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Huang S, Bai Y, Qi R, Yu H, Duan X. Personalized prediction of psoriasis relapse post-biologic discontinuation: a machine learning-driven population cohort study. J DERMATOL TREAT 2025; 36:2480743. [PMID: 40107277 DOI: 10.1080/09546634.2025.2480743] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2024] [Accepted: 03/05/2025] [Indexed: 03/22/2025]
Abstract
BACKGROUND Identifying the risk of psoriasis relapse after discontinuing biologics can help optimize treatment strategies, potentially reducing relapse rates and alleviating the burden of disease management. OBJECTIVE To develop and validate a personalized prediction model for psoriasis relapse following the discontinuation of biologics. METHODS This study enrolled patients who achieved remission following biologic therapy. Relapse predictors were identified using the Boruta algorithm combined with multivariate Cox regression. A nomogram and an online calculator were created to aid in the visualization and computation of outcomes. The model's performance was thoroughly assessed using Receiver Operating Characteristic (ROC) curves, Area Under the Curve (AUC), C-statistics, calibration plots, and Decision Curve Analysis (DCA). RESULTS The study included 597 patients, with 534 in the derivation cohort and 63 in the validation cohort. Anxiety, disease duration, prior biologic treatments, treatment duration, time to achieve PASI 75, and maximum PASI response were identified as influential factors for relapse and were incorporated into the model. Both internal and external evaluations indicate that the model exhibits good predictive accuracy. CONCLUSION A multivariate model leveraging standard clinical data can relatively accurately predict the risk of psoriasis relapse post-biologic discontinuation, guiding personalized treatment strategies.
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Affiliation(s)
- Shan Huang
- Dongzhimen Hospital, Beijing University of Chinese Medicine, Beijing, China
| | - Yanping Bai
- Department of Dermatology, China-Japan Friendship Hospital, National Center for Integrative Chinese and Western Medicine, Beijing, China
| | - Ruozhou Qi
- Dongzhimen Hospital, Beijing University of Chinese Medicine, Beijing, China
| | - Hongda Yu
- Department of Dermatology, China-Japan Friendship Hospital, National Center for Integrative Chinese and Western Medicine, Beijing, China
| | - Xingwu Duan
- Dongzhimen Hospital, Beijing University of Chinese Medicine, Beijing, China
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2
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Badr S, Tahri M, Maanan M, Kašpar J, Yousfi N. An intelligent decision-making system for embryo transfer in reproductive technology: a machine learning-based approach. Syst Biol Reprod Med 2025; 71:13-28. [PMID: 39873464 DOI: 10.1080/19396368.2024.2445831] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/05/2024] [Revised: 11/04/2024] [Accepted: 12/15/2024] [Indexed: 01/30/2025]
Abstract
Infertility has emerged as a significant public health concern, with assisted reproductive technology (ART) is a last-resort treatment option. However, ART's efficacy is limited by significant financial cost and physical discomfort. The aim of this study is to build Machine learning (ML) decision-support models to predict the optimal range of embryo numbers to transfer, using data from infertile couples identified through literature reviews. Binary classification models were developed to classify cases into two groups: those transferring two or fewer embryos and those transferring three or four. Four popular ML algorithms were used, including random forest (RF), logistic regression (LR), support vector machine (SVM), and artificial neural network (ANN), considering seven criteria: the woman's age, sperm origin, the developmental qualities of four potential embryos, infertility duration, assessment of the woman, morphological qualities of the four best embryos on the day of transfer, and number of oocytes extracted. The stratified 3-fold cross-validation results show that the SVM model obtained the highest average accuracy (95.83%) and demonstrated the best overall performance, closely followed by the ANN and LR models with an average accuracy equal to 91.67%. The RF model achieved a slightly lower average accuracy (88.89%), which demonstrated the lowest variability. Testing on a new dataset revealed all models performed well, with ANN and SVM models classified all test set instances correctly, while the RF and LR models achieved 91.68% accuracy. These results highlight the superior generalization and effectiveness of the ANN and SVM models in guiding ART decisions.
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Affiliation(s)
- Sanaa Badr
- Department of Mathematics and Computer Science, Laboratory of Analysis, Modeling and Simulation, Faculty of Sciences Ben M'sik, Hassan II University of Casablanca, Casablanca, Morocco
| | - Meryem Tahri
- Faculty of Forestry and Wood Sciences, Czech University of Life Sciences Prague (CZU), Praha-Suchdol, Czech Republic
| | - Mohamed Maanan
- Laboratory of Littoral, Environment, Remote Sensing and Geomatic (LETG) - UMR6554, Universit´e de Nantes, Nantes, France
| | - Jan Kašpar
- Faculty of Forestry and Wood Sciences, Czech University of Life Sciences Prague (CZU), Praha-Suchdol, Czech Republic
| | - Noura Yousfi
- Department of Mathematics and Computer Science, Laboratory of Analysis, Modeling and Simulation, Faculty of Sciences Ben M'sik, Hassan II University of Casablanca, Casablanca, Morocco
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Lei C, Sun W, Wang K, Weng R, Kan X, Li R. Artificial intelligence-assisted diagnosis of early gastric cancer: present practice and future prospects. Ann Med 2025; 57:2461679. [PMID: 39928093 PMCID: PMC11812113 DOI: 10.1080/07853890.2025.2461679] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/08/2024] [Revised: 12/09/2024] [Accepted: 01/23/2025] [Indexed: 02/11/2025] Open
Abstract
Gastric cancer (GC) occupies the first few places in the world among tumors in terms of incidence and mortality, causing serious harm to human health, and at the same time, its treatment greatly consumes the health care resources of all countries in the world. The diagnosis of GC is usually based on histopathologic examination, and it is very important to be able to detect and identify cancerous lesions at an early stage, but some endoscopists' lack of diagnostic experience and fatigue at work lead to a certain rate of under diagnosis. The rapid and striking development of Artificial intelligence (AI) has helped to enhance the ability to extract abnormal information from endoscopic images to some extent, and more and more researchers are applying AI technology to the diagnosis of GC. This initiative has not only improved the detection rate of early gastric cancer (EGC), but also significantly improved the survival rate of patients after treatment. This article reviews the results of various AI-assisted diagnoses of EGC in recent years, including the identification of EGC, the determination of differentiation type and invasion depth, and the identification of borders. Although AI has a better application prospect in the early diagnosis of ECG, there are still major challenges, and the prospects and limitations of AI application need to be further discussed.
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Affiliation(s)
- Changda Lei
- Department of Gastroenterology, The First Affiliated Hospital of Soochow University, Suzhou, China
- Suzhou Medical College, Soochow University, Suzhou, China
| | - Wenqiang Sun
- Suzhou Medical College, Soochow University, Suzhou, China
- Department of Neonatology, Children’s Hospital of Soochow University, Suzhou, China
| | - Kun Wang
- Department of Gastroenterology, The First Affiliated Hospital of Soochow University, Suzhou, China
- Suzhou Medical College, Soochow University, Suzhou, China
| | - Ruixia Weng
- Department of Gastroenterology, The First Affiliated Hospital of Soochow University, Suzhou, China
- Suzhou Medical College, Soochow University, Suzhou, China
| | - Xiuji Kan
- Department of Gastroenterology, The First Affiliated Hospital of Soochow University, Suzhou, China
- Suzhou Medical College, Soochow University, Suzhou, China
| | - Rui Li
- Department of Gastroenterology, The First Affiliated Hospital of Soochow University, Suzhou, China
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Liu J, Jiang W, Yu Y, Gong J, Chen G, Yang Y, Wang C, Sun D, Lu X. Applying machine learning to predict bowel preparation adequacy in elderly patients for colonoscopy: development and validation of a web-based prediction tool. Ann Med 2025; 57:2474172. [PMID: 40065741 PMCID: PMC11899208 DOI: 10.1080/07853890.2025.2474172] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/06/2024] [Revised: 02/12/2025] [Accepted: 02/20/2025] [Indexed: 03/14/2025] Open
Abstract
BACKGROUND Adequate bowel preparation is crucial for effective colonoscopy, especially in elderly patients who face a high risk of inadequate preparation. This study develops and validates a machine learning model to predict bowel preparation adequacy in elderly patients before colonoscopy. METHODS The study adhered to the TRIPOD AI guidelines. Clinical data from 471 elderly patients collected between February and December 2023 were utilized for developing and internally validating the model, while 221 patients' data from March to June 2024 were used for external validation. The Boruta algorithm was applied for feature selection. Models including logistic regression, light gradient boosting machines, support vector machines (SVM), decision trees, random forests, and extreme gradient boosting were evaluated using metrics such as AUC, accuracy, sensitivity, and specificity. The SHAP algorithm helped rank feature importance. A web-based application was developed using the Streamlit framework to enhance clinical usability. RESULTS The Boruta algorithm identified 7 key features. The SVM model excelled with an AUC of 0.895 (95% CI: 0.822-0.969), and high accuracy, sensitivity, and specificity. In external validation, the SVM model maintained robust performance with an AUC of 0.889. The SHAP algorithm further explained the contribution of each feature to model predictions. CONCLUSION The study developed an interpretable and practical machine learning model for predicting bowel preparation adequacy in elderly patients, facilitating early interventions to improve outcomes and reduce resource wastage.
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Affiliation(s)
- Jianying Liu
- Department of Gastroenterology and Hepatology, Zhongshan Hospital (Xiamen), Fudan University, Xiamen, China
| | - Wei Jiang
- Department of Gastroenterology and Hepatology, Zhongshan Hospital (Xiamen), Fudan University, Xiamen, China
- Department of Gastroenterology and Hepatology, Zhongshan Hospital, Fudan University, Shanghai, China
| | - Yahong Yu
- Department of Gastroenterology and Hepatology, Zhongshan Hospital (Xiamen), Fudan University, Xiamen, China
| | - Jiali Gong
- Department of Gastroenterology and Hepatology, Zhongshan Hospital (Xiamen), Fudan University, Xiamen, China
| | - Guie Chen
- Department of Gastroenterology and Hepatology, Zhongshan Hospital (Xiamen), Fudan University, Xiamen, China
| | - Yuxing Yang
- Department of Gastroenterology and Hepatology, Zhongshan Hospital (Xiamen), Fudan University, Xiamen, China
| | - Chao Wang
- Department of Gastroenterology and Hepatology, Zhongshan Hospital (Xiamen), Fudan University, Xiamen, China
| | - Dalong Sun
- Department of Gastroenterology and Hepatology, Zhongshan Hospital (Xiamen), Fudan University, Xiamen, China
- Department of Gastroenterology and Hepatology, Zhongshan Hospital, Fudan University, Shanghai, China
| | - Xuefeng Lu
- Department of Gastroenterology and Hepatology, Zhongshan Hospital (Xiamen), Fudan University, Xiamen, China
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Sun J, Shao Y, Jiang R, Qi T, Xun J, Shen Y, Zhang R, Qian L, Wang X, Liu L, Wang Z, Sun J, Tang Y, Song W, Xu S, Yang J, Chen Y, Tang YW, Lu H, Chen J. Monocyte distribution width (MDW) as a reliable diagnostic biomarker for sepsis in patients with HIV. Emerg Microbes Infect 2025; 14:2479634. [PMID: 40094401 PMCID: PMC11948362 DOI: 10.1080/22221751.2025.2479634] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2024] [Revised: 03/02/2025] [Accepted: 03/11/2025] [Indexed: 03/19/2025]
Abstract
Sepsis is a leading cause of death among patients with HIV, but early diagnosis remains a challenge. This study evaluates the diagnostic performance of monocyte distribution width (MDW) in detecting sepsis in patients with HIV. A prospective observational study was conducted at Shanghai Public Health Center, involving 488 hospitalized patients with HIV aged 18-65 between December 2022 and August 2023. MDW was measured at admission, and its diagnostic accuracy was compared with Sepsis-3 criteria. Survival rates on day 28 and 90 were also recorded. Additionally, five machine learning (ML) models were tested to enhance diagnostic efficacy. Of 488 subjects, 90 were in the sepsis group and 398 in the control group. MDW showed a diagnostic area under the curve (AUC) of 0.82, comparable to C-reactive protein (CRP) and Procalcitonin (PCT) with AUCs of 0.78 and 0.82, respectively. With a cut-off value of 25.25, MDW had a sensitivity of 0.83 and specificity of 0.76. The positive and negative predictive values were 44% and 95%, respectively. When MDW was combined with platelet count, serum albumin, and hemoglobin in a random forest model, the AUC improved to 0.931. The model achieved a sensitivity of 1.00 and specificity of 0.732. MDW is a useful diagnostic marker for sepsis in patients with HIV, with strong sensitivity and specificity. Combining MDW with other lab markers can further enhance diagnostic accuracy.Trial registration: ClinicalTrials.gov identifier: NCT05036928..
