonstrated a higher area under the curve value (AUC = 0.81) compared to using SII or SIRI alone for prediction. The ML model also showed good calibration. SHAP values revealed that the top three features in the ML model were SII, LDL-C, and SIRI. CONCLUSION The immuno-inflammatory index, which integrates comprehensive clinical characteristics, can predict the occurrence of PR. However, large-scale, multicenter studies are needed to confirm the generalizability of the predictive model.
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Affiliation(s)
- Xi Wang
- Department of CardiologyAffiliated Hospital of Zunyi Medical UniversityZunyiChina
| | - Qianhang Xia
- Department of CardiologyAffiliated Hospital of Zunyi Medical UniversityZunyiChina
- Department of CardiologyThe Third Affiliated Hospital of Zunyi Medical University (The First Peoples Hospital of Zunyi)ZunyiChina
| | - Shuangya Yang
- Department of CardiologyAffiliated Hospital of Zunyi Medical UniversityZunyiChina
| | - Chancui Deng
- Department of CardiologyAffiliated Hospital of Zunyi Medical UniversityZunyiChina
| | - Ning Gu
- Department of CardiologyAffiliated Hospital of Zunyi Medical UniversityZunyiChina
| | - Youcheng Shen
- Department of CardiologyAffiliated Hospital of Zunyi Medical UniversityZunyiChina
| | - Zhenglong Wang
- Department of CardiologyThe Third Affiliated Hospital of Zunyi Medical University (The First Peoples Hospital of Zunyi)ZunyiChina
| | - Bei Shi
- Department of CardiologyAffiliated Hospital of Zunyi Medical UniversityZunyiChina
| | - Ranzun Zhao
- Department of CardiologyAffiliated Hospital of Zunyi Medical UniversityZunyiChina
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Chen K, Wang C, Wei Y, Ma S, Huang W, Dong Y, Wang Y. Machine learning and population pharmacokinetics: a hybrid approach for optimizing vancomycin therapy in sepsis patients. Microbiol Spectr 2025; 13:e0049925. [PMID: 40162774 PMCID: PMC12054080 DOI: 10.1128/spectrum.00499-25] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2025] [Accepted: 03/11/2025] [Indexed: 04/02/2025] Open
Abstract
Predicting vancomycin exposure is essential for optimizing dosing regimens in sepsis patients. While population pharmacokinetic (PPK) models are commonly used, their performance is limited. Machine learning (ML) models offer advantages over PPK models, but it remains unclear which model-PPK, Bayesian, ML, or hybrid PPK-ML-is best for predicting vancomycin exposure across different clinical scenarios in sepsis patients. This study compares the performance of these models in predicting the 24 hour area under the blood concentration curve (AUC24) to support precision dosing in sepsis care. Data from sepsis patients treated with intravenous vancomycin were sourced from the MIMIC-IV database. The data set was split into training and testing sets, and four models-PPK, Bayesian, ML, and hybrid-were developed. In the testing set, AUC24 was predicted using all models, and performance was evaluated using mean absolute error, mean squared error, root mean squared error, mean absolute percentage error (MAPE), and R². A total of 4,059 patients were included. In the absence of vancomycin concentration data, the hybrid model outperformed both PPK and Bayesian models, with MAPE improvements of 58% and 17%, respectively. When vancomycin concentration data were available, the Bayesian model demonstrated the best performance (MAPE: 13.37% vs 68.17%, 34.17%, and 28.52% for PPK, Random Forest, and hybrid models). The hybrid model is recommended to predict AUC24 when concentration data were unavailable, while the Bayesian model should be used when concentrations were available, offering robust strategies for precise vancomycin dosing in sepsis patients. IMPORTANCE This study evaluates and compares the performance of four models-PPK, Bayesian, ML, and hybrid PPK-ML-in predicting vancomycin exposure (AUC24) in sepsis patients using real-world data from the MIMIC-IV database. These results underscore the importance of selecting appropriate models based on the availability of concentration data, providing valuable guidance for precision dosing strategies in sepsis care. This work contributes to advancing personalized vancomycin therapy, optimizing dosing regimens, and improving clinical outcomes in sepsis patients.
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Affiliation(s)
- Keyu Chen
- Department of Pharmacy, The First Affiliated Hospital of Xi’an Jiaotong University, Xi’an, China
| | - Chuhui Wang
- Department of Pharmacy, The First Affiliated Hospital of Xi’an Jiaotong University, Xi’an, China
| | - Yu Wei
- Department of Pharmacy, The First Affiliated Hospital of Xi’an Jiaotong University, Xi’an, China
| | - Sinan Ma
- Department of Pharmacy, The Second Affiliated Hospital of Xi’an Jiaotong University, Xi’an, China
| | - Weijia Huang
- Department of Pharmacy, The Second Affiliated Hospital of Xi’an Jiaotong University, Xi’an, China
| | - Yalin Dong
- Department of Pharmacy, The First Affiliated Hospital of Xi’an Jiaotong University, Xi’an, China
| | - Yan Wang
- Department of Pharmacy, The Second Affiliated Hospital of Xi’an Jiaotong University, Xi’an, China
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22
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Lu B, Shi Y, Wang M, Jin C, Liu C, Pan X, Chen X. Development of a clinical prediction model for poor treatment outcomes in the intensive phase in patients with initial treatment of pulmonary tuberculosis. Front Med (Lausanne) 2025; 12:1472295. [PMID: 40206468 PMCID: PMC11978639 DOI: 10.3389/fmed.2025.1472295] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2024] [Accepted: 03/11/2025] [Indexed: 04/11/2025] Open
Abstract
Background A prediction model is hereby developed to identify poor treatment outcomes during the intensive phase in patients with initial treatment of pulmonary tuberculosis (TB). Methods The data of inpatients with pulmonary TB were collected from a tertiary hospital located in Southeastern China from July 2019 to December 2023. The included patients were divided into the modeling group and the validation group. The outcome indicator was based on a comparison of pulmonary CT findings before and after the two-month intensive phase of anti-TB treatment. In the modeling group, the independent risk factors of pulmonary TB patients were obtained through logistic regression analysis and then a prediction model was established. The discriminative ability (the area under the curve of the receiver operating characteristic, AUC), its calibration (GiViTI calibration chart), and its clinical applicability (decision curve analysis, DCA) were respectively evaluated. In addition, the prediction effectiveness was compared with that of the machine learning model. Results A total of 1,625 patients were included in this study, and 343 patients had poor treatment outcomes in the intensive phase of anti-TB treatment. Logistic regression analysis identified several independent risk factors for poor treatment outcomes, including diabetes, cavities in the lungs, tracheobronchial TB, increased C-reactive protein, and decreased hemoglobin. The AUC values were 0.815 for the modeling group and 0.851 for the validation group. In the machine learning models, the AUC values of the random forest model and the integrated model were 0.821 and 0.835, respectively. Conclusion The prediction model established in this study presents good performance in predicting poor treatment outcomes during the intensive phase in patients with pulmonary TB.
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Affiliation(s)
- Bin Lu
- Department of Infectious Diseases, Affiliated Dongyang Hospital of Wenzhou Medical University, Dongyang, Zhejiang, China
| | - Yunzhen Shi
- Department of Infectious Diseases, Affiliated Dongyang Hospital of Wenzhou Medical University, Dongyang, Zhejiang, China
| | - Mengqi Wang
- Department of Neurology, Affiliated Dongyang Hospital of Wenzhou Medical University, Dongyang, Zhejiang, China
| | - Chenyuan Jin
- Department of Infectious Diseases, Affiliated Dongyang Hospital of Wenzhou Medical University, Dongyang, Zhejiang, China
| | - Chenxin Liu
- Department of Infectious Diseases, Affiliated Dongyang Hospital of Wenzhou Medical University, Dongyang, Zhejiang, China
| | - Xinling Pan
- Department of Biomedical Sciences Laboratory, Affiliated Dongyang Hospital of Wenzhou Medical University, Dongyang, Zhejiang, China
| | - Xiang Chen
- Department of Biomedical Sciences Laboratory, Affiliated Dongyang Hospital of Wenzhou Medical University, Dongyang, Zhejiang, China
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Sekkat H, Khallouqi A, Rhazouani OE, Halimi A. Automated Detection of Hydrocephalus in Pediatric Head Computed Tomography Using VGG 16 CNN Deep Learning Architecture and Based Automated Segmentation Workflow for Ventricular Volume Estimation. JOURNAL OF IMAGING INFORMATICS IN MEDICINE 2025:10.1007/s10278-025-01482-x. [PMID: 40108068 DOI: 10.1007/s10278-025-01482-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/30/2024] [Revised: 02/23/2025] [Accepted: 03/11/2025] [Indexed: 03/22/2025]
Abstract
Hydrocephalus, particularly congenital hydrocephalus in infants, remains underexplored in deep learning research. While deep learning has been widely applied to medical image analysis, few studies have specifically addressed the automated classification of hydrocephalus. This study proposes a convolutional neural network (CNN) model based on the VGG16 architecture to detect hydrocephalus in infant head CT images. The model integrates an automated method for ventricular volume extraction, applying windowing, histogram equalization, and thresholding techniques to segment the ventricles from surrounding brain structures. Morphological operations refine the segmentation and contours are extracted for visualization and volume measurement. The dataset consists of 105 head CT scans, each with 60 slices covering the ventricular volume, resulting in 6300 slices. Manual segmentation by three trained radiologists served as the reference standard. The automated method showed a high correlation with manual measurements, with R2 values ranging from 0.94 to 0.99. The mean absolute percentage error (MAPE) ranged 3.99 to 11.13%, while the root mean square error (RRMSE) from 4.56 to 13.74%. To improve model robustness, the dataset was preprocessed, normalized, and augmented with rotation, shifting, zooming, and flipping. The VGG16-based CNN used pre-trained convolutional layers with additional fully connected layers for classification, predicting hydrocephalus or normal labels. Performance evaluation using a multi-split strategy (15 independent splits) achieved a mean accuracy of 90.4% ± 1.2%. This study presents an automated approach for ventricular volume extraction and hydrocephalus detection, offering a promising tool for clinical and research applications with high accuracy and reduced observer bias.
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Affiliation(s)
- Hamza Sekkat
- Sciences and Engineering of Biomedicals, Biophysics and Health Laboratory, Higher Institute of Health Sciences, Hassan 1st University, Settat, 26000, Morocco.