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Affiliation(s)
- Jinfeng Sun
- Department of Infection and Immunology, Shanghai Public Health Clinical Center, Fudan University, Shanghai, People’s Republic of China
| | - Yueming Shao
- Department of Infection and Immunology, Shanghai Public Health Clinical Center, Fudan University, Shanghai, People’s Republic of China
| | - Rui Jiang
- Department of Infection and Immunology, Shanghai Public Health Clinical Center, Fudan University, Shanghai, People’s Republic of China
| | - Tangkai Qi
- Department of Infection and Immunology, Shanghai Public Health Clinical Center, Fudan University, Shanghai, People’s Republic of China
| | - Jingna Xun
- Department of Infection and Immunology, Shanghai Public Health Clinical Center, Fudan University, Shanghai, People’s Republic of China
| | - Yinzhong Shen
- Department of Infection and Immunology, Shanghai Public Health Clinical Center, Fudan University, Shanghai, People’s Republic of China
| | - Renfang Zhang
- Department of Infection and Immunology, Shanghai Public Health Clinical Center, Fudan University, Shanghai, People’s Republic of China
| | - Liu Qian
- Medical Affairs Department, Beckman-Coulter, Danaher Corporation (China), Shanghai, People's Republic of China
| | - Xialin Wang
- Marketing Department, Beckman-Coulter, Danaher Corporation (China), Shanghai, People's Republic of China
| | - Li Liu
- Department of Infection and Immunology, Shanghai Public Health Clinical Center, Fudan University, Shanghai, People’s Republic of China
| | - Zhenyan Wang
- Department of Infection and Immunology, Shanghai Public Health Clinical Center, Fudan University, Shanghai, People’s Republic of China
| | - Jianjun Sun
- Department of Infection and Immunology, Shanghai Public Health Clinical Center, Fudan University, Shanghai, People’s Republic of China
| | - Yang Tang
- Department of Infection and Immunology, Shanghai Public Health Clinical Center, Fudan University, Shanghai, People’s Republic of China
| | - Wei Song
- Department of Infection and Immunology, Shanghai Public Health Clinical Center, Fudan University, Shanghai, People’s Republic of China
| | - Shuibao Xu
- Department of Infection and Immunology, Shanghai Public Health Clinical Center, Fudan University, Shanghai, People’s Republic of China
| | - Junyang Yang
- Department of Infection and Immunology, Shanghai Public Health Clinical Center, Fudan University, Shanghai, People’s Republic of China
| | - Youming Chen
- Department of Infection and Immunology, Shanghai Public Health Clinical Center, Fudan University, Shanghai, People’s Republic of China
| | - Yi-Wei Tang
- Medical Affairs Department, Danaher Corporation/Cepheid, New York, USA
- College of Public Health, Chongqing Medical University, Chongqing, People’s Republic of China
| | - Hongzhou Lu
- Department of Infectious Diseases, National Clinical Research Center for Infectious Diseases, Shenzhen Third People’s Hospital, Shenzhen, People’s Republic of China
| | - Jun Chen
- Department of Infection and Immunology, Shanghai Public Health Clinical Center, Fudan University, Shanghai, People’s Republic of China
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Wu Z, Rao C, Xie Y, Ye Z, Zhang Y, Ma Z, Su Z, Ye Z. GALR1 and PENK serve as potential biomarkers in invasive non-functional pituitary neuroendocrine tumours. Gene 2025; 950:149374. [PMID: 40024300 DOI: 10.1016/j.gene.2025.149374] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2024] [Revised: 02/24/2025] [Accepted: 02/26/2025] [Indexed: 03/04/2025]
Abstract
BACKGROUND Some nonfunctioning pituitary neuroendocrine tumor (NFPitNET) can show invasive growth, which increases the difficulty of surgery and indicates a poor prognosis. However, the molecular mechanism related to invasiveness remains to be further studied. This study is to screen and identify the characteristic biomarkers of invasive NFPitNETs. METHODS Based on the data of 73 NFPitNETs microarray chips in the GSE169498 dataset, this study used weighted gene co-expression network (WGCNA), differential expression analysis, protein-protein interaction (PPI) network analysis and various machine learning methods (XGBOOST, LASSO regression, random forest, support vector machine) to screen candidate biomarkers for invasive NFPitNET. Then, using gene set enrichment analysis (GSEA) to explore the differences in biological activities and signaling pathways between invasive NFPitNET and non-invasive NFPitNET. Single-sample GSEA (ssGSEA) was used to analyze key biomarkers-related signaling pathways. Finally, the expression and function of the key biomarkers were verified by q-RT PCR, immunohistochemical (IHC) experiments and in vitro experiments. RESULTS Combined with WGCNA and differential expression analysis, 128 high-expression and 85 low-expression candidate biomarkers were preliminarily obtained. PPI analysis and four machine learning algorithms further identified GALR1, PENK and HOXD9. The receiver operating characteristic (ROC) curve results showed that the three biomarkers had good predictive ability of invasiveness. After combining the validation set data, GALR1 and PENK were the final key biomarkers. Finally, PCR and IHC results verified the decreased expression of GALR1 and PENK in invasive NFPitNET and promotes proliferation and invasive ablity of pituitary tumor cells. CONCLUSION This study confirmed that the reduced expression of GALR1 and PENK is an important molecular feature of invasive NFPitNETs, which may play an important role in inhibiting the development of NFPitNET.
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Affiliation(s)
- Zerui Wu
- Department of Neurosurgery, Huashan Hospital, Shanghai Medical College, Fudan University, Shanghai 200040, China; National Center for Neurological Disorders, Huashan Hospital, Shanghai Medical College, Fudan University, Shanghai 200040, China
| | - Changjun Rao
- Department of Cell Biology, Beijing Neurosurgical Institute, Capital Medical University, Beijing, China; Department of Neurosurgery, The First Affiliated Hospital of Wenzhou Medical University, Zhejiang, China
| | - Yilin Xie
- Department of Neurosurgery, Huashan Hospital, Shanghai Medical College, Fudan University, Shanghai 200040, China; National Center for Neurological Disorders, Huashan Hospital, Shanghai Medical College, Fudan University, Shanghai 200040, China
| | - Zhen Ye
- Department of Neurosurgery, Huashan Hospital, Shanghai Medical College, Fudan University, Shanghai 200040, China; National Center for Neurological Disorders, Huashan Hospital, Shanghai Medical College, Fudan University, Shanghai 200040, China
| | - Yichao Zhang
- Department of Neurosurgery, Huashan Hospital, Shanghai Medical College, Fudan University, Shanghai 200040, China; National Center for Neurological Disorders, Huashan Hospital, Shanghai Medical College, Fudan University, Shanghai 200040, China
| | - Zengyi Ma
- Department of Neurosurgery, Huashan Hospital, Shanghai Medical College, Fudan University, Shanghai 200040, China; National Center for Neurological Disorders, Huashan Hospital, Shanghai Medical College, Fudan University, Shanghai 200040, China
| | - Zhipeng Su
- Department of Neurosurgery, The First Affiliated Hospital of Wenzhou Medical University, Zhejiang, China.
| | - Zhao Ye
- Department of Neurosurgery, Huashan Hospital, Shanghai Medical College, Fudan University, Shanghai 200040, China; National Center for Neurological Disorders, Huashan Hospital, Shanghai Medical College, Fudan University, Shanghai 200040, China.
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Rogalla P, Fratesi J, Kandel S, Patsios D, Khalvati F, Carey S. Development and Evaluation of an Automated Protocol Recommendation System for Chest CT Using Natural Language Processing With CLEVER Terminology Word Replacement. Can Assoc Radiol J 2025; 76:257-264. [PMID: 39315514 DOI: 10.1177/08465371241280219] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/25/2024] Open
Abstract
Purpose: To evaluate the clinical performance of a Protocol Recommendation System (PRS) automatic protocolling of chest CT imaging requests. Materials and Methods: 322 387 consecutive historical imaging requests for chest CT between 2017 and 2022 were extracted from a radiology information system (RIS) database containing 16 associated patient information values. Records with missing fields and protocols with <100 occurrences were removed, leaving 18 protocols for training. After freetext pre-processing and applying CLEVER terminology word replacements, the features of a bag-of-words model were used to train a multinomial logistic regression classifier. Four readers protocolled 300 clinically executed protocols (CEP) based on all clinically available information. After their selection was made, the PRS and CEP were unblinded, and the readers were asked to score their agreement (1 = severe error, 2 = moderate error, 3 = disagreement but acceptable, 4 = agreement). The ground truth was established by the readers' majority selection, a judge helped break ties. For the PRS and CEP, the accuracy and clinical acceptability (scores 3 and 4) were calculated. The readers' protocolling reliability was measured using Fleiss' Kappa. Results: Four readers agreed on 203/300 protocols, 3 on 82/300 cases, and in 15 cases, a judge was needed. PRS errors were found by the 4 readers in 1%, 2.7%, 1%, and 0.7% of the cases, respectively. The accuracy/clinical acceptability of the PRS and CEP were 84.3%/98.6% and 83.0%/99.3%, respectively. The Fleiss' Kappa for all readers and all protocols was 0.805. Conclusion: The PRS achieved similar accuracy to human performance and may help radiologists master the ever-increasing workload.