- Department of Radiotherapy, International Clinic of Settat, Settat, Morocco.
| | - Abdellah Khallouqi
- Sciences and Engineering of Biomedicals, Biophysics and Health Laboratory, Higher Institute of Health Sciences, Hassan 1st University, Settat, 26000, Morocco
- Department of Radiology, Public Hospital of Mediouna, Mediouna, Morocco
- Department of Radiology, Private Clinic Hay Mouhamadi, Casablanca, Morocco
| | - Omar El Rhazouani
- Sciences and Engineering of Biomedicals, Biophysics and Health Laboratory, Higher Institute of Health Sciences, Hassan 1st University, Settat, 26000, Morocco
| | - Abdellah Halimi
- Sciences and Engineering of Biomedicals, Biophysics and Health Laboratory, Higher Institute of Health Sciences, Hassan 1st University, Settat, 26000, Morocco
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24
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Rawashdeh B, Al-abdallat H, Arpali E, Thomas B, Dunn TB, Cooper M. Machine learning in solid organ transplantation: Charting the evolving landscape. World J Transplant 2025; 15:99642. [PMID: 40104197 PMCID: PMC11612896 DOI: 10.5500/wjt.v15.i1.99642] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/26/2024] [Revised: 10/17/2024] [Accepted: 11/06/2024] [Indexed: 11/26/2024] Open
Abstract
BACKGROUND Machine learning (ML), a major branch of artificial intelligence, has not only demonstrated the potential to significantly improve numerous sectors of healthcare but has also made significant contributions to the field of solid organ transplantation. ML provides revolutionary opportunities in areas such as donor-recipient matching, post-transplant monitoring, and patient care by automatically analyzing large amounts of data, identifying patterns, and forecasting outcomes. AIM To conduct a comprehensive bibliometric analysis of publications on the use of ML in transplantation to understand current research trends and their implications. METHODS On July 18, a thorough search strategy was used with the Web of Science database. ML and transplantation-related keywords were utilized. With the aid of the VOS viewer application, the identified articles were subjected to bibliometric variable analysis in order to determine publication counts, citation counts, contributing countries, and institutions, among other factors. RESULTS Of the 529 articles that were first identified, 427 were deemed relevant for bibliometric analysis. A surge in publications was observed over the last four years, especially after 2018, signifying growing interest in this area. With 209 publications, the United States emerged as the top contributor. Notably, the "Journal of Heart and Lung Transplantation" and the "American Journal of Transplantation" emerged as the leading journals, publishing the highest number of relevant articles. Frequent keyword searches revealed that patient survival, mortality, outcomes, allocation, and risk assessment were significant themes of focus. CONCLUSION The growing body of pertinent publications highlights ML's growing presence in the field of solid organ transplantation. This bibliometric analysis highlights the growing importance of ML in transplant research and highlights its exciting potential to change medical practices and enhance patient outcomes. Encouraging collaboration between significant contributors can potentially fast-track advancements in this interdisciplinary domain.
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Affiliation(s)
- Badi Rawashdeh
- Division of Transplant Surgery, Medical College of Wisconsin, Milwaukee, WI 53202, United States
| | | | - Emre Arpali
- Division of Transplant Surgery, Medical College of Wisconsin, Milwaukee, WI 53202, United States
| | - Beje Thomas
- Department of Nephrology, Medical College of Wisconsin, Milwaukee, WI 53226, United States
| | - Ty B Dunn
- Division of Transplant Surgery, Medical College of Wisconsin, Milwaukee, WI 53202, United States
| | - Matthew Cooper
- Division of Transplant Surgery, Medical College of Wisconsin, Milwaukee, WI 53202, United States
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dos Santos RR, Marumo MB, Eckeli AL, Salgado HC, Silva LEV, Tinós R, Fazan R. The use of heart rate variability, oxygen saturation, and anthropometric data with machine learning to predict the presence and severity of obstructive sleep apnea. Front Cardiovasc Med 2025; 12:1389402. [PMID: 40161388 PMCID: PMC11949982 DOI: 10.3389/fcvm.2025.1389402] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2024] [Accepted: 03/03/2025] [Indexed: 04/02/2025] Open
Abstract
Introduction Obstructive sleep apnea (OSA) is a prevalent sleep disorder with a high rate of undiagnosed patients, primarily due to the complexity of its diagnosis made by polysomnography (PSG). Considering the severe comorbidities associated with OSA, especially in the cardiovascular system, the development of early screening tools for this disease is imperative. Heart rate variability (HRV) is a simple and non-invasive approach used as a probe to evaluate cardiac autonomic modulation, with a variety of newly developed indices lacking studies with OSA patients. Objectives We aimed to evaluate numerous HRV indices, derived from linear but mainly nonlinear indices, combined or not with oxygen saturation indices, for detecting the presence and severity of OSA using machine learning models. Methods ECG waveforms were collected from 291 PSG recordings to calculate 34 HRV indices. Minimum oxygen saturation value during sleep (SatMin), the percentage of total sleep time the patient spent with oxygen saturation below 90% (T90), and patient anthropometric data were also considered as inputs to the models. The Apnea-Hypopnea Index (AHI) was used to categorize into severity classes of OSA (normal, mild, moderate, severe) to train multiclass or binary (normal-to-mild and moderate-to-severe) classification models, using the Random Forest (RF) algorithm. Since the OSA severity groups were unbalanced, we used the Synthetic Minority Over-sampling Technique (SMOTE) to oversample the minority classes. Results Multiclass models achieved a mean area under the ROC curve (AUROC) of 0.92 and 0.86 in classifying normal individuals and severe OSA patients, respectively, when using all attributes. When the groups were dichotomized into normal-to-mild OSA vs. moderate-to-severe OSA, an AUROC of 0.83 was obtained. As revealed by RF, the importance of features indicates that all feature modalities (HRV, SpO2, and anthropometric variables) contribute to the top 10 ranks. Conclusion The present study demonstrates the feasibility of using classification models to detect the presence and severity of OSA using these indices. Our findings have the potential to contribute to the development of rapid screening tools aimed at assisting individuals affected by this condition, to expedite diagnosis and initiate timely treatment.
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Affiliation(s)
- Rafael Rodrigues dos Santos
- Department of Physiology, School of Medicine of Ribeirao Preto, University of Sao Paulo, Ribeirão Preto, Brazil
| | - Matheo Bellini Marumo
- Department of Computing and Mathematics, Faculty of Philosophy, Sciences and Letters, University of Sao Paulo, Ribeirão Preto, Brazil
| | - Alan Luiz Eckeli
- Department of Neuroscience and Behavior Sciences, Division of Neurology, School of Medicine of Ribeirao Preto, University of Sao Paulo, Ribeirão Preto, Brazil
| | - Helio Cesar Salgado
- Department of Physiology, School of Medicine of Ribeirao Preto, University of Sao Paulo, Ribeirão Preto, Brazil
| | - Luiz Eduardo Virgílio Silva
- Department of Biomedical and Health Informatics, Children’s Hospital of Philadelphia, Philadelphia, PA, United States
| | - Renato Tinós
- Department of Computing and Mathematics, Faculty of Philosophy, Sciences and Letters, University of Sao Paulo, Ribeirão Preto, Brazil
| | - Rubens Fazan
- Department of Physiology, School of Medicine of Ribeirao Preto, University of Sao Paulo, Ribeirão Preto, Brazil
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Wei S, Guo X, He S, Zhang C, Chen Z, Chen J, Huang Y, Zhang F, Liu Q. Application of Machine Learning for Patients With Cardiac Arrest: Systematic Review and Meta-Analysis. J Med Internet Res 2025; 27:e67871. [PMID: 40063076 PMCID: PMC11933771 DOI: 10.2196/67871] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2024] [Revised: 12/19/2024] [Accepted: 01/16/2025] [Indexed: 03/27/2025] Open
Abstract
BACKGROUND Currently, there is a lack of effective early assessment tools for predicting the onset and development of cardiac arrest (CA). With the increasing attention of clinical researchers on machine learning (ML), some researchers have developed ML models for predicting the occurrence and prognosis of CA, with certain models appearing to outperform traditional scoring tools. However, these models still lack systematic evidence to substantiate their efficacy. OBJECTIVE This systematic review and meta-analysis was conducted to evaluate the prediction value of ML in CA for occurrence, good neurological prognosis, mortality, and the return of spontaneous circulation (ROSC), thereby providing evidence-based support for the development and refinement of applicable clinical tools. METHODS PubMed, Embase, the Cochrane Library, and Web of Science were systematically searched from their establishment until May 17, 2024. The risk of bias in all prediction models was assessed using the Prediction Model Risk of Bias Assessment Tool. RESULTS In total, 93 studies were selected, encompassing 5,729,721 in-hospital and out-of-hospital patients. The meta-analysis revealed that, for predicting CA, the pooled C-index, sensitivity, and specificity derived from the imbalanced validation dataset were 0.90 (95% CI 0.87-0.93), 0.83 (95% CI 0.79-0.87), and 0.93 (95% CI 0.88-0.96), respectively. On the basis of the balanced validation dataset, the pooled C-index, sensitivity, and specificity were 0.88 (95% CI 0.86-0.90), 0.72 (95% CI 0.49-0.95), and 0.79 (95% CI 0.68-0.91), respectively. For predicting the good cerebral performance category score 1 to 2, the pooled C-index, sensitivity, and specificity based on the validation dataset were 0.86 (95% CI 0.85-0.87), 0.72 (95% CI 0.61-0.81), and 0.79 (95% CI 0.66-0.88), respectively. For predicting CA mortality, the pooled C-index, sensitivity, and specificity based on the validation dataset were 0.85 (95% CI 0.82-0.87), 0.83 (95% CI 0.79-0.87), and 0.79 (95% CI 0.74-0.83), respectively. For predicting ROSC, the pooled C-index, sensitivity, and specificity based on the validation dataset were 0.77 (95% CI 0.74-0.80), 0.53 (95% CI 0.31-0.74), and 0.88 (95% CI 0.71-0.96), respectively. In predicting CA, the most significant modeling variables were respiratory rate, blood pressure, age, and temperature. In predicting a good cerebral performance category score 1 to 2, the most significant modeling variables in the in-hospital CA group were rhythm (shockable or nonshockable), age, medication use, and gender; the most significant modeling variables in the out-of-hospital CA group were age, rhythm (shockable or nonshockable), medication use, and ROSC. CONCLUSIONS ML represents a currently promising approach for predicting the occurrence and outcomes of CA. Therefore, in future research on CA, we may attempt to systematically update traditional scoring tools based on the superior performance of ML in specific outcomes, achieving artificial intelligence-driven enhancements. TRIAL REGISTRATION PROSPERO International Prospective Register of Systematic Reviews CRD42024518949; https://www.crd.york.ac.uk/prospero/display_record.php?RecordID=518949.
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Affiliation(s)
- Shengfeng Wei
- Department of Emergency Medicine, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, China
| | - Xiangjian Guo
- Department of Emergency Medicine, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, China
| | - Shilin He
- Department of Emergency Medicine, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, China
| | - Chunhua Zhang
- Department of Emergency Medicine, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, China
| | - Zhizhuan Chen
- Department of Emergency Medicine, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, China
| | - Jianmei Chen
- Department of Emergency Medicine, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, China
| | - Yanmei Huang
- Department of Emergency Medicine, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, China
| | - Fan Zhang
- Department of Emergency Medicine, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, China
| | - Qiangqiang Liu
- Department of Emergency Medicine, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, China
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Herazo-Álvarez J, Mora M, Cuadros-Orellana S, Vilches-Ponce K, Hernández-García R. A review of neural networks for metagenomic binning. Brief Bioinform 2025; 26:bbaf065. [PMID: 40131312 PMCID: PMC11934572 DOI: 10.1093/bib/bbaf065] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2024] [Revised: 01/02/2025] [Accepted: 03/07/2025] [Indexed: 03/26/2025] Open
Abstract
One of the main goals of metagenomic studies is to describe the taxonomic diversity of microbial communities. A crucial step in metagenomic analysis is metagenomic binning, which involves the (supervised) classification or (unsupervised) clustering of metagenomic sequences. Various machine learning models have been applied to address this task. In this review, the contributions of artificial neural networks (ANN) in the context of metagenomic binning are detailed, addressing both supervised, unsupervised, and semi-supervised approaches. 34 ANN-based binning tools are systematically compared, detailing their architectures, input features, datasets, advantages, disadvantages, and other relevant aspects. The findings reveal that deep learning approaches, such as convolutional neural networks and autoencoders, achieve higher accuracy and scalability than traditional methods. Gaps in benchmarking practices are highlighted, and future directions are proposed, including standardized datasets and optimization of architectures, for third-generation sequencing. This review provides support to researchers in identifying trends and selecting suitable tools for the metagenomic binning problem.
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Affiliation(s)
- Jair Herazo-Álvarez
- Doctorado en Modelamiento Matemático Aplicado, Universidad Católica del Maule, Talca, Maule 3480564, Chile
- Laboratory of Technological Research in Pattern Recognition (LITRP), Universidad Católica del Maule, Talca, Maule 3480564, Chile
| | - Marco Mora
- Laboratory of Technological Research in Pattern Recognition (LITRP), Universidad Católica del Maule, Talca, Maule 3480564, Chile
- Departamento de Computación e Industrias, Facultad de Ciencias de la Ingeniería, Universidad Católica del Maule, Talca, Maule 3480564, Chile
| | - Sara Cuadros-Orellana
- Laboratory of Technological Research in Pattern Recognition (LITRP), Universidad Católica del Maule, Talca, Maule 3480564, Chile
- Centro de Biotecnología de los Recursos Naturales (CENBio), Universidad Católica del Maule, Talca, Maule 3480564, Chile
| | - Karina Vilches-Ponce
- Laboratory of Technological Research in Pattern Recognition (LITRP), Universidad Católica del Maule, Talca, Maule 3480564, Chile
| | - Ruber Hernández-García
- Laboratory of Technological Research in Pattern Recognition (LITRP), Universidad Católica del Maule, Talca, Maule 3480564, Chile
- Departamento de Computación e Industrias, Facultad de Ciencias de la Ingeniería, Universidad Católica del Maule, Talca, Maule 3480564, Chile
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Nabi AE, Pouladvand P, Liu L, Hua N, Ayubcha C. Machine Learning in Drug Development for Neurological Diseases: A Review of Blood Brain Barrier Permeability Prediction Models. Mol Inform 2025; 44:e202400325. [PMID: 40146590 PMCID: PMC11949286 DOI: 10.1002/minf.202400325] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2024] [Revised: 01/25/2025] [Accepted: 02/05/2025] [Indexed: 03/29/2025]
Abstract
The blood brain barrier (BBB) is an endothelial-derived structure which restricts the movement of certain molecules between the general somatic circulatory system to the central nervous system (CNS). While the BBB maintains homeostasis by regulating the molecular environment induced by cerebrovascular perfusion, it also presents significant challenges in developing therapeutics intended to act on CNS targets. Many drug development practices rely partly on extensive cell and animal models to predict, to an extent, whether prospective therapeutic molecules can cross the BBB. In interest to reduce costs and improve prediction accuracy, many propose using advanced computational modeling of BBB permeability profiles leveraging empirical data. Given the scale of growth in machine learning and deep learning, we review the most recent machine learning approaches in predicting BBB permeability.
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Affiliation(s)
- Aryon Eckleel Nabi
- Harvard Medical SchoolDepartment of EpidemiologyHarvard T.H. Chan School of Public HealthBoston, MAUSA
| | - Pedram Pouladvand
- Department of EpidemiologyHarvard Chan School of Public HealthBoston, MAUSA
| | - Litian Liu
- Boonshoft School of MedicineWright State UniversityDayton, OHUSA
| | - Ning Hua
- Department of Electrical Engineering and Computer ScienceMassachusetts Institute of TechnologyBoston, MAUSA
| | - Cyrus Ayubcha
- Harvard Medical SchoolDepartment of EpidemiologyHarvard T.H. Chan School of Public HealthBoston, MAUSA
- Department of Electrical Engineering and Computer ScienceMassachusetts Institute of TechnologyBoston, MAUSA
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29
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Kokori E, Patel R, Olatunji G, Ukoaka BM, Abraham IC, Ajekiigbe VO, Kwape JM, Babalola AE, Udam NG, Aderinto N. Machine learning in predicting heart failure survival: a review of current models and future prospects. Heart Fail Rev 2025; 30:431-442. [PMID: 39656330 DOI: 10.1007/s10741-024-10474-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 12/04/2024] [Indexed: 02/07/2025]
Abstract
Heart failure is a complex and prevalent condition with significant implications for patient management and survival prediction. Traditional predictive models often fall short in accuracy due to their reliance on pre-specified predictors and assumptions of variable independence. This review aims to assess the role of machine learning (ML) algorithms in predicting heart failure survival, comparing their performance with traditional statistical methods and identifying key predictive features. We conducted a review of studies utilizing ML algorithms for heart failure survival prediction. Data were sourced from PubMed/MEDLINE, Google Scholar, ScienceDirect, Embase, DOAJ, and the Cochrane Library, covering studies published until July 2024. A total of 10 studies were reviewed, encompassing 468,171 patients with heart failure. ML algorithms, particularly random forests and gradient boosting methods, demonstrated superior performance compared to traditional statistical models. These algorithms effectively identified key risk factors and stratified patients into risk categories with high accuracy. Notably, extreme learning machine (ELM) and CatBoost models showed exceptional predictive capabilities, as indicated by metrics such as Harrell's concordance index (C-index) and area under the curve (AUC). Key predictive features included ejection fraction (EF), serum creatinine (S Cr), and blood urea nitrogen (BUN). ML algorithms offer significant advantages in predicting heart failure survival by uncovering complex patterns and improving risk stratification. Their integration into clinical practice could lead to more personalized treatment strategies and enhanced patient outcomes. However, challenges such as data quality, model interpretability, and integration into clinical workflows need to be addressed.
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Affiliation(s)
- Emmanuel Kokori
- Department of Medicine and Surgery, University of Ilorin, Ilorin, Nigeria
| | - Ravi Patel
- Department of Internal Medicine, Methodist Health System Dallas, Dallas, TX, USA
| | - Gbolahan Olatunji
- Department of Medicine and Surgery, University of Ilorin, Ilorin, Nigeria
| | | | | | | | | | | | | | - Nicholas Aderinto
- Department of Medicine and Surgery, Ladoke Akintola University of Technology, Ogbomoso, Nigeria.
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Tan F, Dong Y, Qi J, Yu W, Chai R. Artificial Intelligence-Based Approaches for AAV Vector Engineering. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2025; 12:e2411062. [PMID: 39932449 PMCID: PMC11884542 DOI: 10.1002/advs.202411062] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/10/2024] [Revised: 12/31/2024] [Indexed: 03/08/2025]
Abstract
Adeno-associated virus (AAV) has emerged as a leading vector for gene therapy due to its broad host range, low pathogenicity, and ability to facilitate long-term gene expression. However, AAV vectors face limitations, including immunogenicity and insufficient targeting specificity. To enhance the efficacy of gene therapy, researchers have been modifying the AAV vector using various methods. Traditional experimental approaches for optimizing AAV vector are often time-consuming, resource-intensive, and difficult to replicate. The advancement of artificial intelligence (AI), particularly machine learning, offers significant potential to accelerate capsid optimization while reducing development time and manufacturing costs. This review compares traditional and AI-based methods of AAV vector engineering and highlights recent research in AAV engineering using AI algorithms.
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Affiliation(s)
- Fangzhi Tan
- State Key Laboratory of Digital Medical EngineeringDepartment of Otolaryngology Head and Neck SurgeryZhongda HospitalSchool of Life Sciences and TechnologySchool of MedicineAdvanced Institute for Life and HealthJiangsu Province High‐Tech Key Laboratory for Bio‐Medical ResearchSoutheast UniversityNanjing210096China
| | - Yue Dong
- Immunowake, Inc.Shanghai201210China
| | - Jieyu Qi
- Department of NeurologyAerospace Center HospitalSchool of Life ScienceBeijing Institute of TechnologyBeijing100081China
- State Key Laboratory of Hearing and Balance ScienceBeijing Institute of TechnologyBeijing100081China
- School of Medical EngineeringAffiliated Zhuhai People's HospitalBeijing Institute of TechnologyZhuhai519088China
- Advanced Technology Research InstituteBeijing Institute of TechnologyJinan250300China
| | - Wenwu Yu
- School of MathematicsSoutheast UniversityNanjing210096China
| | - Renjie Chai
- State Key Laboratory of Digital Medical EngineeringDepartment of Otolaryngology Head and Neck SurgeryZhongda HospitalSchool of Life Sciences and TechnologySchool of MedicineAdvanced Institute for Life and HealthJiangsu Province High‐Tech Key Laboratory for Bio‐Medical ResearchSoutheast UniversityNanjing210096China
- Department of NeurologyAerospace Center HospitalSchool of Life ScienceBeijing Institute of TechnologyBeijing100081China
- Co‐Innovation Center of NeuroregenerationNantong UniversityNantong226001China
- Department of Otolaryngology Head and Neck SurgerySichuan Provincial People's HospitalSchool of MedicineUniversity of Electronic Science and Technology of ChinaChengdu610072China
- Southeast University Shenzhen Research InstituteShenzhen518063China
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Hilberink L, Wehage P, Pashai Fakhri M, Gaedcke S, DeLuca D, Mattis P, Rademacher J. [Artificial intelligence and machine learning in auscultation: prospects of the project DigitaLung]. Pneumologie 2025; 79:229-235. [PMID: 39961349 DOI: 10.1055/a-2507-1486] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/12/2025]
Abstract
Auscultation is one of the key medical skills in physical examination. The main problem with auscultation is the lack of objectivity of the findings and great dependence on the experience of the examiner. Auscultation using machine learning and neural networks promises great potential for solving these problems in clinical practice.A selective search for studies in PubMed was carried out, which revealed the possibilities of machine learning in medical diagnostics.In all the studies identified, significant differences were shown between the respective test groups in favour of artificial intelligence (AI). In addition to the positive study results, the limitations of AI could also be analysed and critically scrutinised.Medical research in the field of artificial intelligence is still in its infancy. The prospects and limitations of AI must be further investigated and require close attention in the collaboration between clinicians, scientists and AI experts. Publicly funded projects such as DigitaLung (a digital auscultation system for the differential diagnosis of lung diseases using machine learning), which aims to improve lung auscultation using AI, will help to unlock the diagnostic benefits of AI for patient care and could improve care in the future.