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Affiliation(s)
- Patrik Rogalla
- Joint Department of Medical Imaging, University of Toronto, Toronto, ON, Canada
| | - Jennifer Fratesi
- Joint Department of Medical Imaging, University of Toronto, Toronto, ON, Canada
| | - Sonja Kandel
- Joint Department of Medical Imaging, University of Toronto, Toronto, ON, Canada
| | - Demetris Patsios
- Joint Department of Medical Imaging, University of Toronto, Toronto, ON, Canada
| | - Farzad Khalvati
- Departments of Medical Imaging and Computer Science, University of Toronto, Toronto, ON, Canada
| | - Sean Carey
- Joint Department of Medical Imaging, University of Toronto, Toronto, ON, Canada
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Pacella D, De Simone A, Pisanu A, Pellino G, Selvaggi L, Murzi V, Locci E, Ciabatti G, Mastrangelo L, Jovine E, Rottoli M, Calini G, Cardelli S, Catena F, Vallicelli C, Bova R, Vigutto G, D'Acapito F, Ercolani G, Solaini L, Biloslavo A, Germani P, Colutta C, Lepiane P, Scaramuzzo R, Occhionorelli S, Lacavalla D, Sibilla MG, Olmi S, Uccelli M, Oldani A, Giordano A, Guagni T, Perini D, Pata F, Nardo B, Paglione D, Franco G, Donadon M, Di Martino M, Di Saverio S, Cardinali L, Travaglini G, Bruzzese D, Podda M. A systematic review of the predictive factors for the recurrence of acute pancreatitis. World J Emerg Surg 2025; 20:32. [PMID: 40221742 PMCID: PMC11994023 DOI: 10.1186/s13017-025-00601-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2024] [Accepted: 03/22/2025] [Indexed: 04/14/2025] Open
Abstract
PURPOSE Acute Pancreatitis (AP) is a prevalent clinical pancreatic disorder characterized by acute inflammation of the pancreas, frequently associated with biliary or alcoholic events. If not treated with cholecystectomy after the first episode, patients may experience a recurrence of AP, with consequent need for emergency surgery and increased risk of death. Analyzing the risk factors that may contribute to the recurrence of Biliary and Alcoholic Pancreatitis (BAP and AAP), future research can be driven toward new solutions for preventing and treating this pancreatic disease. METHODS A systematic review was conducted selecting studies from BiomedCentral, PubMed, Scopus and Web of Science by two independent reviewers. Publications were considered only if written in English in the time interval between January 2000 and June 2024 and investigated the risk factors for the recurrence of BAP and AAP. At the end of the selection, a quality assessment phase was conducted using the PROBAST tool. RESULTS In this systematic review, 8 articles were selected out of 6.945, involving a total sample of 11.271 patients of which 38.77% developed recurrence episodes. 37.5% of the included studies focus on recurrent acute biliary pancreatitis (RBAP), while 62.5% are dedicated to recurrent acute alcoholic pancreatitis (RAAP). The risk factors for the recurrence of AP showed a clear differentiation between the alcoholic and biliary etiology. Most of the considered studies adopted a retrospective design, characterized by a susceptibility to potential methodological biases. However, the trend indicated a more recent increase in prospective studies, together with a greater focus on identifying and understanding the possible risk factors associated with the recurrence of acute pancreatitis (RAP). This result highlighted the progress in the scientific approach toward a more rigorous and systematic assessment of the causes and dynamics that influence the recurrence of the disease. CONCLUSION Studies highlighted the importance of lifestyle factors, clinical complications, and surgical interventions that can impact the risk of biliary or alcoholic recurrent acute pancreatitis. Increased and systematic adoption of artificial intelligence-based tools could significantly impact future knowledge relating to the risks of recurrence and relative possibilities of prevention.
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Affiliation(s)
- Daniela Pacella
- Department of Public Health, University of Naples Federico II, Naples, Italy
| | - Adriano De Simone
- Department of Public Health, University of Naples Federico II, Naples, Italy
- Department of Electric Engineering and Information Technologies, University of Naples Federico II, Naples, Italy
| | - Adolfo Pisanu
- Emergency Surgery Unit, Department of Surgical Science, University of Cagliari, Cagliari, Italy
| | - Gianluca Pellino
- Department of Advanced Medical and Surgical Sciences, University of Campania "Luigi Vanvitelli", Naples, Italy
| | - Lucio Selvaggi
- Department of Advanced Medical and Surgical Sciences, University of Campania "Luigi Vanvitelli", Naples, Italy
| | - Valentina Murzi
- Emergency Surgery Unit, Department of Surgical Science, University of Cagliari, Cagliari, Italy
| | - Eleonora Locci
- Emergency Surgery Unit, Department of Surgical Science, University of Cagliari, Cagliari, Italy
| | - Giulia Ciabatti
- Department of Medical and Surgical Science, University of Bologna, Maggiore Hospital, Bologna, Italy
| | - Laura Mastrangelo
- Department of Medical and Surgical Science, University of Bologna, Maggiore Hospital, Bologna, Italy
| | - Elio Jovine
- Department of Medical and Surgical Science, University of Bologna, Maggiore Hospital, Bologna, Italy
| | - Matteo Rottoli
- Department of Medical and Surgical Science, University of Bologna, Sant'Orsola Hospital, Bologna, Italy
- Alma Mater Studiorum, Università di Bologna, IRCCS Azienda Ospedaliero-Universitaria di Bologna, Bologna, Italy
| | - Giacomo Calini
- Department of Medical and Surgical Science, University of Bologna, Sant'Orsola Hospital, Bologna, Italy
| | - Stefano Cardelli
- Department of Medical and Surgical Science, University of Bologna, Sant'Orsola Hospital, Bologna, Italy
- Alma Mater Studiorum, Università di Bologna, IRCCS Azienda Ospedaliero-Universitaria di Bologna, Bologna, Italy
| | - Fausto Catena
- Department of General, Emergency and Trauma Surgery, Bufalini Hospital, Cesena, Italy
| | - Carlo Vallicelli
- Department of General, Emergency and Trauma Surgery, Bufalini Hospital, Cesena, Italy
| | - Raffaele Bova
- Department of General, Emergency and Trauma Surgery, Bufalini Hospital, Cesena, Italy
| | - Gabriele Vigutto
- Department of General, Emergency and Trauma Surgery, Bufalini Hospital, Cesena, Italy
| | - Fabrizio D'Acapito
- Department of Medical and Surgical Science, University of Bologna, Morgagni-Pierantoni Hospital Forlì, Forlì, Italy
| | - Giorgio Ercolani
- Department of Medical and Surgical Science, University of Bologna, Morgagni-Pierantoni Hospital Forlì, Forlì, Italy
| | - Leonardo Solaini
- Department of Medical and Surgical Science, University of Bologna, Morgagni-Pierantoni Hospital Forlì, Forlì, Italy
| | - Alan Biloslavo
- Department of General Surgery, Azienda Sanitaria Universitaria Giuliano Isontina, University of Trieste, Trieste, Italy
| | - Paola Germani
- Department of General Surgery, Azienda Sanitaria Universitaria Giuliano Isontina, University of Trieste, Trieste, Italy
| | - Camilla Colutta
- Department of General Surgery, Azienda Sanitaria Universitaria Giuliano Isontina, University of Trieste, Trieste, Italy
| | - Pasquale Lepiane
- Department of Surgery, San Paolo Hospital Civitavecchia, Rome, Italy
| | - Rosa Scaramuzzo
- Department of Surgery, San Paolo Hospital Civitavecchia, Rome, Italy
| | - Savino Occhionorelli
- Department of Morphology, Surgery and Experimental Medicine, University of Ferrara, Ferrara, Italy
| | - Domenico Lacavalla
- Department of Morphology, Surgery and Experimental Medicine, University of Ferrara, Ferrara, Italy
| | - Maria Grazia Sibilla
- Department of Morphology, Surgery and Experimental Medicine, University of Ferrara, Ferrara, Italy
| | - Stefano Olmi
- Department of General Surgery, San Donato Hospital Zingonia, Bergamo, Italy
| | - Matteo Uccelli
- Department of General Surgery, San Donato Hospital Zingonia, Bergamo, Italy
| | - Alberto Oldani
- Department of General Surgery, San Donato Hospital Zingonia, Bergamo, Italy
| | - Alessio Giordano
- Department of Emergency Surgery, Careggi Hospital, Firenze, Italy
| | - Tommaso Guagni
- Department of Emergency Surgery, Careggi Hospital, Firenze, Italy
| | - Davina Perini
- Department of Emergency Surgery, Careggi Hospital, Firenze, Italy
| | - Francesco Pata
- Department of Pharmacy, Health and Nutritional Sciences, University of Calabria, Rende, Italy
| | - Bruno Nardo
- Department of Pharmacy, Health and Nutritional Sciences, University of Calabria, Rende, Italy
| | - Daniele Paglione
- Department of Pharmacy, Health and Nutritional Sciences, University of Calabria, Rende, Italy
| | - Giusi Franco
- Department of Pharmacy, Health and Nutritional Sciences, University of Calabria, Rende, Italy
| | - Matteo Donadon
- Department of Health Science, University of Piemonte Orientale, Ospedale Maggiore della Carità, Novara, Italy
| | - Marcello Di Martino
- Department of Health Science, University of Piemonte Orientale, Ospedale Maggiore della Carità, Novara, Italy
| | - Salomone Di Saverio
- Department of Surgery, Madonna del Soccorso Hospital, San Benedetto del Tronto, Italy
| | - Luca Cardinali
- Department of Surgery, Madonna del Soccorso Hospital, San Benedetto del Tronto, Italy
| | - Grazia Travaglini
- Department of Surgery, Madonna del Soccorso Hospital, San Benedetto del Tronto, Italy
| | - Dario Bruzzese
- Department of Public Health, University of Naples Federico II, Naples, Italy
| | - Mauro Podda
- Emergency Surgery Unit, Department of Surgical Science, University of Cagliari, Cagliari, Italy.
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Hu G, Niu W, Ge J, Xuan J, Liu Y, Li M, Shen H, Ma S, Li Y, Li Q. Identification of thyroid cancer biomarkers using WGCNA and machine learning. Eur J Med Res 2025; 30:244. [PMID: 40186253 PMCID: PMC11971869 DOI: 10.1186/s40001-025-02466-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2025] [Accepted: 03/17/2025] [Indexed: 04/07/2025] Open
Abstract
OBJECTIVE The incidence of thyroid cancer (TC) is increasing in China, largely due to overdiagnosis from widespread screening and improved ultrasound technology. Identifying precise TC biomarkers is crucial for accurate diagnosis and effective treatment. METHODS TC patient data were obtained from TCGA. DEGs were analyzed using DESeq2, and WGCNA identified gene modules associated with TC. Machine learning algorithms (XGBoost, LASSO, RF) identified key biomarkers, with ROC and AUC > 0.95 indicating strong diagnostic performance. Immune cell infiltration and biomarker correlation were analyzed using CIBERSORT. RESULTS Four key genes (P4HA2, TFF3, RPS6KA5, EYA1) were found as potential biomarkers. High P4HA2 expression was associated with suppressed anti-tumor immune responses and promoted disease progression. In vitro studies showed that P4HA2 upregulation increased TC cell growth and migration, while its suppression reduced these activities. CONCLUSION Through bioinformatics and experimental validation, we identified P4HA2 as a key potential thyroid cancer biomarker. This finding provides new molecular targets for diagnosis and treatment. P4HA2 has the potential to be a diagnostic or therapeutic target, which could have significant implications for improving clinical outcomes in thyroid cancer patients.
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Affiliation(s)
- Gaofeng Hu
- Wenzhou Medical University, Wenzhou, Zhejiang, China
- Zhejiang Cancer Hospital, Hangzhou, Zhejiang, China
| | - Wenyuan Niu
- Zhejiang Cancer Hospital, Hangzhou, Zhejiang, China
- School of Pharmaceutical Sciences, Zhejiang Chinese Medical University, Hangzhou, Zhejiang, China
| | - Jiaming Ge
- Wenzhou Medical University, Wenzhou, Zhejiang, China
- Zhejiang Cancer Hospital, Hangzhou, Zhejiang, China
| | - Jie Xuan
- Wenzhou Medical University, Wenzhou, Zhejiang, China
- Zhejiang Cancer Hospital, Hangzhou, Zhejiang, China
| | - Yanyang Liu
- Wenzhou Medical University, Wenzhou, Zhejiang, China
- Zhejiang Cancer Hospital, Hangzhou, Zhejiang, China
| | - Mengjia Li
- Wenzhou Medical University, Wenzhou, Zhejiang, China
- Zhejiang Cancer Hospital, Hangzhou, Zhejiang, China
| | - Huize Shen
- Zhejiang Cancer Hospital, Hangzhou, Zhejiang, China
- School of Pharmaceutical Sciences, Zhejiang Chinese Medical University, Hangzhou, Zhejiang, China
| | - Shang Ma
- Zhejiang Cancer Hospital, Hangzhou, Zhejiang, China.
| | - Yuanqiang Li
- Zhejiang Cancer Hospital, Hangzhou, Zhejiang, China.
| | - Qinglin Li
- Wenzhou Medical University, Wenzhou, Zhejiang, China.