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Affiliation(s)
- Luca Hilberink
- Respiratory Medicine and Infectious Diseases, Hannover Medical School, Hannover, Deutschland
| | - Pia Wehage
- Respiratory Medicine and Infectious Diseases, Hannover Medical School, Hannover, Deutschland
| | - Milad Pashai Fakhri
- Respiratory Medicine and Infectious Diseases, Hannover Medical School, Hannover, Deutschland
| | - Svenja Gaedcke
- Biomedical Research in Endstage and Obstructive Lung Disease Hannover (BREATH), German Center for Lung Research (DZL), Hannover Medical School, Hannover, Deutschland
| | - David DeLuca
- Biomedical Research in Endstage and Obstructive Lung Disease Hannover (BREATH), German Center for Lung Research (DZL), Hannover Medical School, Hannover, Deutschland
| | - Patricia Mattis
- Business Development Manager, Translational Biomedical Engineering, Fraunhofer Institute for Toxicology and Experimental Medicine ITEM, Hannover, Deutschland
| | - Jessica Rademacher
- Respiratory Medicine and Infectious Diseases, Hannover Medical School, Hannover, Deutschland
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Nakashima M, Fukui R, Sugimoto S, Iguchi T. Deep learning-based approach for acquisition time reduction in ventilation SPECT in patients after lung transplantation. Radiol Phys Technol 2025; 18:47-57. [PMID: 39441494 DOI: 10.1007/s12194-024-00853-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2024] [Revised: 10/15/2024] [Accepted: 10/16/2024] [Indexed: 10/25/2024]
Abstract
We aimed to evaluate the image quality and diagnostic performance of chronic lung allograft dysfunction (CLAD) with lung ventilation single-photon emission computed tomography (SPECT) images acquired briefly using a convolutional neural network (CNN) in patients after lung transplantation and to explore the feasibility of short acquisition times. We retrospectively identified 93 consecutive lung-transplant recipients who underwent ventilation SPECT/computed tomography (CT). We employed a CNN to distinguish the images acquired in full time from those acquired in a short time. The image quality was evaluated using the structural similarity index (SSIM) loss and normalized mean square error (NMSE). The correlation between functional volume/morphological volume (F/M) ratios of full-time SPECT images and predicted SPECT images was evaluated. Differences in the F/M ratio were evaluated using Bland-Altman plots, and the diagnostic performance was compared using the area under the curve (AUC). The learning curve, obtained using MSE, converged within 100 epochs. The NMSE was significantly lower (P < 0.001) and the SSIM was significantly higher (P < 0.001) for the CNN-predicted SPECT images compared to the short-time SPECT images. The F/M ratio of full-time SPECT images and predicted SPECT images showed a significant correlation (r = 0.955, P < 0.0001). The Bland-Altman plot revealed a bias of -7.90% in the F/M ratio. The AUC values were 0.942 for full-time SPECT images, 0.934 for predicted SPECT images and 0.872 for short-time SPECT images. Our findings suggest that a deep-learning-based approach can significantly curtail the acquisition time of ventilation SPECT, while preserving the image quality and diagnostic accuracy for CLAD.
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Affiliation(s)
- Masahiro Nakashima
- Division of Radiological Technology, Okayama University Hospital, 2-5-1 Shikatacho, Kitaku, Okayama, 700-8558, Japan.
| | - Ryohei Fukui
- Department of Radiological Technology, Faculty of Health Sciences, Okayama University, 2-5-1 Shikatacho, Kitaku, Okayama, 700-8558, Japan
| | - Seiichiro Sugimoto
- Department of General Thoracic Surgery and Breast and Endocrinological Surgery, Dentistry and Pharmaceutical Sciences, Okayama University Graduate School of Medicine, 2-5-1 Shikatacho, Kitaku, Okayama, 700-8558, Japan
| | - Toshihiro Iguchi
- Department of Radiological Technology, Faculty of Health Sciences, Okayama University, 2-5-1 Shikatacho, Kitaku, Okayama, 700-8558, Japan
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Zhuo Z, Zhang N, Ao F, Hua T, Duan Y, Xu X, Weng J, Cao G, Li K, Zhou F, Li H, Li Y, Han X, Haller S, Barkhof F, Hu G, Shi F, Zhang X, Tian D, Liu Y. Spatial structural abnormality maps associated with cognitive and physical performance in relapsing-remitting multiple sclerosis. Eur Radiol 2025; 35:1228-1241. [PMID: 39470796 DOI: 10.1007/s00330-024-11157-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2024] [Revised: 07/21/2024] [Accepted: 09/02/2024] [Indexed: 11/01/2024]
Abstract
OBJECTIVES We aimed to characterize the brain abnormalities that are associated with the cognitive and physical performance of patients with relapsing-remitting multiple sclerosis (RRMS) using a deep learning algorithm. MATERIALS AND METHODS Three-dimensional (3D) nnU-Net was employed to calculate a novel spatial abnormality map by T1-weighted images and 281 RRMS patients (Dataset-1, male/female = 101/180, median age [range] = 35.0 [17.0, 65.0] years) were categorized into subtypes. Comparison of clinical and MRI features between RRMS subtypes was conducted by Kruskal-Wallis test. Kaplan-Meier analysis was conducted to investigate disability progression in RRMS subtypes. Additional validation using two other RRMS datasets (Dataset-2, n = 33 and Dataset-3, n = 56) was conducted. RESULTS Five RRMS subtypes were identified: (1) a Frontal-I subtype showing preserved cognitive performance and mild physical disability, and low risk of disability worsening; (2) a Frontal-II subtype showing low cognitive scores and severe physical disability with significant brain volume loss, and a high propensity for disability worsening; (3) a temporal-cerebellar subtype demonstrating lowest cognitive scores and severest physical disability among all subtypes but remaining relatively stable during follow-up; (4) an occipital subtype demonstrating similar clinical and imaging characteristics as the Frontal-II subtype, except a large number of relapses at baseline and preserved cognitive performance; and (5) a subcortical subtype showing preserved cognitive performance and low physical disability but a similar prognosis as the occipital and Frontal-II subtypes. Additional validation confirmed the above findings. CONCLUSION Spatial abnormality maps can explain heterogeneity in cognitive and physical performance in RRMS and may contribute to stratified management. KEY POINTS Question Can a deep learning algorithm characterize the brain abnormalities associated with the cognitive and physical performance of patients with RRMS? Findings Five RRMS subtypes were identified by the algorithm that demonstrated variable cognitive and physical performance. Clinical relevance The spatial abnormality maps derived RRMS subtypes had distinct cognitive and physical performances, which have a potential for individually tailored management.
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Affiliation(s)
- Zhizheng Zhuo
- Department of Radiology, Beijing Tiantan Hospital, Capital Medical University, Beijing, China.
| | - Ningnannan Zhang
- Department of Radiology and Tianjin Key Laboratory of Functional Imaging, Tianjin Medical University General Hospital, Tianjin, China
| | - Feng Ao
- Department of Radiology, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
- Department of Radiology, Renmin Hospital, Hubei University of Medicine, Shiyan, China
| | - Tiantian Hua
- Department of Radiology, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
| | - Yunyun Duan
- Department of Radiology, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
| | - Xiaolu Xu
- Department of Radiology, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
| | - Jinyuan Weng
- Department of Medical Imaging Product, Neusoft Group Ltd., Shenyang, People's Republic of China
| | - Guanmei Cao
- Department of Radiology, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
| | - Kuncheng Li
- Department of Radiology, Xuanwu Hospital, Capital Medical University, Beijing, China
| | - Fuqing Zhou
- Department of Radiology, The First Affiliated Hospital, Nanchang University, Nanchang, China
| | - Haiqing Li
- Department of Radiology, Huashan Hospital, Fudan University, Shanghai, China
| | - Yongmei Li
- Department of Radiology, The First Affiliated Hospital of Chongqing Medical University, Chongqing, China
| | - Xuemei Han
- Department of Neurology, China-Japan Union Hospital of Jilin University, Changchun, China
| | - Sven Haller
- Department of Imaging and Medical Informatics, University Hospitals of Geneva and Faculty of Medicine of the University of Geneva, Geneva, Switzerland
| | - Frederik Barkhof
- Department of Radiology and Nuclear Medicine, Amsterdam, The Netherlands
- Queen Square Institute of Neurology and Center for Medical Image Computing, University College London, London, UK
| | - Geli Hu
- Clinical and Technical Support, Philips Healthcare, Beijing, China
| | - Fudong Shi
- China National Clinical Research Center for Neurological Diseases, Beijing, China
- Department of Neurology, Tianjin Neurological Institute, Tianjin Medical University General Hospital, Tianjin, China
| | - Xinghu Zhang
- Center for Neurology, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
| | - Decai Tian
- Center for Neurology, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
| | - Yaou Liu
- Department of Radiology, Beijing Tiantan Hospital, Capital Medical University, Beijing, China.
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Sobrinho BP, Silva BP, Andrade KM, Sobrinho BP, Ribeiro DA, Santos JN, Oliveira LR, Cury PR. Intelligent biofilm detection with ensemble of deep learning networks. Med Oral Patol Oral Cir Bucal 2025; 30:e282-e287. [PMID: 39954282 PMCID: PMC11972646 DOI: 10.4317/medoral.26937] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2024] [Accepted: 01/07/2025] [Indexed: 02/17/2025] Open
Abstract
BACKGROUND Dental biofilm is traditionally identified visually, which can be challenging and time-consuming due to its color similarity with the tooth. The aim of this study was to evaluate the performance of U-Net neural networks for the automatic detection of dental biofilm without disclosing agents on intraoral photographs of deciduous and permanent teeth using an ensemble strategy. MATERIAL AND METHODS This retrospective exploratory study was conducted on two datasets of intraoral images obtained from deciduous and permanent dentitions. The first dataset was used to validate dental biofilm annotations by an expert with disclosing agents. The second dataset, without disclosing agents, was employed to train and evaluate the U-Net neural network in the identification of dental biofilms using an ensemble strategy. RESULTS The performance of the ensemble method was assessed using a cross-validation procedure, with six groups dedicated to training, one group for validation, and one group exclusively taken as a test set for the final evaluation of the ensemble. The performance of the neural network was evaluated using accuracy, F1 score, sensitivity, and specificity. The U-Net neural network achieved an accuracy of 93.1%, sensitivity of 65.1%, specificity of 95.9%, and an F1 score of 63.0%. CONCLUSIONS The U-Net neural network using the ensemble strategy was able to automatically identify visually detectable dental biofilms on intraoral photographs. The application of this new knowledge will soon be available in clinical practice.
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Affiliation(s)
- B-P Sobrinho
- Faculdade de Odontologia Avenida Araújo Pinho, 62, Canela 40110-150, Salvador/Bahia, Brazil ;
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Guo Y, Wang F, Ma S, Mao Z, Zhao S, Sui L, Jiao C, Lu R, Zhu X, Pan X. Relationship between atherogenic index of plasma and length of stay in critically ill patients with atherosclerotic cardiovascular disease: a retrospective cohort study and predictive modeling based on machine learning. Cardiovasc Diabetol 2025; 24:95. [PMID: 40022165 PMCID: PMC11871731 DOI: 10.1186/s12933-025-02654-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/13/2025] [Accepted: 02/18/2025] [Indexed: 03/03/2025] Open
Abstract
BACKGROUND The atherogenic index of plasma (AIP) is considered an important marker of atherosclerosis and cardiovascular risk. However, its potential role in predicting length of stay (LOS), especially in patients with atherosclerotic cardiovascular disease (ASCVD), remains to be explored. We investigated the effect of AIP on hospital LOS in critically ill ASCVD patients and explored the risk factors affecting LOS in conjunction with machine learning. METHODS Using data from the Medical Information Mart for Intensive Care (MIMIC)-IV. AIP was calculated as the logarithmic ratio of TG to HDL-C, and patients were stratified into four groups based on AIP values. We investigated the association between AIP and two key clinical outcomes: ICU LOS and total hospital LOS. Multivariate logistic regression models were used to evaluate these associations, while restricted cubic spline (RCS) regressions assessed potential nonlinear relationships. Additionally, machine learning (ML) techniques, including logistic regression (LR), decision tree (DT), random forest (RF), extreme gradient boosting (XGB), and light gradient boosting machine (LGB), were applied, with the Shapley additive explanation (SHAP) method used to determine feature importance. RESULTS The study enrolled a total of 2423 patients with critically ill ASCVD, predominantly male (54.91%), and revealed that higher AIP values were independently associated with longer ICU and hospital stays. Specifically, for each unit increase in AIP, the odds of prolonged ICU and hospital stays were significantly higher, with adjusted odds ratios (OR) of 1.42 (95% CI, 1.11-1.81; P = 0.006) and 1.73 (95% CI, 1.34-2.24; P < 0.001), respectively. The RCS regression demonstrated a linear relationship between increasing AIP and both ICU LOS and hospital LOS. ML models, specifically LGB (ROC:0.740) and LR (ROC:0.832) demonstrated superior predictive accuracy for these endpoints, identifying AIP as a vital component of hospitalization duration. CONCLUSION AIP is a significant predictor of ICU and hospital LOS in patients with critically ill ASCVD. AIP could serve as an early prognostic tool for guiding clinical decision-making and managing patient outcomes.