- Zhejiang Cancer Hospital, Hangzhou, Zhejiang, China.
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Bilgory A, Haimovich S, David L, Malonek D, Dekel BZ, Shechtman L, Groisman GM, Shalom-Paz E. Mid-infrared spectroscopy as a real-time diagnostic tool for chronic endometritis: A preliminary study. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2025; 330:125670. [PMID: 39765047 DOI: 10.1016/j.saa.2024.125670] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/16/2024] [Revised: 11/30/2024] [Accepted: 12/25/2024] [Indexed: 02/09/2025]
Abstract
RESEARCH QUESTION Can attenuated total reflection-Fourier transform infrared spectroscopy combined with machine learning techniques be used to develop a real-time diagnostic modality for chronic endometritis by analysing endometrial biopsies obtained during hysteroscopy? DESIGN Women undergoing hysteroscopy for infertility assessment were enrolled in this prospective study from January 2020 to March 2021. Endometrial biopsies were evaluated using a spectrophotometer, and subsequently via histopathology, including immunohistochemical staining for the multiple myeloma oncogene-1 (MUM-1). Spectroscopy analyses of the positive and the negative chronic endometritis groups were compared across various cut-offs of MUM-1 positive cells per 10 high-power fields (HPF). Machine learning techniques were used to build discrimination models with Matlab and Unscrambler software packages. RESULTS Fifty-four women were recruited. Four of the 54 measured spectra were discarded due to high measurement noise. Fifty biopsies were finally assessed, and a discriminant model was developed using the Principal Component Analysis and Linear Discriminant Analysis techniques (machine learning). The model was evaluated for accuracy using different MUM-1 cut-offs. Distinct spectral disparities (p < 0.05) were observed between specimens negative or positive for chronic endometritis. When employing a cut-off of > 7 MUM-1 cells/10 HPF, the model differentiated positive and negative chronic endometritis with 84 % accuracy, 88.8 % sensitivity and 82.9 % specificity. CONCLUSIONS Our findings in this preliminary study support the potential availability of a bedside diagnostic tool based on a model developed using spectroscopy coupled with machine learning. This allowed us to diagnose chronic endometritis in real-time with 84% accuracy, facilitating immediate initiation of appropriate treatment.
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Affiliation(s)
- Asaf Bilgory
- IVF Unit, Hillel Yaffe Medical Center, Hadera, Israel; Rappaport Faculty of Medicine, Technion-Israel Institute of Technology, Haifa 3109601, Israel.
| | - Sergio Haimovich
- Rappaport Faculty of Medicine, Technion-Israel Institute of Technology, Haifa 3109601, Israel; Gynecology Ambulatory Surgery Unit, Hillel Yaffe Medical Center, Hadera, Israel
| | - Liron David
- Rappaport Faculty of Medicine, Technion-Israel Institute of Technology, Haifa 3109601, Israel; Gynecology Ambulatory Surgery Unit, Hillel Yaffe Medical Center, Hadera, Israel
| | - Dov Malonek
- Department of Electrical & Computer Engineering, Ruppin Academic Center, Emek Hefer, Israel
| | - Ben Zion Dekel
- Department of Electrical & Computer Engineering, Ruppin Academic Center, Emek Hefer, Israel
| | - Lea Shechtman
- Rappaport Faculty of Medicine, Technion-Israel Institute of Technology, Haifa 3109601, Israel; Department of Pathology, Hillel Yaffe Medical Center, Hadera, Israel
| | - Gabriel M Groisman
- Rappaport Faculty of Medicine, Technion-Israel Institute of Technology, Haifa 3109601, Israel; Department of Pathology, Hillel Yaffe Medical Center, Hadera, Israel
| | - Einat Shalom-Paz
- IVF Unit, Hillel Yaffe Medical Center, Hadera, Israel; Rappaport Faculty of Medicine, Technion-Israel Institute of Technology, Haifa 3109601, Israel
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Zhou Y, Zhan Y, Zhao J, Zhong L, Zou F, Zhu X, Zeng Q, Nan J, Gong L, Tan Y, Liu L. CT-based radiomics deep learning signatures for non-invasive prediction of metastatic potential in pheochromocytoma and paraganglioma: a multicohort study. Insights Imaging 2025; 16:81. [PMID: 40185919 PMCID: PMC11971077 DOI: 10.1186/s13244-025-01952-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2024] [Accepted: 03/11/2025] [Indexed: 04/07/2025] Open
Abstract
OBJECTIVES This study aimed to develop and validate CT-based radiomics deep learning signatures for the non-invasive prediction of metastatic potential in pheochromocytomas and paragangliomas (PPGLs). METHODS We conducted a retrospective analysis of 249 PPGL patients from three institutions, dividing them into training (n = 138), test1 (n = 71), and test2 (n = 40) sets. Based on the grading system for adrenal pheochromocytoma and paraganglioma (GAPP), patients were classified into low-risk (GAPP < 3) and high-risk (GAPP ≥ 3) groups. Radiomic features were extracted from CT venous phase images and modeled using six machine learning algorithms. The maximum 2D sections and 3D images of each tumor were input into four ResNet models to obtain predictive probabilities. Optimal models were selected based on receiver operating characteristic analysis and integrated with radiological features to develop a combined model, which was evaluated on external datasets, and explored prognostic information. RESULTS The support vector machine radiomics and 2D ResNet-50 models demonstrated good performance. By integrating these two models with intratumoral necrosis features, we constructed a combined model that achieved high accuracy, with area under the curve (AUC) values of 0.90 for the training, 0.86 for the test1, and 0.88 for the test2 sets. This model effectively stratified patients based on metastasis-free survival (p = 0.003). Its predictive ability remains robust below the 6 cm threshold, with AUC values exceeding 0.87 across all datasets. CONCLUSIONS The combined model can predict the metastatic potential of PPGL in the preoperative stage, providing a precise surgical strategy for pheochromocytoma regarding the 6 cm surgical threshold. CRITICAL RELEVANCE STATEMENT The combined model, established based on radiomic and deep learning signatures, shows potential for early preoperative prediction of metastatic potential in PPGL. KEY POINTS Metastatic potential of PPGL affects surgical approaches and prognosis. CT-based radiomics deep learning signatures can predict the metastatic potential in PPGL.3. The combined model's predictive ability remains robust below the 6-cm threshold. The combined model's predictive ability remains robust below the 6-cm threshold.
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Affiliation(s)
- Yongjie Zhou
- Department of Radiology, Jiangxi Cancer Hospital & Institute, Jiangxi Clinical Research Center for Cancer, The Second Affiliated Hospital of Nanchang Medical College, Nanchang, China
| | - Yuan Zhan
- Department of Pathology and Institute of Molecular Pathology, The First Affiliated Hospital, Jiangxi Medical College, Nanchang University, Nanchang, China
| | - Jinhong Zhao
- Department of Radiology, The Second Affiliated Hospital, Jiangxi Medical College, Nanchang University, Nanchang, China
| | - Linhua Zhong
- Department of Radiology, Jiangxi Cancer Hospital & Institute, Jiangxi Clinical Research Center for Cancer, The Second Affiliated Hospital of Nanchang Medical College, Nanchang, China
| | - Fei Zou
- Department of Radiology, Jiangxi Cancer Hospital & Institute, Jiangxi Clinical Research Center for Cancer, The Second Affiliated Hospital of Nanchang Medical College, Nanchang, China
| | - Xuechao Zhu
- Department of Radiology, Jiangxi Cancer Hospital & Institute, Jiangxi Clinical Research Center for Cancer, The Second Affiliated Hospital of Nanchang Medical College, Nanchang, China
| | - Qiao Zeng
- Department of Radiology, Jiangxi Cancer Hospital & Institute, Jiangxi Clinical Research Center for Cancer, The Second Affiliated Hospital of Nanchang Medical College, Nanchang, China
| | - Jiayu Nan
- Department of Radiology, Jiangxi Cancer Hospital & Institute, Jiangxi Clinical Research Center for Cancer, The Second Affiliated Hospital of Nanchang Medical College, Nanchang, China
| | - Lianggeng Gong
- Department of Radiology, The Second Affiliated Hospital, Jiangxi Medical College, Nanchang University, Nanchang, China
| | - Yongming Tan
- Department of Radiology, The First Affiliated Hospital, Jiangxi Medical College, Nanchang University, Nanchang, China.
| | - Lan Liu
- Department of Radiology, Jiangxi Cancer Hospital & Institute, Jiangxi Clinical Research Center for Cancer, The Second Affiliated Hospital of Nanchang Medical College, Nanchang, China.
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Lee S, Oh HJ, Yoo H, Kim CY. Machine Learning Insight: Unveiling Overlooked Risk Factors for Postoperative Complications in Gastric Cancer. Cancers (Basel) 2025; 17:1225. [PMID: 40227820 DOI: 10.3390/cancers17071225] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2025] [Revised: 03/30/2025] [Accepted: 04/02/2025] [Indexed: 04/15/2025] Open
Abstract
BACKGROUND Since postoperative complications after gastrectomy for gastric cancer are associated with poor clinical outcomes, it is important to predict and prepare for the occurrence of complications preoperatively. Conventional models for predicting complications have limitations, prompting interest in machine learning algorithms. Machine learning models have a superior ability to identify complex interactions among variables and nonlinear relationships, potentially revealing new risk factors. This study aimed to explore previously overlooked risk factors for postoperative complications and compare machine learning models with linear regression. MATERIALS AND METHODS We retrospectively reviewed data from 865 patients who underwent gastrectomy for gastric cancer from 2018 to 2022. A total of 85 variables, including demographics, clinical features, laboratory values, intraoperative parameters, and pathologic results, were used to conduct the machine learning model. The dataset was partitioned into 80% for training and 20% for validation. To identify the most accurate prediction model, missing data handling, variable selection, and hyperparameter tuning were performed. RESULTS Machine learning models performed notably well when using the backward elimination method and a moderate missing data strategy, achieving the highest area under the curve values (0.744). A total of 15 variables associated with postoperative complications were identified using a machine learning algorithm. Operation time was the most impactful variable, followed closely by pre-operative levels of albumin and mean corpuscular hemoglobin. Machine learning models, especially Random Forest and XGBoost, outperformed linear regression. CONCLUSIONS Machine learning, coupled with advanced variable selection techniques, showed promise in enhancing risk prediction of postoperative complications for gastric cancer surgery.