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Affiliation(s)
- Yu Guo
- Department of Neurology, The Affiliated Hospital of Qingdao University, Qingdao, China
| | - Fuxu Wang
- Department of Critical Care Medicine, The Affiliated Hospital of Qingdao University, Qingdao, China
| | - Shiyin Ma
- Department of Neurology, The Affiliated Hospital of Qingdao University, Qingdao, China
| | - Zhi Mao
- Department of Critical Care Medicine, The First Medical Center of PLA General Hospital, Beijing, China
| | - Shuangmei Zhao
- Department of Critical Care Medicine, The Affiliated Hospital of Qingdao University, Qingdao, China
| | - Liutao Sui
- Department of Critical Care Medicine, The Affiliated Hospital of Qingdao University, Qingdao, China
| | - Chucheng Jiao
- Department of Critical Care Medicine, The Affiliated Hospital of Qingdao University, Qingdao, China
| | - Ruogu Lu
- Medical Innovation Research Department, Chinese PLA General Hospital, Beijing, China.
| | - Xiaoyan Zhu
- Department of Critical Care Medicine, The Affiliated Hospital of Qingdao University, Qingdao, China.
| | - Xudong Pan
- Department of Neurology, The Affiliated Hospital of Qingdao University, Qingdao, China.
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García-Barberán V, Gómez Del Pulgar ME, Guamán HM, Benito-Martin A. The times they are AI-changing: AI-powered advances in the application of extracellular vesicles to liquid biopsy in breast cancer. EXTRACELLULAR VESICLES AND CIRCULATING NUCLEIC ACIDS 2025; 6:128-140. [PMID: 40206803 PMCID: PMC11977355 DOI: 10.20517/evcna.2024.51] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/18/2024] [Revised: 01/03/2025] [Accepted: 01/25/2025] [Indexed: 04/11/2025]
Abstract
Artificial intelligence (AI) is revolutionizing scientific research by facilitating a paradigm shift in data analysis and discovery. This transformation is characterized by a fundamental change in scientific methods and concepts due to AI's ability to process vast datasets with unprecedented speed and accuracy. In breast cancer research, AI aids in early detection, prognosis, and personalized treatment strategies. Liquid biopsy, a noninvasive tool for detecting circulating tumor traits, could ideally benefit from AI's analytical capabilities, enhancing the detection of minimal residual disease and improving treatment monitoring. Extracellular vesicles (EVs), which are key elements in cell communication and cancer progression, could be analyzed with AI to identify disease-specific biomarkers. AI combined with EV analysis promises an enhancement in diagnosis precision, aiding in early detection and treatment monitoring. Studies show that AI can differentiate cancer types and predict drug efficacy, exemplifying its potential in personalized medicine. Overall, the integration of AI in biomedical research and clinical practice promises significant changes and advancements in diagnostics, personalized medicine-based approaches, and our understanding of complex diseases like cancer.
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Affiliation(s)
- Vanesa García-Barberán
- Molecular Oncology Laboratory, Medical Oncology Department, Hospital Clínico Universitario San Carlos, Instituto de Investigación Sanitaria San Carlos (IdISSC), Madrid 28040, Spain
| | - María Elena Gómez Del Pulgar
- Molecular Oncology Laboratory, Medical Oncology Department, Hospital Clínico Universitario San Carlos, Instituto de Investigación Sanitaria San Carlos (IdISSC), Madrid 28040, Spain
| | - Heidy M. Guamán
- Molecular Oncology Laboratory, Medical Oncology Department, Hospital Clínico Universitario San Carlos, Instituto de Investigación Sanitaria San Carlos (IdISSC), Madrid 28040, Spain
| | - Alberto Benito-Martin
- Molecular Oncology Laboratory, Medical Oncology Department, Hospital Clínico Universitario San Carlos, Instituto de Investigación Sanitaria San Carlos (IdISSC), Madrid 28040, Spain
- Facultad de Medicina, Universidad Alfonso X el Sabio, Madrid 28691, Spain
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Nie F, Pei X, Du J, Shi W, Wang J, Feng L, Liu Y. Multiomics-Based Deep Learning Prediction of Prognosis and Therapeutic Response in Patients With Extensive-Stage Small Cell Lung Cancer Receiving Chemoimmunotherapy: A Retrospective Cohort Study. Int J Gen Med 2025; 18:981-996. [PMID: 40026810 PMCID: PMC11869764 DOI: 10.2147/ijgm.s506485] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2024] [Accepted: 02/04/2025] [Indexed: 03/05/2025] Open
Abstract
Objective This study aimed to develop a clinical early warning prediction model to evaluate the prognosis and response to chemoimmunotherapy in patients with extensive-stage small cell lung cancer (ES-SCLC), thereby guiding clinical decision-making. Methods A retrospective analysis was conducted on the clinical data and radiomics parameters of 309 patients with ES-SCLC hospitalized at Baotou Cancer Hospital from February 2020 to September 2024. Patients were divided into reactive and non-reactive groups based on their response to chemoimmunotherapy.Machine learning algorithms (including random forests, decision trees, artificial neural networks, and generalized linear regression) were used to predict the combined treatment response. The model's predictive ability was evaluated using the receiver operating characteristic (ROC) curve and clinical decision curve analysis(DCA). The prognostic evaluation of patients receiving combination therapy was based on the COX regression model, with predictive performance assessed through nomogram visualization and calibration curves. Results Out of 309 patients with ES-SCLC, 248 (80.26%) responded to combination therapy. Logistic regression and Least absolute shrinkage and selection operator (LASSO) regression analyses identified Energy, sum of squares(SOS), mean sum(MES), sum variance(SUV), sum entropy(SUE), difference variance(DIV), and pathomics score as independent risk factors for treatment response. The area under the ROC curve for predicting treatment response using machine learning were 0.764 (95% confidence interval [CI]: 0.707~0.821) and 0.901 (95% CI: 0.846~0.956) in the training and validation sets. The C-index of the radiomics and pathomics prognostic nomogram model based on the COX prognostic model was 0.766 and 0.812 in those sets, respectively. Conclusion We developed prediction model based on multi-omics demonstrated satisfactory performance in predicting chemoimmunotherapy response in patients with ES-SCLC. The random forest prediction model, in particular, provides accurate response and prognostic risk assessments, thereby assisting clinical decision-making.
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Affiliation(s)
- Fang Nie
- Department of Thoracic Oncology, Baotou Cancer Hospital, Baotou, Inner Mongolia, 014000, People’s Republic of China
| | - Xiufeng Pei
- Department of Thoracic Oncology, Baotou Cancer Hospital, Baotou, Inner Mongolia, 014000, People’s Republic of China
| | - Jiale Du
- Department of Thoracic Oncology, Baotou Cancer Hospital, Baotou, Inner Mongolia, 014000, People’s Republic of China
| | - Wanting Shi
- Department of Thoracic Oncology, Baotou Cancer Hospital, Baotou, Inner Mongolia, 014000, People’s Republic of China
| | - Jianying Wang
- Department of Thoracic Oncology, Baotou Cancer Hospital, Baotou, Inner Mongolia, 014000, People’s Republic of China
| | - Lu Feng
- Department of Thoracic Oncology, Baotou Cancer Hospital, Baotou, Inner Mongolia, 014000, People’s Republic of China
| | - Yonggang Liu
- Department of Thoracic Oncology, Baotou Cancer Hospital, Baotou, Inner Mongolia, 014000, People’s Republic of China
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Maragno E, Ricchizzi S, Winter NR, Hellwig SJ, Stummer W, Hahn T, Holling M. Predictive modeling with linear machine learning can estimate glioblastoma survival in months based solely on MGMT-methylation status, age and sex. Acta Neurochir (Wien) 2025; 167:52. [PMID: 39992425 PMCID: PMC11850473 DOI: 10.1007/s00701-025-06441-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2024] [Accepted: 01/21/2025] [Indexed: 02/25/2025]
Abstract
PURPOSE Machine Learning (ML) has become an essential tool for analyzing biomedical data, facilitating the prediction of treatment outcomes and patient survival. However, the effectiveness of ML models heavily relies on both the choice of algorithms and the quality of the input data. In this study, we aimed to develop a novel predictive model to estimate individual survival for patients diagnosed with glioblastoma (GBM), focusing on key variables such as O6-Methylguanine-DNA Methyltransferase (MGMT) methylation status, age, and sex. METHODS To identify the optimal approach, we utilized retrospective data from 218 patients treated at our brain tumor center. The performance of the ML models was evaluated within repeated tenfold regression. The pipeline comprised five regression estimators, including both linear and non-linear algorithms. Permutation feature importance highlighted the feature with the most significant impact on the model. Statistical significance was assessed using a permutation test procedure. RESULTS The best machine learning algorithm achieved a mean absolute error (MAE) of 12.65 (SD = ± 2.18) and an explained variance (EV) of 7% (SD = ± 1.8%) with p < 0.001. Linear algorithms led to more accurate predictions than non-linear estimators. Feature importance testing indicated that age and positive MGMT-methylation influenced the predictions the most. CONCLUSION In summary, here we provide a novel approach allowing to predict GBM patient's survival in months solely based on key parameters such as age, sex and MGMT-methylation status and underscores MGMT-methylation status as key prognostic factor for GBM patients survival.
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Affiliation(s)
- Emanuele Maragno
- Department of Neurosurgery, University Hospital Münster, Albert-Schweitzer-Campus 1 A, 48149, Münster, Germany
| | - Sarah Ricchizzi
- Department of Neurosurgery, University Hospital Münster, Albert-Schweitzer-Campus 1 A, 48149, Münster, Germany
- Institute for Translational Psychiatry, University of Münster, Münster, Germany
| | - Nils Ralf Winter
- Institute for Translational Psychiatry, University of Münster, Münster, Germany
| | - Sönke Josua Hellwig
- Department of Neurosurgery, University Hospital Münster, Albert-Schweitzer-Campus 1 A, 48149, Münster, Germany
| | - Walter Stummer
- Department of Neurosurgery, University Hospital Münster, Albert-Schweitzer-Campus 1 A, 48149, Münster, Germany
| | - Tim Hahn
- Institute for Translational Psychiatry, University of Münster, Münster, Germany
| | - Markus Holling
- Department of Neurosurgery, University Hospital Münster, Albert-Schweitzer-Campus 1 A, 48149, Münster, Germany.