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Affiliation(s)
- Sejin Lee
- Department of Surgery, Jeonbuk National University Hospital, 20 Geonji-ro, Deokjin-gu, Jeonju 54907, Republic of Korea
- Research Institute of Clinical Medicine of Jeonbuk National University-Biomedical Research Institute of Jeonbuk National University Hospital, Jeonju 54907, Republic of Korea
| | - Hyo-Jung Oh
- Department of Library & Information Science, Jeonbuk National University, Jeonju 54896, Republic of Korea
| | - Hosuon Yoo
- Research Division for Data Analysis, Korea Institute of Science and Technology Information (KISTI), Daegu 41515, Republic of Korea
| | - Chan-Young Kim
- Department of Surgery, Jeonbuk National University Hospital, 20 Geonji-ro, Deokjin-gu, Jeonju 54907, Republic of Korea
- Research Institute of Clinical Medicine of Jeonbuk National University-Biomedical Research Institute of Jeonbuk National University Hospital, Jeonju 54907, Republic of Korea
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Liu Z, Jia S, Cao L. Using Machine Learning Methods to Develop Diagnostic and Prognostic mRNA Signatures for Pancreatic Cancer in Plasma Small Extracellular Vesicles. Dig Dis Sci 2025:10.1007/s10620-025-08867-6. [PMID: 40172749 DOI: 10.1007/s10620-025-08867-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/21/2024] [Accepted: 01/13/2025] [Indexed: 04/04/2025]
Abstract
BACKGROUND Pancreatic ductal adenocarcinoma (PDAC) is frequently diagnosed in advanced stage due to the absence of effective diagnostic biomarkers. Small extracellular vesicles (sEVs) have recently emerged as potential clinical biomarkers in liquid biopsy. Our study aimed to explore sEV mRNA biomarkers for PDAC diagnosis and identify relevant markers that could guide the prognosis of PDAC patients. METHODS We analyzed mRNA sequencing of plasma sEVs from 100 participants and employed four machine learning techniques to create and assess the diagnostic models. Partial plasma sEV mRNAs were identified by all four feature extraction methods and used to construct diagnostic model. We also evaluated the predictive value of the model for the survival prognosis of PDAC patients. RESULTS Combined with carbohydrate antigen 19-9 (CA19-9), the 4 sEV mRNAs diagnostic signature (d-signature) could well differentiate PDAC patients from non-PDAC individuals, healthy control individuals, and benign pancreatic disease patients with an area under the curve (AUC) of 0.902, 0.971, and 0.845 in training cohort and AUC of 0.803, 0.938, and 0.762 in validation cohort. Furthermore, Cox regression analysis indicated that the score constructed based on the sEV mRNA signature was an independent adverse prognostic factor for survival prognosis of PDAC. CONCLUSIONS Our study demonstrated the potential utility of the sEV mRNA d-signature in the diagnosis of PDAC via machine learning methods. Simultaneously, the score from this diagnostic model exhibited a significant correlation with adverse outcome in PDAC patients. This provided a novel non-invasive sEV mRNA signature for clinical diagnosis and prognostic evaluation of PDAC patients.
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Affiliation(s)
- Zhen Liu
- Department of General Surgery, School of Medicine, Sir Run Run Shaw Hospital, Zhejiang University, Hangzhou, 310016, China
| | - Shengnan Jia
- Department of General Surgery, School of Medicine, Sir Run Run Shaw Hospital, Zhejiang University, Hangzhou, 310016, China
| | - Liping Cao
- Department of General Surgery, School of Medicine, Sir Run Run Shaw Hospital, Zhejiang University, Hangzhou, 310016, China.
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Sitaras S, Tsolakis IA, Gelsini M, Tsolakis AI, Schwendicke F, Wolf TG, Perlea P. Applications of Artificial Intelligence in Dental Medicine: A Critical Review. Int Dent J 2025; 75:474-486. [PMID: 39843259 PMCID: PMC11976566 DOI: 10.1016/j.identj.2024.11.009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2024] [Accepted: 11/12/2024] [Indexed: 01/24/2025] Open
Abstract
INTRODUCTION Artificial intelligence (AI), including its subfields of machine learning and deep learning, is a branch of computer science and engineering focused on creating machines capable of tasks requiring human-like intelligence, such as visual perception, decision-making, and natural language processing. AI applications have become increasingly prevalent in dental medicine, generating high expectations as well as raising ethical and practical concerns. METHODS This critical review evaluates the current applications of AI in dentistry, identifying key perspectives, challenges, and limitations in ongoing AI research. RESULTS AI models have been applied across various dental specialties, supporting diagnosis, treatment planning, and decision-making, while also reducing the burden of repetitive tasks and optimizing clinical workflows. However, ethical complexities and methodological limitations, such as inconsistent data quality, bias risk, lack of transparency, and limited clinical validation, undermine the quality of AI studies and hinder the effective integration of AI into routine dental practice. CONCLUSIONS To improve AI research, studies must adhere to standardized methodological and ethical guidelines, particularly in data collection, while ensuring transparency, privacy, and accountability. Developing a comprehensive framework for producing robust, reproducible AI research and clinically validated technologies will facilitate the seamless integration of AI into clinical practice, benefiting both clinicians and patients by improving dental care.
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Affiliation(s)
| | - Ioannis A Tsolakis
- Department of Orthodontics, School of Dentistry, Aristotle University of Thessaloniki, Thessaloniki, Greece; Department of Orthodontics, C.W.R.U., Cleveland, Ohio, USA
| | | | - Apostolos I Tsolakis
- Department of Orthodontics, C.W.R.U., Cleveland, Ohio, USA; Department of Orthodontics, National and Kapodistrian University of Athens, School of Dentistry, Athens, Greece
| | - Falk Schwendicke
- Department of Conservative Dentistry and Periodontology, Ludwig-Maximilians-University (LMU), Munich, North Dakota, Germany
| | - Thomas Gerhard Wolf
- Department of Restorative, Preventive and Pediatric Dentistry, School of Dental Medicine, University of Bern, Bern, Switzerland; Department of Periodontology and Operative Dentistry, University Medical Center of the Johannes Gutenberg-University Mainz, Mainz, Germany.
| | - Paula Perlea
- Department of Endodontics, Carol Davila University of Medicine and Pharmacy, Bucharest, Romania
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Sibic O, Somuncu E, Yilmaz S, Avsar E, Bozdag E, Ozcan A, Aydin MO, Ozkan C. Diagnosis of Acute Appendicitis with Machine Learning-Based Computer Tomography: Diagnostic Reliability and Role in Clinical Management. J Laparoendosc Adv Surg Tech A 2025; 35:313-317. [PMID: 39967483 DOI: 10.1089/lap.2024.0374] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/20/2025] Open
Abstract
Purpose: Acute appendicitis (AA) is a common surgical emergency affecting 7-8% of the population. Timely diagnosis and treatment are crucial for preventing serious morbidity and mortality. Diagnosis typically involves physical examination, laboratory tests, ultrasonography, and computed tomography (CT). This study aimed to evaluate the effectiveness of artificial intelligence (AI) in analyzing CT images for the early diagnosis of AA and prevention of complications. Methods: CT images of patients who underwent surgery for AA at the General Surgery Clinic of Kanuni Sultan Suleyman Health Application and Research Center between January 1, 2019, and June 31, 2023, were analyzed. A total of 1200 CT images were evaluated using four different AI models. The model performance was assessed using a confusion matrix. Results: The median age of the patients was 28 years, with a similar sex distribution. No significant differences were observed in terms of age or sex (P = .168 and P = .881, respectively). Among the AI models, MobileNet v2 showed the highest accuracy (0.7908) and precision (0.8203), whereas Inception v3 had the highest F-score (0.7928). In the receiver operating characteristic analysis, MobileNet v2 achieved an area under the curve (AUC) of 0.8767. Conclusion: AI's role in daily life is expanding. In the present study, the highest sensitivity and specificity were 77% and 86%, respectively. Supporting CT imaging with AI systems can enhance the accuracy of AA diagnoses.
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Affiliation(s)
- Osman Sibic
- General Surgery Service, Derik State Hospital, Derik, Turkey
| | - Erkan Somuncu
- General Surgery Service, Kanuni Sultan Suleyman Training and Research Hospital, Istanbul, Turkey
| | - Serhan Yilmaz
- General Surgery Service, Bilkent City Hospital, Cankaya, Turkey
| | - Ercan Avsar
- Technical University of Denmark National Institute of Aquatic Resources, Lyngby, Denmark
| | - Emre Bozdag
- Gastroenterology Surgery Service, Kanuni Sultan Suleyman Training and Research Hospital, Istanbul, Turkey
| | - Adem Ozcan
- Surgical Oncology Service, Bilkent City Hospital, Cankaya, Turkey
| | | | - Cenk Ozkan
- General Surgery Service, Kanuni Sultan Suleyman Training and Research Hospital, Istanbul, Turkey
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Dai K, Tang D, Bao L, Li S, Chen N, Ye W, Song A, Liao S, Li T. Development and validation of a predictive model for seizure recurrence following discontinuation of antiseizure medication in children with epilepsy: a systematic review and meta-analysis, and prospective cohort study. EClinicalMedicine 2025; 82:103154. [PMID: 40134561 PMCID: PMC11932876 DOI: 10.1016/j.eclinm.2025.103154] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/18/2024] [Revised: 02/23/2025] [Accepted: 02/26/2025] [Indexed: 03/27/2025] Open
Abstract
Background Seizure relapse in pediatric patients with epilepsy after antiseizure medication (ASM) withdrawal is a critical concern, yet the risk factors are not fully understood. Identifying these factors is essential for personalized treatment planning. Methods In this systematic review and meta-analysis, and prospective cohort study, we conducted a meta-analysis of cohort studies to derive a predictive model for seizure recurrence post-ASM discontinuation, then validated it in a prospective cohort study. The derivation cohort was derived from a systematic, search of PubMed, Web of Science, Embase, and Cochrane Library (from inception to May 1,2024) for English-language cohort studies on risk factors for seizure recurrence after ASM withdrawal in pediatric epilepsy, focusing on children initiating ASM tapering with documented relapse, while excluding case reports, and non-pharmacological interventions. Risk factors were selected and weighted according to the statistical significance of pooled relative risks (RRs), with β coefficients derived from log-transformed RRs to establish weighted scores in the predictive model. The validation cohort included children with epilepsy enrolled between February 16, 2015 and November 15, 2024, from two Chinese hospitals. Inclusion criteria comprised first-time ASM withdrawal candidates aged <18 years with ≥24-month follow-up, while exclusion criteria focused on incomplete data, protocol deviations, and non-pharmacological interventions. This study is registered at https://www.medicalresearch.org.cn/ (MR-50-24-042059). Findings A total of 26 cohort studies were identified from the systematic review and included in the meta-analysis. The derivation cohort included 4080 children with epilepsy, of whom 959 (23.50%) experienced seizure recurrence. The predictive model identified nine significant risk factors: intellectual disability, abnormal neurological examination or motor deficit, history of febrile seizures, only focal onset seizures, overall number of ASM used, duration of epilepsy ≥3 years, abnormal electroencephalogram (EEG) at the start of ASM tapering, abnormal EEG after ASM tapering, and age at first seizure ≥10 years. β coefficients were derived from the logarithm of pooled relative risks for each factor and converted into weighted scores, yielding a maximum total risk score of 17. The validation cohort comprised 341 patients with a median follow-up duration of 2.84 (0.27-9.75) years, and 122 (35.8%) out of them had seizure relapses. The model demonstrated robust performance in the validation cohort, with an AUC of 0.85 (95% CI: 0.81-0.91), sensitivity of 0.74 (95% CI: 0.68-0.80), and specificity of 0.82 (95% CI: 0.75-0.89). Interpretation Our evidence-based predictive model offers a robust tool for estimating the risk of seizure recurrence in pediatric patients with epilepsy after ASM withdrawal, aiding clinicians in personalized treatment decisions. While this tool enhances personalized treatment decisions in epilepsy management, its predictive thresholds require external validation across diverse clinical settings and populations to ensure broad clinical applicability. Funding Chongqing Medical University (CQMU) Program for Youth Innovation in Future Medicine.