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Liu Z, Zuo B, Lin J, Sun Z, Hu H, Yin Y, Yang S. Breaking new ground: machine learning enhances survival forecasts in hypercapnic respiratory failure. Front Med (Lausanne) 2025; 12:1497651. [PMID: 40051730 PMCID: PMC11882423 DOI: 10.3389/fmed.2025.1497651] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2024] [Accepted: 01/30/2025] [Indexed: 03/09/2025] Open
Abstract
Background The prognostic prediction of patients with hypercapnic respiratory failure holds significant clinical value. The objective of this study was to develop and validate a predictive model for predicting survival in patients with hypercapnic respiratory failure. Methods The study enrolled a total of 697 patients with hypercapnic respiratory failure, including 565 patients from the First People's Hospital of Yancheng in the modeling group and 132 patients from the People's Hospital of Jiangsu Province in the external validation group. The three selected models were random survival forest (RSF), DeepSurv, a deep learning-based survival prediction algorithm, and Cox Proportional Risk (CoxPH). The model's predictive performance was evaluated using the C-index and Brier score. Receiver operating characteristic curve (ROC), area under ROC curve (AUC), and decision curve analysis (DCA) were employed to assess the accuracy of predicting the prognosis for survival at 6, 12, 18, and 24 months. Results The RSF model (c-index: 0.792) demonstrated superior predictive ability for the prognosis of patients with hypercapnic respiratory failure compared to both the traditional CoxPH model (c-index: 0.699) and DeepSurv model (c-index: 0.618), which was further validated on external datasets. The Brier Score of the RSF model demonstrated superior performance, consistently measuring below 0.25 at the 6-month, 12-month, 18-month, and 24-month intervals. The ROC curve confirmed the superior discrimination of the RSF model, while DCA demonstrated its optimal clinical net benefit in both the modeling group and the external validation group. Conclusion The RSF model offered distinct advantages over the CoxPH and DeepSurv models in terms of clinical evaluation and monitoring of patients with hypercapnic respiratory failure.
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Affiliation(s)
- Zhongxiang Liu
- Department of Respiratory and Critical Care Medicine, The Second Affiliated Hospital of Xi’an Jiaotong University, Xi’an, Shanxi, China
- Department of Respiratory and Critical Care Medicine, The Yancheng Clinical College of Xuzhou Medical University, The First People’s Hospital of Yancheng, Yancheng, China
| | - Bingqing Zuo
- Department of Respiratory and Critical Care Medicine, The Yancheng Clinical College of Xuzhou Medical University, The First People’s Hospital of Yancheng, Yancheng, China
| | - Jianyang Lin
- Disease Prevention and Control Center of Funing County, Yancheng, China
| | - Zhixiao Sun
- Department of Respiratory and Critical Care Medicine, The Yancheng Clinical College of Xuzhou Medical University, The First People’s Hospital of Yancheng, Yancheng, China
| | - Hang Hu
- Department of Respiratory and Critical Care Medicine, The Yancheng Clinical College of Xuzhou Medical University, The First People’s Hospital of Yancheng, Yancheng, China
| | - Yuan Yin
- Department of Respiratory and Critical Care Medicine, The First Affiliated Hospital of Nanjing Medical University, The People’s Hospital of Jiangsu Province, Nanjing, China
| | - Shuanying Yang
- Department of Respiratory and Critical Care Medicine, The Second Affiliated Hospital of Xi’an Jiaotong University, Xi’an, Shanxi, China
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Tian Z, Zhang J, Fan Y, Sun X, Wang D, Liu X, Lu G, Wang H. Diabetic peripheral neuropathy detection of type 2 diabetes using machine learning from TCM features: a cross-sectional study. BMC Med Inform Decis Mak 2025; 25:90. [PMID: 39966886 PMCID: PMC11837659 DOI: 10.1186/s12911-025-02932-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2024] [Accepted: 02/11/2025] [Indexed: 02/20/2025] Open
Abstract
AIMS Diabetic peripheral neuropathy (DPN) is the most common complication of diabetes mellitus. Early identification of individuals at high risk of DPN is essential for successful early intervention. Traditional Chinese medicine (TCM) tongue diagnosis, one of the four diagnostic methods, lacks specific algorithms for TCM symptoms and tongue features. This study aims to develop machine learning (ML) models based on TCM to predict the risk of diabetic peripheral neuropathy (DPN) in patients with type 2 diabetes mellitus (T2DM). METHODS A total of 4723 patients were included in the analysis (4430 with T2DM and 293 with DPN). TFDA-1 was used to obtain tongue images during a questionnaire survey. LASSO (least absolute shrinkage and selection operator) logistic regression model with fivefold cross-validation was used to select imaging features, which were then screened using best subset selection. The synthetic minority oversampling technique (SMOTE) algorithm was applied to address the class imbalance and eliminate possible bias. The area under the receiver operating characteristic curve (AUC) was used to evaluate the model's performance. Four ML algorithms, namely logistic regression (LR), random forest (RF), support vector classifier (SVC), and light gradient boosting machine (LGBM), were used to build predictive models for DPN. The importance of covariates in DPN was ranked using classifiers with better performance. RESULTS The RF model performed the best, with an accuracy of 0.767, precision of 0.718, recall of 0.874, F-1 score of 0.789, and AUC of 0.77. With a value of 0.879, the LGBM model appeared to be the best regarding recall Age, sweating, dark red tongue, insomnia, and smoking were the five most significant RF features. Age, yellow coating, loose teeth, smoking, and insomnia were the five most significant features of the LGBM model. CONCLUSIONS This cross-sectional study demonstrates that the RF and LGBM models can screen for high-risk DPN in T2DM patients using TCM symptoms and tongue features. The identified key TCM-related features, such as age, tongue coating, and other symptoms, may be advantageous in developing preventative measures for T2DM patients.
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Affiliation(s)
- Zhikui Tian
- School of Rehabilitation Medicine, Qilu Medical University, Shandong, 255300, China
| | - JiZhong Zhang
- School of Rehabilitation Medicine, Qilu Medical University, Shandong, 255300, China
| | - Yadong Fan
- Medical College of Yangzhou University, YangZhou, 225000, China
| | - Xuan Sun
- College of Traditional Chinese Medicine, Binzhou Medical University, Shandong, China
| | - Dongjun Wang
- College of Traditional Chinese Medicine, North China University of Science and Technology, Tangshan, 063000, China
| | - XiaoFei Liu
- School of Rehabilitation Medicine, Qilu Medical University, Shandong, 255300, China
| | - GuoHui Lu
- School of Rehabilitation Medicine, Qilu Medical University, Shandong, 255300, China.
| | - Hongwu Wang
- School of Health Sciences and Engineering, Tianjin University of Traditional Chinese Medicine, Tianjin, 301617, China.
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Wang F, Mao Y, Sun J, Yang J, Xiao L, Huang Q, Wei C, Gou Z, Zhang K. Models based on dietary nutrients predicting all-cause and cardiovascular mortality in people with diabetes. Sci Rep 2025; 15:4600. [PMID: 39920222 PMCID: PMC11805981 DOI: 10.1038/s41598-025-88480-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2024] [Accepted: 01/28/2025] [Indexed: 02/09/2025] Open
Abstract
Dietary intervention plays a vital role in improving the prognosis of people with diabetes mellitus (DM). Currently, there is a lack of systematic analysis of the relation between dietary nutrients and long-term mortality risk in people with DM. The study aims to establish models predicting long-term mortality and explore dietary nutrients associated with reduced long-term events to guide daily dietary decisions in people with DM. The retrospective cohort study collected 5060 participants with DM from the National Health and Nutrition Examination Survey (NHANES) 1999-2018. The least absolute shrinkage and selection operator (LASSO) regression and random forest (RF) algorithm were applied to identify key mortality-related dietary factors, which were subsequently incorporated into risk prediction nomogram models. The receiver operating characteristic (ROC) curve, calibration plot and decision curve analysis (DCA) were utilized to evaluate the performance of the models. The association of key dietary nutrients with all-cause and cardiovascular mortality were visualized by restricted cubic spline (RCS) models both in the whole and subgroups by sex, age, drinking and smoking status. The overall median age of the cohort was 62.0 years (interquartile range (IQR) 52.0-70.0), 2564 (50.67%) being male. During a median follow-up period of 56.0 months, 997 (19.70%) all-cause deaths were recorded, with 219 (21.97%) of which being ascribed to cardiovascular disease. The nomogram models based on key dietary nutrients identified by LASSO and RF demonstrated a significant predicative value for all-cause and cardiovascular mortality. Dietary fiber and magnesium were the common predictive nutrients in the two nomogram models. The RCS curve revealed that dietary fiber and magnesium were negatively associated with long-term mortality in the whole and subgroups of people with DM after adjustment of potential confounders. The diet of people with DM is closely associated with mortality. The nomogram models based on dietary nutrients can predict long-term mortality of people with DM, and the higher intake of dietary fiber and magnesium was associated with reduced risks of both long-term all-cause and cardiovascular mortality.
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Affiliation(s)
- Fang Wang
- Center for Cardiovascular Disease, The Affiliated Suzhou Hospital of Nanjing Medical University, Suzhou Municipal Hospital, Gusu School, Nanjing Medical University, 242# Guangji Road, Suzhou, 215000, Jiangsu, China
| | - Yukang Mao
- Center for Cardiovascular Disease, The Affiliated Suzhou Hospital of Nanjing Medical University, Suzhou Municipal Hospital, Gusu School, Nanjing Medical University, 242# Guangji Road, Suzhou, 215000, Jiangsu, China
| | - Jinyu Sun
- Center for Cardiovascular Disease, The Affiliated Suzhou Hospital of Nanjing Medical University, Suzhou Municipal Hospital, Gusu School, Nanjing Medical University, 242# Guangji Road, Suzhou, 215000, Jiangsu, China
| | - Jiaming Yang
- Department of Cardiology, The First Affiliated Hospital of Nanjing Medical University, Nanjing Medical University, Nanjing, 210000, Jiangsu, China
| | - Li Xiao
- Center for Cardiovascular Disease, The Affiliated Suzhou Hospital of Nanjing Medical University, Suzhou Municipal Hospital, Gusu School, Nanjing Medical University, 242# Guangji Road, Suzhou, 215000, Jiangsu, China
| | - Qingxia Huang
- Center for Cardiovascular Disease, The Affiliated Suzhou Hospital of Nanjing Medical University, Suzhou Municipal Hospital, Gusu School, Nanjing Medical University, 242# Guangji Road, Suzhou, 215000, Jiangsu, China
| | - Chenchen Wei
- Center for Cardiovascular Disease, The Affiliated Suzhou Hospital of Nanjing Medical University, Suzhou Municipal Hospital, Gusu School, Nanjing Medical University, 242# Guangji Road, Suzhou, 215000, Jiangsu, China
| | - Zhongshan Gou
- Center for Cardiovascular Disease, The Affiliated Suzhou Hospital of Nanjing Medical University, Suzhou Municipal Hospital, Gusu School, Nanjing Medical University, 242# Guangji Road, Suzhou, 215000, Jiangsu, China.
| | - Kerui Zhang
- Center for Cardiovascular Disease, The Affiliated Suzhou Hospital of Nanjing Medical University, Suzhou Municipal Hospital, Gusu School, Nanjing Medical University, 242# Guangji Road, Suzhou, 215000, Jiangsu, China.
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Dube AR, Ambrose AJH, Velez G, Jadhav M. Real concerns, artificial intelligence: Reality testing for psychiatrists. Int Rev Psychiatry 2025; 37:33-38. [PMID: 40035377 DOI: 10.1080/09540261.2024.2363374] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/25/2024] [Accepted: 05/29/2024] [Indexed: 03/05/2025]
Abstract
The use of augmented or artificial intelligence (AI) in healthcare promises groundbreaking advancements, from increasing diagnostic accuracy and minimizing clinical errors to personalized treatment plans and automated clinical decision-making. Its use may allow us to transition from phenomenological categories of psychiatric illness to one driven by underlying etiology and realize the Research Domain Criteria (RDoC) model proposed by the (U.S.) National Institutes of Mental Health (NIMH), which today remains difficult to apply clinically and is accessible primarily to researchers. AI may facilitate the transition to a more syncretic framework of understanding psychiatric illness that accounts for disruptions, all the way from the cellular level to the level of social systems. Yet, despite immense possibilities, there are also associated risks. In this article, we explore the challenges and opportunities associated with the use of AI in psychiatry, focusing on the potential ethical and health equity considerations in vulnerable populations, especially in child and adolescent psychiatry.