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Affiliation(s)
- Kunyu Dai
- Department of Rehabilitation, Children's Hospital of Chongqing Medical University, National Clinical Research Center for Child Health and Disorders, Ministry of Education Key Laboratory of Child Development and Disorders, Chongqing, 400014, China
- Chongqing Key Laboratory of Child Neurodevelopment and Cognitive Disorders, Chongqing, 400014, China
| | - Dan Tang
- Department of Rehabilitation, Children's Hospital of Chongqing Medical University, National Clinical Research Center for Child Health and Disorders, Ministry of Education Key Laboratory of Child Development and Disorders, Chongqing, 400014, China
- Chongqing Key Laboratory of Child Neurodevelopment and Cognitive Disorders, Chongqing, 400014, China
| | - Lishimeng Bao
- Qianxing Campus of Kunming Children's Hospital, Kunming City, Yunnan Province, 650100, China
| | - Shaojun Li
- Chongqing Key Laboratory of Child Neurodevelopment and Cognitive Disorders, Chongqing, 400014, China
- Department of Emergency Medicine, Children's Hospital of Chongqing Medical University, National Clinical Research Center for Child Health and Disorders, Ministry of Education Key Laboratory of Child Development and Disorders, Chongqing, 400014, China
| | - Ningning Chen
- Department of Rehabilitation, Children's Hospital of Chongqing Medical University, National Clinical Research Center for Child Health and Disorders, Ministry of Education Key Laboratory of Child Development and Disorders, Chongqing, 400014, China
- Chongqing Key Laboratory of Child Neurodevelopment and Cognitive Disorders, Chongqing, 400014, China
| | - Weitao Ye
- Qianxing Campus of Kunming Children's Hospital, Kunming City, Yunnan Province, 650100, China
| | - Anchao Song
- College of Public Health, Chongqing Medical University, Chongqing, 400016, China
| | - Shuang Liao
- Chongqing Key Laboratory of Child Neurodevelopment and Cognitive Disorders, Chongqing, 400014, China
- Department of Neurology, Children's Hospital of Chongqing Medical University, National Clinical Research Center for Child Health and Disorders, Ministry of Education Key Laboratory of Child Development and Disorders, Chongqing, 400014, China
| | - Tingsong Li
- Department of Rehabilitation, Children's Hospital of Chongqing Medical University, National Clinical Research Center for Child Health and Disorders, Ministry of Education Key Laboratory of Child Development and Disorders, Chongqing, 400014, China
- Chongqing Key Laboratory of Child Neurodevelopment and Cognitive Disorders, Chongqing, 400014, China
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Yang H, Liu J, Sun H. Risk prediction model for adult intolerance to enteral nutrition feeding - A literature review. Am J Med Sci 2025; 369:427-433. [PMID: 39617212 DOI: 10.1016/j.amjms.2024.11.012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2023] [Revised: 11/20/2024] [Accepted: 11/27/2024] [Indexed: 12/16/2024]
Abstract
Enteral nutrition is an important clinical nutritional supplementation method, especially for adult patients who are unable to eat normally or require additional nutritional support. However, many patients experience intolerance to enteral nutrition, such as delayed gastric emptying, bloating, and diarrhea, which not only affect the patient's nutritional status but also increase the risk of medical complications. In recent years, medical researchers have been dedicated to identifying and analyzing various factors that contribute to enteral nutrition intolerance, including the patient's disease status, nutritional formula, feeding method, and rate. In addition, research is also exploring the establishment of risk prediction models to more accurately predict which patients may develop enteral nutrition intolerance. These models typically combine clinical parameters, biomarkers, and patient individual characteristics, aiming to assist clinicians in better planning and adjusting nutritional treatment plans, thereby reducing the occurrence of intolerance events. This review summarizes the research progress on enteral nutrition intolerance in adult patients, with a focus on the latest developments in intolerance factors and risk prediction models, providing valuable guidance for clinical practice and helping improve patients' nutritional status and overall health.
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Affiliation(s)
- Hui Yang
- School of Nursing, Southwest Medical University, Luzhou, Sichuan 646000, China; The First Affiliated Hospital of Chengdu Medical College, Chengdu, Sichuan 610500, China
| | - Jinmei Liu
- The First Affiliated Hospital of Chengdu Medical College, Chengdu, Sichuan 610500, China
| | - Hongyan Sun
- School of Nursing, Southwest Medical University, Luzhou, Sichuan 646000, China.
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18
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Romano L, Manno A, Rossi F, Masedu F, Attanasio M, Vistoli F, Giuliani A. Statistical models versus machine learning approach for competing risks in proctological surgery. Updates Surg 2025; 77:333-341. [PMID: 39862313 PMCID: PMC11961508 DOI: 10.1007/s13304-025-02109-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2024] [Accepted: 01/17/2025] [Indexed: 01/27/2025]
Abstract
Clinical risk prediction models are ubiquitous in many surgical domains. The traditional approach to develop these models involves the use of regression analysis. Machine learning algorithms are gaining in popularity as an alternative approach for prediction and classification problems. They can detect non-linear relationships between independent and dependent variables and incorporate many of them. In our work, we aimed to investigate the potential role of machine learning versus classical logistic regression for the preoperative risk assessment in proctological surgery. We used clinical data from a nationwide audit: the database consisted of 1510 patients affected by Goligher's grade III hemorrhoidal disease who underwent elective surgery. We collected anthropometric, clinical, and surgical data and we considered ten predictors to evaluate model-predictive performance. The clinical outcome was the complication rate evaluated at 30-day follow-up. Logistic regression and three machine learning techniques (Decision Tree, Support Vector Machine, Extreme Gradient Boosting) were compared in terms of area under the curve, balanced accuracy, sensitivity, and specificity. In our setting, machine learning and logistic regression models reached an equivalent predictive performance. Regarding the relative importance of the input features, all models agreed in identifying the most important factor. Combining and comparing statistical analysis and machine learning approaches in clinical field should be a common ambition, focused on improving and expanding interdisciplinary cooperation.
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Affiliation(s)
- Lucia Romano
- Department of Biotechnological and Applied Clinical Sciences, University of L'Aquila, L'Aquila, Italy.
| | - Andrea Manno
- Department of Information Engineering, Computer Science and Mathematics, University of L'Aquila, L'Aquila, Italy
- Center of Excellence DEWS, University of L'Aquila, L'Aquila, Italy
| | - Fabrizio Rossi
- Department of Information Engineering, Computer Science and Mathematics, University of L'Aquila, L'Aquila, Italy
| | - Francesco Masedu
- Department of Biotechnological and Applied Clinical Sciences, University of L'Aquila, L'Aquila, Italy
| | - Margherita Attanasio
- Department of Biotechnological and Applied Clinical Sciences, University of L'Aquila, L'Aquila, Italy
| | - Fabio Vistoli
- Department of Biotechnological and Applied Clinical Sciences, University of L'Aquila, L'Aquila, Italy
| | - Antonio Giuliani
- Department of Biotechnological and Applied Clinical Sciences, University of L'Aquila, L'Aquila, Italy
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19
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Değer SU, Can H. A predictive study on HCV using automated machine learning models. Comput Biol Med 2025; 188:109897. [PMID: 39983359 DOI: 10.1016/j.compbiomed.2025.109897] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2024] [Revised: 02/04/2025] [Accepted: 02/18/2025] [Indexed: 02/23/2025]
Abstract
Hepatitis C virus (HCV) infection represents a significant contributor to chronic liver disease on a global scale. The prompt identification and management of HCV are imperative in order to avert complications and to maintain control over the disease. Nowadays, medical decision support systems that incorporate advanced diagnostic methods and effective treatment strategies are of great importance in order to make significant progress in the fight against HCV. Medical decision support systems have undergone a major evolution with the development of computer technologies. In the 2010s, the integration of big data and artificial intelligence technologies into medical decision support systems enabled rapid analysis of patient data. This has created significant synergies in the diagnostic and therapeutic approaches to various diseases. The ever-increasing volume of data on HCV infection offers opportunities to use machine learning techniques to diagnose and predict liver disorders. Although the implementation of machine learning necessitates a degree of proficiency in computer science, which frequently poses a challenge for healthcare practitioners, automated machine learning (AutoML) tools markedly mitigate this obstacle. Such tools empower users to construct highly effective machine learning models without requiring extensive technical expertise. In our investigation concerning HCV prediction, additional features were incorporated into the dataset sourced from the UCI Machine Learning Repository, and class imbalances were rectified. In our study on HCV prediction, which was conducted to address this deficiency, new features were added to the dataset obtained from the UCI Machine Learning Repository to address the deficiencies and inter-class imbalances were corrected. After this process, modeling was performed using 7 AutoML tools and high accuracy rates ranging from 99.29 % to 100 % were obtained. As an important result of this paper, these models may be regarded as a supplementary method for doctors in predicting Hepatitis C and its associated diseases.
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Affiliation(s)
- Serbun Ufuk Değer
- Kastamonu Vocational School, Kastamonu University, 37150, Kastamonu, Turkey.
| | - Hakan Can
- Kastamonu Vocational School, Kastamonu University, 37150, Kastamonu, Turkey.
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20
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Soldà G, Asselta R. Applying artificial intelligence to uncover the genetic landscape of coagulation factors. J Thromb Haemost 2025; 23:1133-1145. [PMID: 39798926 DOI: 10.1016/j.jtha.2024.12.030] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2024] [Revised: 12/20/2024] [Accepted: 12/26/2024] [Indexed: 01/15/2025]
Abstract
Artificial intelligence (AI) is rapidly advancing our ability to identify and interpret genetic variants associated with coagulation factor deficiencies. This review introduces AI, with a specific focus on machine learning (ML) methods, and examines its applications in the field of coagulation genetics over the past decade. We observed a significant increase in AI-related publications, with a focus on hemophilia A and B. ML approaches have shown promise in predicting the functional impact of genetic variants and establishing genotype-phenotype correlations, exemplified by tools like "Hema-Class" for factor VIII variants. However, some challenges remain, including the need to expand variant selection beyond missense mutations (which is now the standard of most studies). For the future, the integration of AI in calling, detecting, and interpreting genetic variants can significantly improve our ability to process large-scale genomic data. In this frame, we discuss various AI/ML-based tools for genetic variant detection and interpretation, highlighting their strengths and limitations. As the field evolves, the synergistic application of multiple AI models, coupled with rigorous validation strategies, will be crucial in advancing our understanding of coagulation disorders and for personalizing treatment approaches.
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Affiliation(s)
- Giulia Soldà
- Department of Biomedical Sciences, Humanitas University, Pieve Emanuele, Milan, Italy; IRCCS Humanitas Research Hospital, Medical Genetics and RNA Biology Unit, Rozzano, Milan, Italy
| | - Rosanna Asselta
- Department of Biomedical Sciences, Humanitas University, Pieve Emanuele, Milan, Italy; IRCCS Humanitas Research Hospital, Medical Genetics and RNA Biology Unit, Rozzano, Milan, Italy.
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21
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Sun Y, Li J, He H, Xing G, Liu Z, Meng Q, Xu M, Huang L, Pan Z, Liao J, Ji C. Stroke Management and Analysis Risk Tool (SMART): An interpretable clinical application for diabetes-related stroke prediction. Nutr Metab Cardiovasc Dis 2025; 35:103841. [PMID: 39939252 DOI: 10.1016/j.numecd.2024.103841] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/26/2024] [Revised: 11/27/2024] [Accepted: 12/19/2024] [Indexed: 02/14/2025]
Abstract
BACKGROUND AND AIMS The growing global burden of diabetes and stroke poses a significant public health challenge. This study aims to analyze factors and create an interpretable stroke prediction model for diabetic patients. METHODS AND RESULTS Data from 20,014 patients were collected from the Affiliated Drum Tower Hospital, Medical School of Nanjing University, between 2021 and 2022. After handling the missing values, feature engineering included LASSO, SVM-RFE, and multi-factor regression techniques. The dataset was split 8:2 for training and testing, with the Synthetic Minority Oversampling Technique (SMOTE) to balance classes. Various machine learning and deep learning techniques, such as Random Forest (RF) and deep neural networks (DNN), have been utilized for model training. SHAP and a dedicated website showed the interpretability and practicality of the model. This study identified 11 factors influencing stroke incidence, with the RF and DNN algorithms achieving AUC values of 0.95 and 0.91, respectively. The Stroke Management and Analysis Risk Tool (SMART) was developed for clinical use. PRIMARY ENDPOINT The predictive performance of SMART in assessing stroke risk in diabetic patients was evaluated using AUC. SECONDARY ENDPOINTS Evaluated accuracy (precision, recall, F1-score), interpretability via SHAP values, and clinical utility, emphasizing user interface. Statistical analysis of EHR data using univariate and multivariate methods, with model validation on a separate test set. CONCLUSIONS An interpretable stroke-predictive model was created for patients with diabetes. This model proposes that standard clinical and laboratory parameters can predict the stroke risk in individuals with diabetes.
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Affiliation(s)
- Yumeng Sun
- Department of Pharmacy, China Pharmaceutical University Nanjing Drum Tower Hospital, #639 Longmian Avenue, Jiangning District, Nanjing, 211198, Jiangsu Province, China; School of Basic Medicine and Clinical Pharmacy, China Pharmaceutical University, #639 Longmian Avenue, Jiangning District, Nanjing, 211198, Jiangsu Province, China
| | - Jiaxi Li
- Department of Pharmacy, China Pharmaceutical University Nanjing Drum Tower Hospital, #639 Longmian Avenue, Jiangning District, Nanjing, 211198, Jiangsu Province, China
| | - Haiyang He
- School of Science, China Pharmaceutical University, #639 Longmian Avenue, Jiangning District, Nanjing, 211198, Jiangsu Province, China
| | - Gaochang Xing
- School of Basic Medicine and Clinical Pharmacy, China Pharmaceutical University, #639 Longmian Avenue, Jiangning District, Nanjing, 211198, Jiangsu Province, China
| | - Zixuan Liu
- School of Science, China Pharmaceutical University, #639 Longmian Avenue, Jiangning District, Nanjing, 211198, Jiangsu Province, China
| | - Qingpeng Meng
- School of Basic Medicine and Clinical Pharmacy, China Pharmaceutical University, #639 Longmian Avenue, Jiangning District, Nanjing, 211198, Jiangsu Province, China
| | - Mingjun Xu
- School of Science, China Pharmaceutical University, #639 Longmian Avenue, Jiangning District, Nanjing, 211198, Jiangsu Province, China
| | - Letian Huang
- School of Basic Medicine and Clinical Pharmacy, China Pharmaceutical University, #639 Longmian Avenue, Jiangning District, Nanjing, 211198, Jiangsu Province, China
| | - Zhe Pan
- School of Basic Medicine and Clinical Pharmacy, China Pharmaceutical University, #639 Longmian Avenue, Jiangning District, Nanjing, 211198, Jiangsu Province, China
| | - Jun Liao
- School of Science, China Pharmaceutical University, #639 Longmian Avenue, Jiangning District, Nanjing, 211198, Jiangsu Province, China.
| | - Cheng Ji
- Department of Pharmacy, Nanjing Drum Tower Hospital, The Affiliated Hospital of Nanjing University Medical School, #321 Zhongshan Road, Gulou District, Nanjing, China.
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22
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Cohen J, Duong SQ, Arivazhagan N, Barris DM, Bebiya S, Castaldo R, Gayanilo M, Hopkins K, Kailas M, Kong G, Ma X, Marshall M, Paul EA, Tan M, Yau JL, Nadkarni GN, Ezon D. Machine Learning Quantification of Pulmonary Regurgitation Fraction from Echocardiography. Pediatr Cardiol 2025; 46:884-894. [PMID: 38730015 DOI: 10.1007/s00246-024-03511-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/15/2024] [Accepted: 04/23/2024] [Indexed: 05/12/2024]
Abstract
Assessment of pulmonary regurgitation (PR) guides treatment for patients with congenital heart disease. Quantitative assessment of PR fraction (PRF) by echocardiography is limited. Cardiac MRI (cMRI) is the reference-standard for PRF quantification. We created an algorithm to predict cMRI-quantified PRF from echocardiography using machine learning (ML). We retrospectively performed echocardiographic measurements paired to cMRI within 3 months in patients with ≥ mild PR from 2009 to 2022. Model inputs were vena contracta ratio, PR index, PR pressure half-time, main and branch pulmonary artery diastolic flow reversal (BPAFR), and transannular patch repair. A gradient boosted trees ML algorithm was trained using k-fold cross-validation to predict cMRI PRF by phase contrast imaging as a continuous number and at > mild (PRF ≥ 20%) and severe (PRF ≥ 40%) thresholds. Regression performance was evaluated with mean absolute error (MAE), and at clinical thresholds with area-under-the-receiver-operating-characteristic curve (AUROC). Prediction accuracy was compared to historical clinician accuracy. We externally validated prior reported studies for comparison. We included 243 subjects (median age 21 years, 58% repaired tetralogy of Fallot). The regression MAE = 7.0%. For prediction of > mild PR, AUROC = 0.96, but BPAFR alone outperformed the ML model (sensitivity 94%, specificity 97%). The ML model detection of severe PR had AUROC = 0.86, but in the subgroup with BPAFR, performance dropped (AUROC = 0.73). Accuracy between clinicians and the ML model was similar (70% vs. 69%). There was decrement in performance of prior reported algorithms on external validation in our dataset. A novel ML model for echocardiographic quantification of PRF outperforms prior studies and has comparable overall accuracy to clinicians. BPAFR is an excellent marker for > mild PRF, and has moderate capacity to detect severe PR, but more work is required to distinguish moderate from severe PR. Poor external validation of prior works highlights reproducibility challenges.
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Affiliation(s)
- Jennifer Cohen
- Department of Pediatrics, Icahn School of Medicine at Mount Sinai, New York, NY, USA
- Mount Sinai Kravis Children's Heart Center, The Mount Sinai Hospital, 1468 Madison Ave, Annenberg 3rd Floor, New York, NY, 10029, USA
| | - Son Q Duong
- Department of Pediatrics, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
- Mount Sinai Kravis Children's Heart Center, The Mount Sinai Hospital, 1468 Madison Ave, Annenberg 3rd Floor, New York, NY, 10029, USA.
- Charles Bronfman Institute for Personalized Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
- Mindich Child Health and Development Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
| | - Naveen Arivazhagan
- Charles Bronfman Institute for Personalized Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA
| | - David M Barris
- Department of Pediatrics, Icahn School of Medicine at Mount Sinai, New York, NY, USA
- Mount Sinai Kravis Children's Heart Center, The Mount Sinai Hospital, 1468 Madison Ave, Annenberg 3rd Floor, New York, NY, 10029, USA
| | - Surkhay Bebiya
- Department of Pediatrics, Icahn School of Medicine at Mount Sinai, New York, NY, USA
- Mount Sinai Kravis Children's Heart Center, The Mount Sinai Hospital, 1468 Madison Ave, Annenberg 3rd Floor, New York, NY, 10029, USA
| | - Rosalie Castaldo
- Mount Sinai Kravis Children's Heart Center, The Mount Sinai Hospital, 1468 Madison Ave, Annenberg 3rd Floor, New York, NY, 10029, USA
| | - Marjorie Gayanilo
- Department of Pediatrics, Icahn School of Medicine at Mount Sinai, New York, NY, USA
- Mount Sinai Kravis Children's Heart Center, The Mount Sinai Hospital, 1468 Madison Ave, Annenberg 3rd Floor, New York, NY, 10029, USA
| | - Kali Hopkins
- Department of Pediatrics, Icahn School of Medicine at Mount Sinai, New York, NY, USA
- Mindich Child Health and Development Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA
- Adult Congenital Heart Disease, Mount Sinai Heart, The Mount Sinai Hospital, New York, NY, USA
| | - Maya Kailas
- Department of Pediatrics, Icahn School of Medicine at Mount Sinai, New York, NY, USA
- Mount Sinai Kravis Children's Heart Center, The Mount Sinai Hospital, 1468 Madison Ave, Annenberg 3rd Floor, New York, NY, 10029, USA
| | - Grace Kong
- Department of Pediatrics, Icahn School of Medicine at Mount Sinai, New York, NY, USA
- Mount Sinai Kravis Children's Heart Center, The Mount Sinai Hospital, 1468 Madison Ave, Annenberg 3rd Floor, New York, NY, 10029, USA
| | - Xiye Ma
- Mount Sinai Kravis Children's Heart Center, The Mount Sinai Hospital, 1468 Madison Ave, Annenberg 3rd Floor, New York, NY, 10029, USA
| | - Molly Marshall
- Department of Pediatrics, Icahn School of Medicine at Mount Sinai, New York, NY, USA
- Mount Sinai Kravis Children's Heart Center, The Mount Sinai Hospital, 1468 Madison Ave, Annenberg 3rd Floor, New York, NY, 10029, USA
| | - Erin A Paul
- Department of Pediatrics, Icahn School of Medicine at Mount Sinai, New York, NY, USA
- Mount Sinai Kravis Children's Heart Center, The Mount Sinai Hospital, 1468 Madison Ave, Annenberg 3rd Floor, New York, NY, 10029, USA
| | - Melanie Tan
- Mount Sinai Kravis Children's Heart Center, The Mount Sinai Hospital, 1468 Madison Ave, Annenberg 3rd Floor, New York, NY, 10029, USA
| | - Jen Lie Yau
- Mount Sinai Kravis Children's Heart Center, The Mount Sinai Hospital, 1468 Madison Ave, Annenberg 3rd Floor, New York, NY, 10029, USA
| | - Girish N Nadkarni
- Charles Bronfman Institute for Personalized Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA
| | - David Ezon
- Department of Pediatrics, Icahn School of Medicine at Mount Sinai, New York, NY, USA
- Mount Sinai Kravis Children's Heart Center, The Mount Sinai Hospital, 1468 Madison Ave, Annenberg 3rd Floor, New York, NY, 10029, USA
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Song A, Yang W, Wang J, Cai Y, Cai L, Pang N, Yu R, Liu Z, Yang C, Jiang F. Application of ATR-FTIR spectroscopy and multivariate statistical analysis in cancer diagnosis. SLAS Technol 2025; 31:100253. [PMID: 39900180 DOI: 10.1016/j.slast.2025.100253] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2024] [Revised: 01/22/2025] [Accepted: 01/30/2025] [Indexed: 02/05/2025]
Abstract
Lung cancer is one of the most prevalent and lethal malignant tumors worldwide. Currently, clinical diagnosis primarily relies on chest X-ray examinations, histopathological analysis, and the detection of tumor markers in blood. However, each of these methods has inherent limitations. The current study aims to explore novel diagnostic approaches for lung cancer by employing attenuated total reflection-Fourier transform infrared (ATR-FTIR) spectroscopy in conjunction with multiple machine learning models. Fourier transform infrared spectroscopy can detect subtle differences in the material structures that reflect the carcinogenic process between lung cancer tissues and normal tissues. By applying principal component analysis (PCA) and partial least squares discriminant analysis (PLS-DA) to analyze infrared spectral data, these subtle differences can be amplified. The study revealed that the combination of spectral bands within the 3500-3000 cm-1 and 1600-1500 cm-1 ranges is particularly significant for differentiating between the two groups. Three classification models-Support Vector Machine (SVM), k-Nearest Neighbor (kNN), and Linear Discriminant Analysis (LDA)-were constructed for spectral analysis of various band combinations. The results indicated that in detecting lung cancer samples, the combination of the 3500-3000 cm-1 and 1600-1500 cm-1 bands offers significant advantages. The analysis of the receiver operating characteristic (ROC) curve demonstrated that the area under the curve (AUC) exceeded 0.95 for all models, with the LDA model achieving an accuracy rate of 99.4% in identifying lung cancer patients compared to healthy individuals. The findings suggest that the integration of ATR-FTIR spectroscopy with multiple machine learning models represents a promising auxiliary diagnostic method for clinical lung cancer diagnosis, enabling detection at the molecular level.