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Affiliation(s)
- Anish R Dube
- Riverside University Health System/Loma Linda University, Moreno Valley, CA, USA
| | - Adrian Jacques H Ambrose
- Department of Psychiatry, Columbia University Irving Medical Center, Vagelos College of Physicians & Surgeons, New York City, NY, USA
| | - German Velez
- Weill Cornell Medicine, The Columbia College of Physicians and Surgeons, New York City, NY, USA
| | - Mandar Jadhav
- National Association of Community Health Centers, Bethesda, MD, USA
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Wang D, Chen R, Wang W, Yang Y, Yu Y, Liu L, Yang F, Cui S. Prediction of short-term adverse clinical outcomes of acute pulmonary embolism using conventional machine learning and deep Learning based on CTPA images. J Thromb Thrombolysis 2025; 58:331-339. [PMID: 39342072 DOI: 10.1007/s11239-024-03044-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 09/09/2024] [Indexed: 10/01/2024]
Abstract
To explore the predictive value of traditional machine learning (ML) and deep learning (DL) algorithms based on computed tomography pulmonary angiography (CTPA) images for short-term adverse outcomes in patients with acute pulmonary embolism (APE). This retrospective study enrolled 132 patients with APE confirmed by CTPA. Thrombus segmentation and texture feature extraction was performed using 3D-Slicer software. The least absolute shrinkage and selection operator (LASSO) algorithm was used for feature dimensionality reduction and selection, with optimal λ values determined using leave-one-fold cross-validation to identify texture features with non-zero coefficients. ML models (logistic regression, random forest, decision tree, support vector machine) and DL models (ResNet 50 and Vgg 19) were used to construct the prediction models. Model performance was evaluated using receiver operating characteristic (ROC) curves and the area under the curve (AUC). The cohort included 84 patients in the good prognosis group and 48 patients in the poor prognosis group. Univariate and multivariate logistic regression analyses showed that diabetes, RV/LV ≥ 1.0, and Qanadli index form independent risk factors predicting poor prognosis in patients with APE(P < 0.05). A total of 750 texture features were extracted, with 4 key features identified through screening. There was a weak positive correlation between texture features and clinical parameters. ROC curves analysis demonstrated AUC values of 0.85 (0.78-0.92), 0.76 (0.67-0.84), and 0.89 (0.83-0.95) for the clinical, texture feature, and combined models, respectively. In the ML models, the random forest model achieved the highest AUC (0.85), and the support vector machine model achieved the lowest AUC (0.62). And the AUCs for the DL models (ResNet 50 and Vgg 19) were 0.91 (95%CI: 0.90-0.92) and 0.94(95%CI: 0.93-0.95), respectively. Vgg 19 model demonstrated exceptional precision (0.93), recall (0.76), specificity (0.95) and F1 score (0.84). Both ML and DL models based on thrombus texture features from CTPA images demonstrated higher predictive efficacy for short-term adverse outcomes in patients with APE, especially the random forest and Vgg 19 models, potentially assisting clinical management in timely interventions to improve patient prognosis.
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Affiliation(s)
- Dawei Wang
- Department of Thoracic Surgery, The First Affiliated Hospital of Hebei North University, Zhangjiakou, Hebei, 075000, China
| | - Rong Chen
- Hebei North University, Zhangjiakou, Hebei, 075000, China
| | - Wenjiang Wang
- Hebei North University, Zhangjiakou, Hebei, 075000, China
| | - Yue Yang
- Hebei North University, Zhangjiakou, Hebei, 075000, China
| | - Yaxi Yu
- Hebei North University, Zhangjiakou, Hebei, 075000, China
| | - Lan Liu
- Department of Medical Imaging, The First Affiliated Hospital of Hebei North University, 12 Changqing Road, Zhangjiakou, Hebei, 075000, China
| | - Fei Yang
- Department of Medical Imaging, The First Affiliated Hospital of Hebei North University, 12 Changqing Road, Zhangjiakou, Hebei, 075000, China.
| | - Shujun Cui
- Department of Medical Imaging, The First Affiliated Hospital of Hebei North University, 12 Changqing Road, Zhangjiakou, Hebei, 075000, China
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Faheem F, Haq M, Derhab M, Saeed R, Ahmad U, Kalia JS. Integrating Ethical Principles Into the Regulation of AI-Driven Medical Software. Cureus 2025; 17:e79506. [PMID: 40135040 PMCID: PMC11936099 DOI: 10.7759/cureus.79506] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/23/2025] [Indexed: 03/27/2025] Open
Abstract
In recent years, a sharp increase in artificial intelligence (AI)-based software as medical devices has been seen in the United States and the European Union. Despite the huge potential of these devices in alleviating suffering through rapid identification and early intervention, their adoption in clinical practice has remained relatively slow due to ethical questions surrounding their usage. Even though there is no universal framework for the approval of these devices, the guiding principles behind individual regulatory bodies almost stay the same, with some more focused on the technical aspect while others involving the ethical aspects as well. The International Medical Device Regulators Forum devised a SaMD Working Group to outline the essential controls guiding the approval of these devices, but there is a lack of a structured approach for the regulatory approval process. This article outlines the principles of medical ethics, such as autonomy, beneficence, and fair distribution of healthcare sources, and how they relate to the use of AI-based devices. The core regulatory guidelines are then viewed in light of these ethical principles. We recommend that a comprehensive regulatory framework with integration of principles of medical ethics be made public. Though no universally accepted framework is available, regulating quality management, risk assessment, and data privacy would help build trust to promote the adoption of AI in healthcare.
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Affiliation(s)
| | - Mahdi Haq
- Neurology, NeuroCare.AI, Dallas, USA
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Wang Y, Qu C, Zeng J, Jiang Y, Sun R, Li C, Li J, Xing C, Tan B, Liu K, Liu Q, Zhao D, Cao J, Hu W. Establishing a preoperative predictive model for gallbladder adenoma and cholesterol polyps based on machine learning: a multicentre retrospective study. World J Surg Oncol 2025; 23:27. [PMID: 39875897 PMCID: PMC11773841 DOI: 10.1186/s12957-025-03671-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2024] [Accepted: 01/19/2025] [Indexed: 01/30/2025] Open
Abstract
BACKGROUND With the rising diagnostic rate of gallbladder polypoid lesions (GPLs), differentiating benign cholesterol polyps from gallbladder adenomas with a higher preoperative malignancy risk is crucial. This study aimed to establish a preoperative prediction model capable of accurately distinguishing between gallbladder adenomas and cholesterol polyps using machine learning algorithms. MATERIALS AND METHODS We retrospectively analysed the patients' clinical baseline data, serological indicators, and ultrasound imaging data. Using 12 machine learning algorithms, 110 combination predictive models were constructed. The models were evaluated using internal and external cohort validation, receiver operating characteristic curves, area under the curve (AUC) values, calibration curves, and clinical decision curves to determine the best predictive model. RESULTS Among the 110 combination predictive models, the Support Vector Machine + Random Forest (SVM + RF) model demonstrated the highest AUC values of 0.972 and 0.922 in the training and internal validation sets, respectively, indicating an optimal predictive performance. The model-selected features included gallbladder wall thickness, polyp size, polyp echo, and pedicle. Evaluation through external cohort validation, calibration curves, and clinical decision curves further confirmed its excellent predictive ability for distinguishing gallbladder adenomas from cholesterol polyps. Additionally, this study identified age, adenosine deaminase level, and metabolic syndrome as potential predictive factors for gallbladder adenomas. CONCLUSION This study employed the machine learning combination algorithms and preoperative ultrasound imaging data to construct an SVM + RF predictive model, enabling effective preoperative differentiation of gallbladder adenomas and cholesterol polyps. These findings will assist clinicians in accurately assessing the risk of GPLs and providing personalised treatment strategies.
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Affiliation(s)
- Yubing Wang
- Department of Hepatobiliary and Pancreas, Affiliated Hospital of Qingdao University, NO.1677 Wutaishan Road, Qingdao, Shandong Province, 266555, China
| | - Chao Qu
- Department of Hepatobiliary and Pancreas, Affiliated Hospital of Qingdao University, NO.1677 Wutaishan Road, Qingdao, Shandong Province, 266555, China
| | - Jiange Zeng
- Department of Hepatobiliary and Pancreas, Affiliated Hospital of Qingdao University, NO.1677 Wutaishan Road, Qingdao, Shandong Province, 266555, China
| | - Yumin Jiang
- Department of Hepatobiliary and Pancreas, Affiliated Hospital of Qingdao University, NO.1677 Wutaishan Road, Qingdao, Shandong Province, 266555, China
| | - Ruitao Sun
- Department of Hepatobiliary and Pancreas, Affiliated Hospital of Qingdao University, NO.1677 Wutaishan Road, Qingdao, Shandong Province, 266555, China
| | - Changlei Li
- Department of Hepatobiliary and Pancreas, Affiliated Hospital of Qingdao University, NO.1677 Wutaishan Road, Qingdao, Shandong Province, 266555, China
| | - Jian Li
- Department of Hepatobiliary Surgery, Shandong Second Medical University, No.7166, Baotong West Street, Weicheng District, Weifang, Shandong Province, 261053, China
| | - Chengzhi Xing
- Department of Hepatobiliary Surgery, Yantai Mountain Hospital, 10087, Science and Technology Avenue, Laishan District, Yantai, Shandong, 264001, China
| | - Bin Tan
- Department of Hepatobiliary and Pancreas, Affiliated Hospital of Qingdao University, NO.1677 Wutaishan Road, Qingdao, Shandong Province, 266555, China
| | - Kui Liu
- Department of Hepatobiliary and Pancreas, Affiliated Hospital of Qingdao University, NO.1677 Wutaishan Road, Qingdao, Shandong Province, 266555, China
| | - Qing Liu
- Department of Hepatobiliary Surgery, Yantai Mountain Hospital, 10087, Science and Technology Avenue, Laishan District, Yantai, Shandong, 264001, China
| | - Dianpeng Zhao
- Department of Hepatobiliary Surgery, Shandong Second Medical University, No.7166, Baotong West Street, Weicheng District, Weifang, Shandong Province, 261053, China
| | - Jingyu Cao
- Department of Hepatobiliary and Pancreas, Affiliated Hospital of Qingdao University, NO.1677 Wutaishan Road, Qingdao, Shandong Province, 266555, China.
| | - Weiyu Hu
- Department of Hepatobiliary and Pancreas, Affiliated Hospital of Qingdao University, NO.1677 Wutaishan Road, Qingdao, Shandong Province, 266555, China.
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Yang L, Du L, Ge Y, Ou M, Huang W, Wang X. Prognosis modelling of adverse events for post-PCI treated AMI patients based on inflammation and nutrition indexes. BMC Cardiovasc Disord 2025; 25:36. [PMID: 39849369 PMCID: PMC11756209 DOI: 10.1186/s12872-025-04480-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2024] [Accepted: 01/06/2025] [Indexed: 01/25/2025] Open
Abstract
OBJECTIVE This study aimed to evaluate the predictive performance of inflammatory and nutritional indices for adverse cardiovascular events (ACE) in patients with acute myocardial infarction (AMI) after percutaneous coronary intervention (PCI) using a machine learning (ML) algorithm. METHODS AMI patients who underwent PCI were recruited and randomly divided into non/ACE groups. Inflammatory and nutritional indices were graded according to the laboratory examination reports. Logistic Regression was used to screen for factors that were significant for ML model establishment. The performances of the algorithms were evaluated in terms of accuracy, kappa, F1, receiver operating characteristic, precision recall curve, etc. RESULTS: Age, LVEF%, Killip Grade, heart rate, creatinine, albumin, neutrophil/lymphocyte ratio (NLR), platelet/lymphocyte ratio (PLR), and prognostic nutritional index (PNI) were significantly correlated with ACE by Logistic regression analysis (P < 0.05). These nine factors were employed to establish stepwise regression (SR), random forest (RF), naïve Bayes (NB), decision trees (DT), and artificial neutron network (ANN), whose performances were evaluated in terms of accuracy, kappa, F1, receiver operating characteristic, precision recall curve, etc. The accuracy of the decision tree was greater than that of other trees. The area under the curves was the highest in the ANN model compared with the other models. CONCLUSION ANN predictive performance had an advantage over other ML algorithms based on age, LVEF%, Killip Grade, heart rate, creatinine, albumin, NLR, PLR, and PNI.
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Affiliation(s)
- Liu Yang
- Department of Cardiology, The Affiliated 920th Hospital of Joint Logistics Support Force, Kunming Medical University, Kunming, China
| | - Li Du
- Department of Cardiology, 920th Hospital of Joint Logistics Support Force, People's Liberation Army of China (PLA), Kunming, Yunnan, China
| | - Yuanyuan Ge
- Department of Cardiology, 920th Hospital of Joint Logistics Support Force, People's Liberation Army of China (PLA), Kunming, Yunnan, China
| | - Muhui Ou
- Department of Cardiology, The Affiliated 920th Hospital of Joint Logistics Support Force, Kunming Medical University, Kunming, China
| | - Wanyan Huang
- Department of Cardiology, The Affiliated 920th Hospital of Joint Logistics Support Force, Kunming Medical University, Kunming, China
| | - Xianmei Wang
- Department of Cardiology, 920th Hospital of Joint Logistics Support Force, People's Liberation Army of China (PLA), Kunming, Yunnan, China.
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Chen H, Han J, Li J, Xiong J, Wang D, Han M, Shen Y, Lu W. Risk prediction models for feeding intolerance in patients with enteral nutrition: a systematic review and meta-analysis. Front Nutr 2025; 11:1522911. [PMID: 39877537 PMCID: PMC11772164 DOI: 10.3389/fnut.2024.1522911] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2024] [Accepted: 12/23/2024] [Indexed: 01/31/2025] Open
Abstract
Background Although more risk prediction models are available for feeding intolerance in enteral-nourishment patients, it is still unclear how well these models will work in clinical settings. Future research faces challenges in validating model accuracy across populations, enhancing interpretability for clinical use, and overcoming dataset limitations. Objective To thoroughly examine studies that have been published on feeding intolerance risk prediction models for enteral nutrition patients. Design Conducted a systematic review and meta-analysis of observational studies. Methods A comprehensive search of the literature was conducted using a range of databases, including China National Knowledge Infrastructure (CNKI), Wanfang Database, China Science and Technology Journal Database (VIP), SinoMed, PubMed, Web of Science, The Cochrane Library, Cumulative Index to Nursing and Allied Health Literature (CINAHL) and Embase. The search scope was confined to articles within the database from its inception until August 12th, 2024. The data from the selected studies should be extracted, including study design, subjects, duration of follow-up, data sources, outcome measures, sample size, handling of missing data, continuous variable handling methods, variable selection, final predictors, model development and performance, and form of model presentation. The applicability and bias risk were evaluated using the Prediction Model Risk of Bias Assessment Tool (PROBAST) checklist. Results A total of 1,472 studies were retrieved. Following the selection criteria, 18 prediction models sourced from 14 studies were incorporated into this review. In the field of model construction, only one study employed the use of multiple machine-learning techniques for the development of a model. In contrast, the remaining studies used logistic regression to construct FI risk prediction models. The incidence of FI in enteral nutrition was 32.4-63.1%. The top five predictors included in the model were APACHE II, age, albumin levels, intra-abdominal pressure, and mechanical ventilation. The reported AUC, or area under the curve, exhibited a range of values between 0.70 and 0.921. All studies were identified as having a high risk of bias, primarily due to the use of inappropriate data sources and inadequate reporting within the analysis domain. Conclusion Although the included studies reported a certain degree of discriminatory power in their predictive models to identify feeding intolerance in patients undergoing enteral nutrition, the PROBAST assessment tool deemed all the included studies to carry a significant risk of bias. Future research should emphasize the development of innovative predictive models. These endeavors should incorporate more extensive and diverse sample sizes, adhere to stringent methodological designs, and undergo rigorous multicenter external validation to ensure robustness and generalizability. Systematic review registration Identifier CRD42024585099, https://www.crd.york.ac.uk/prospero/display_record.php?RecordID=585099.
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Affiliation(s)
- Huijiao Chen
- Department of Neurosurgery, Tianjin Medical University General Hospital, Tianjin, China
| | - Jin Han
- Department of Neurosurgery, Tianjin Medical University General Hospital, Tianjin, China
| | - Jing Li
- Department of Neurosurgery, Tianjin Medical University General Hospital, Tianjin, China
| | - Jianhua Xiong
- Department of Neurosurgery, Tianjin Medical University General Hospital, Tianjin, China
| | - Dong Wang
- Department of Neurosurgery, Tianjin Medical University General Hospital, Tianjin, China
| | - Mingming Han
- Department of Neurosurgery, Tianjin Medical University General Hospital, Tianjin, China
| | - Yuehao Shen
- Department of Critical Care Medicine, Tianjin Medical University General Hospital, Tianjin, China
| | - Wenli Lu
- Department of Epidemiology and Health Statistics, Tianjin Medical University, Tianjin, China
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Figueiredo RG, Calderón J. Artificial intelligence in respiratory research: opportunities, pitfalls, and ethical considerations. J Bras Pneumol 2025; 50:e20240346. [PMID: 39813507 PMCID: PMC11665316 DOI: 10.36416/1806-3756/e20240346] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2025] Open
Affiliation(s)
- Ricardo G Figueiredo
- . Programa de Pós-Graduação em Saúde Coletiva, Universidade Estadual de Feira de Santana - PPGSC-UEFS - Feira de Santana (BA) Brasil
- . Fundação ProAR, Salvador (BA) Brasil
- . Methods in Epidemiologic, Clinical, and Operations Research-MECOR-program, American Thoracic Society/Asociación Latinoamericana del Tórax, Montevideo, Uruguay
| | - Juan Calderón
- . Methods in Epidemiologic, Clinical, and Operations Research-MECOR-program, American Thoracic Society/Asociación Latinoamericana del Tórax, Montevideo, Uruguay
- . Universidad Espíritu Santo, Samborondón, Ecuador
- . Respiralab Research Group, Guayaquil, Ecuador
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Ma Q, Gao J, Hui Y, Zhang ZM, Qiao YJ, Yang BF, Gong T, Zhao DM, Huang BR. Single-cell RNA-sequencing and genome-wide Mendelian randomisation along with abundant machine learning methods identify a novel B cells signature in gastric cancer. Discov Oncol 2025; 16:11. [PMID: 39760915 PMCID: PMC11703799 DOI: 10.1007/s12672-025-01759-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/28/2024] [Accepted: 01/02/2025] [Indexed: 01/07/2025] Open
Abstract
BACKGROUND Gastric cancer (GC) has a poor prognosis, considerable cellular heterogeneity, and ranks fifth among malignant tumours. Understanding the tumour microenvironment (TME) and intra-tumor heterogeneity (ITH) may lead to the development of novel GC treatments. METHODS The single-cell RNA sequencing (scRNA-seq) dataset was obtained from the Gene Expression Omnibus (GEO) database, where diverse immune cells were isolated and re-annotated based on cell markers established in the original study to ascertain their individual characteristics. We conducted a weighted gene co-expression network analysis (WGCNA) to identify genes with a significant correlation to GC. Utilising bulk RNA sequencing data, we employed machine learning integration methods to train specific biomarkers for the development of novel diagnostic combinations. A two-sample Mendelian randomisation study was performed to investigate the causal effect of biomarkers on gastric cancer (GC). Ultimately, we utilised the DSigDB database to acquire associations between signature genes and pharmaceuticals. RESULTS The 18 genes that made up the signature were as follows: ZFAND2A, PBX4, RAMP2, NNMT, RNASE1, CD93, CDH5, NFKBIE, VWF, DAB2, FAAH2, VAT1, MRAS, TSPAN4, EPAS1, AFAP1L1, DNM3. Patients were categorised into high-risk and low-risk groups according to their risk scores. Individuals in the high-risk cohort exhibited a dismal outlook. The Mendelian randomisation study demonstrated that individuals with a genetic predisposition for elevated NFKBIE levels exhibited a heightened likelihood of acquiring GC. Molecular docking indicates that gemcitabine and chloropyramine may serve as effective therapeutics against NFKBIE. CONCLUSIONS We developed and validated a signature utilising scRNA-seq and bulk sequencing data from gastric cancer patients. NFKBIE may function as a novel biomarker and therapeutic target for GC.
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Affiliation(s)
- Qi Ma
- Gansu Provincial Hospital of Traditional Chinese Medicine, Lanzhou, 730050, China
| | - Jie Gao
- Gansu University of Traditional Chinese Medicine, Lanzhou, China
| | - Yuan Hui
- Gansu Provincial Hospital of Traditional Chinese Medicine, Lanzhou, 730050, China
| | - Zhi-Ming Zhang
- Gansu Provincial Hospital of Traditional Chinese Medicine, Lanzhou, 730050, China
| | - Yu-Jie Qiao
- Gansu Provincial Hospital of Traditional Chinese Medicine, Lanzhou, 730050, China
| | - Bin-Feng Yang
- Gansu Provincial Hospital of Traditional Chinese Medicine, Lanzhou, 730050, China
| | - Ting Gong
- Gansu Provincial Hospital of Traditional Chinese Medicine, Lanzhou, 730050, China
| | - Duo-Ming Zhao
- Gansu Provincial Hospital of Traditional Chinese Medicine, Lanzhou, 730050, China
| | - Bang-Rong Huang
- Gansu Provincial Hospital of Traditional Chinese Medicine, Lanzhou, 730050, China.
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Marinaro J, Goldstein M. Current and Future Applications of Artificial Intelligence to Diagnose and Treat Male Infertility. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2025; 1469:1-23. [PMID: 40301250 DOI: 10.1007/978-3-031-82990-1_1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/01/2025]
Abstract
Artificial intelligence (AI) models are being increasingly applied to modern medicine. Within the field of urology, reproductive urology specifically offers many opportunities to utilize this advanced computational technology for diagnostic and therapeutic benefit. While the use of AI models in diagnosing and treating male infertility remains in its early days, current and future applications of these models include automation of semen analysis testing; predicting semen quality; identifying subsets of infertile men most likely to benefit from surgical treatment (i.e., varicocelectomy, surgical sperm retrieval); identifying rare sperm from testis tissue; and selecting optimal sperm for in vitro fertilization (IVF) with intracytoplasmic sperm injection (ICSI). In this chapter, we review the current literature surrounding these applications and discuss opportunities for future research.
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Affiliation(s)
- Jessica Marinaro
- Department of Urology, Weill Cornell Medicine, New York, NY, USA.
- Center for Male Reproductive Medicine, Weill Cornell Medicine, New York, NY, USA.
| | - Marc Goldstein
- Department of Urology, Weill Cornell Medicine, New York, NY, USA
- Center for Male Reproductive Medicine, Weill Cornell Medicine, New York, NY, USA
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