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Affiliation(s)
- Ao Song
- Jiangsu Key Laboratory of Regional Resource Exploitation and Medicinal Research, Huaiyin Institute of Technology, Huai'an 223003, China; Chongming Hospital Affiliated to Shanghai University of Medicine and Health Sciences, Shanghai 202150, China
| | - Wanli Yang
- Chongming Hospital Affiliated to Shanghai University of Medicine and Health Sciences, Shanghai 202150, China
| | - Jun Wang
- Chongming Hospital Affiliated to Shanghai University of Medicine and Health Sciences, Shanghai 202150, China
| | - Yisa Cai
- Jiangsu Key Laboratory of Regional Resource Exploitation and Medicinal Research, Huaiyin Institute of Technology, Huai'an 223003, China; Chongming Hospital Affiliated to Shanghai University of Medicine and Health Sciences, Shanghai 202150, China
| | - Lizheng Cai
- Chongming Hospital Affiliated to Shanghai University of Medicine and Health Sciences, Shanghai 202150, China; Shanghai University of Traditional Chinese Medicine, Shanghai 201203, China
| | - Nan Pang
- Chongming Hospital Affiliated to Shanghai University of Medicine and Health Sciences, Shanghai 202150, China
| | - Ruihua Yu
- Chongming Hospital Affiliated to Shanghai University of Medicine and Health Sciences, Shanghai 202150, China
| | - Zhikun Liu
- Jiangsu Key Laboratory of Regional Resource Exploitation and Medicinal Research, Huaiyin Institute of Technology, Huai'an 223003, China.
| | - Chao Yang
- Chongming Hospital Affiliated to Shanghai University of Medicine and Health Sciences, Shanghai 202150, China.
| | - Feng Jiang
- Chongming Hospital Affiliated to Shanghai University of Medicine and Health Sciences, Shanghai 202150, China.
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24
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Wada S, Sakuraba M, Nakai M, Suzuki T, Miyamoto Y, Noguchi T, Iwanaga Y. Long-term Major Adverse Cardiac Event Prediction by Computed Tomography-derived Plaque Measures and Clinical Parameters Using Machine Learning. Intern Med 2025; 64:1001-1008. [PMID: 39231681 DOI: 10.2169/internalmedicine.3566-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 09/06/2024] Open
Abstract
Objective The present study evaluated the usefulness of machine learning (ML) models with the coronary computed tomography imaging and clinical parameters for predicting major adverse cardiac events (MACEs). Methods The Nationwide Gender-specific Atherosclerosis Determinants Estimation and Ischemic Cardiovascular Disease Prospective Cohort study (NADESICO) of 1,187 patients with suspected coronary artery disease 50-74 years old was used to build a MACE prediction model. The ML random forest (RF) model was compared with a logistic regression analysis. The performance of the ML model was evaluated using the area under the curve (AUC) with the 95% confidence interval (CI). Results Among 1,178 patients from the NADESICO dataset, MACEs occurred in 103 (8.7%) patients during a median follow-up of 4.4 years. The AUC of the RF model for MACE prediction was 0.781 (95% CI: 0.670-0.870), which was significantly higher than that of the conventional logistic regression model [AUC, 0.750 (95% CI: 0.651-0.839)]. The important features in the RF model were coronary artery stenosis (CAS) at any site, CAS in the left anterior descending branch, HbA1c level, CAS in the right coronary artery, and sex. In the external validation cohort, the model accuracy of ensemble ML-RF models that were trained on and tuned using the NADESICO dataset was not similar [AUC: 0.635 (95% CI: 0.599-0.672)]. Conclusion The ML-RF model improved the long-term prediction of MACEs compared to the logistic regression model. However, the selected variables in the internal dataset were not highly predictive of the external dataset. Further investigations are required to validate the usefulness of this model.
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Affiliation(s)
- Shinichi Wada
- Department of Medical and Health Information Management, National Cerebral and Cardiovascular Center, Japan
- Department of Neurology, Kansai Electric Power Hospital, Japan
| | - Makino Sakuraba
- Technology Unit, AI Strategy Office, Softbank Corporation, Japan
| | - Michikazu Nakai
- Department of Medical and Health Information Management, National Cerebral and Cardiovascular Center, Japan
- Clinical Research Support Center, University of Miyazaki Hospital, Japan
| | - Takayuki Suzuki
- Technology Unit, AI Strategy Office, Softbank Corporation, Japan
| | - Yoshihiro Miyamoto
- Department of Medical and Health Information Management, National Cerebral and Cardiovascular Center, Japan
| | - Teruo Noguchi
- Department of Cardiology, National Cerebral and Cardiovascular Center, Japan
| | - Yoshitaka Iwanaga
- Department of Medical and Health Information Management, National Cerebral and Cardiovascular Center, Japan
- Department of Cardiology, Sakurabashi Watanabe Advanced Healthcare Hospital, Japan
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25
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Gadhachanda KR, Marsool Marsool MD, Bozorgi A, Ameen D, Nayak SS, Nasrollahizadeh A, Alotaibi A, Farzaei A, Keivanlou MH, Hassanipour S, Amini-Salehi E, Jonnalagadda AK. Artificial intelligence in cardiovascular procedures: a bibliometric and visual analysis study. Ann Med Surg (Lond) 2025; 87:2187-2203. [PMID: 40212154 PMCID: PMC11981337 DOI: 10.1097/ms9.0000000000003112] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2024] [Accepted: 02/18/2025] [Indexed: 04/13/2025] Open
Abstract
Background The integration of artificial intelligence (AI) into cardiovascular procedures has significantly advanced diagnostic accuracy, outcome prediction, and robotic-assisted surgeries. However, a comprehensive bibliometric analysis of AI's impact in this field is lacking. This study examines research trends, key contributors, and emerging themes in AI-driven cardiovascular interventions. Methods We retrieved relevant publications from the Web of Science Core Collection and analyzed them using VOSviewer, CiteSpace, and Biblioshiny to map research trends and collaborations. Results AI-related cardiovascular research has grown substantially from 1993 to 2024, with a sharp increase from 2020 to 2023, peaking at 93 publications in 2023. The USA (127 papers), China (79), and England (31) were the top contributors, with Harvard University leading institutional output (17 papers). Frontiers in Cardiovascular Medicine was the most prolific journal. Core research themes included "machine learning," "mortality," and "cardiac surgery," with emerging trends in "association," "implantation," and "aortic stenosis," underscoring AI's expanding role in predictive modeling and surgical outcomes. Conclusion AI demonstrates transformative potential in cardiovascular procedures, particularly in diagnostic imaging, predictive modeling, and patient management. This bibliometric analysis highlights the growing interest in AI applications and provides a framework for integrating AI into clinical workflows to enhance diagnostic accuracy, treatment strategies, and patient outcomes.
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Affiliation(s)
| | | | - Ali Bozorgi
- Tehran Heart Center, Tehran University of Medical Sciences, Tehran, Iran
| | - Daniyal Ameen
- Department of Internal Medicine, Yale New Haven Health Bridgeport Hospital, Bridgeport, Connecticut, USA
| | - Sandeep Samethadka Nayak
- Department of Internal Medicine, Yale New Haven Health Bridgeport Hospital, Bridgeport, Connecticut, USA
| | | | | | - Alireza Farzaei
- Shahid Beheshti University of Medical Sciences, Tehran, Iran
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26
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Zhao X, Shen X, Jia F, He X, Zhao D, Li P. Using machine learning models to identify severe subjective cognitive decline and related factors in nurses during the menopause transition: a pilot study. Menopause 2025; 32:295-305. [PMID: 39808112 DOI: 10.1097/gme.0000000000002500] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2025]
Abstract
OBJECTIVE This study aims to develop and validate a machine learning model for identifying individuals within the nursing population experiencing severe subjective cognitive decline (SCD) during the menopause transition, along with their associated factors. METHODS A secondary analysis was performed using cross-sectional data from 1,264 nurses undergoing the menopause transition. The data set was randomly split into training (75%) and validation sets (25%), with the Bortua algorithm employed for feature selection. Seven machine learning models were constructed and optimized. Model performance was assessed using area under the receiver operating characteristic curve, accuracy, sensitivity, specificity, and F1 score. Shapley Additive Explanations analysis was used to elucidate the weights and characteristics of various factors associated with severe SCD. RESULTS The average SCD score among nurses in the menopause transition was (5.38 ± 2.43). The Bortua algorithm identified 13 significant feature factors. Among the seven models, the support vector machine exhibited the best overall performance, achieving an area under the receiver operating characteristic curve of 0.846, accuracy of 0.789, sensitivity of 0.753, specificity of 0.802, and an F1 score of 0.658. The two variables most strongly associated with SCD were menopausal symptoms and the stage of menopause. CONCLUSIONS The machine learning models effectively identify individuals with severe SCD and the related factors associated with severe SCD in nurses during the menopause transition. These findings offer valuable insights for the management of cognitive health in women undergoing the menopause transition.
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Affiliation(s)
- Xiangyu Zhao
- From the School of Nursing and Rehabilitation, Shandong University, Jinan, Shandong, China
| | - Xiaona Shen
- From the School of Nursing and Rehabilitation, Shandong University, Jinan, Shandong, China
| | - Fengcai Jia
- Sleep Medicine Department 1, Shandong Mental Health Center, Jinan, Shandong, China
| | - Xudong He
- From the School of Nursing and Rehabilitation, Shandong University, Jinan, Shandong, China
| | - Di Zhao
- From the School of Nursing and Rehabilitation, Shandong University, Jinan, Shandong, China
| | - Ping Li
- From the School of Nursing and Rehabilitation, Shandong University, Jinan, Shandong, China
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Mi Y, Sun P. Machine learning-based prediction of hearing loss: Findings of the US NHANES from 2003 to 2018. Hear Res 2025; 461:109252. [PMID: 40187231 DOI: 10.1016/j.heares.2025.109252] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/17/2024] [Revised: 03/11/2025] [Accepted: 03/18/2025] [Indexed: 04/07/2025]
Abstract
The prevalence of hearing loss (HL) has emerged as an escalating public health concern globally. The objective of this study was to leverage data from the National Health and Nutritional Examination Survey (NHANES) to develop an interpretable predictive machine learning (ML) model for HL. In accordance with the established inclusion and exclusion criteria, a total of 2814 participants were randomly assigned to one of two distinct groups for the training and validation of the predictive models. We identified the most significant variables using Recursive Feature Elimination and constructed a HL prediction model through various ML models. The generalization ability of the models was evaluated via 10-fold cross-validation. Eight different models were utilized to develop the optimal prediction model for HL. Subsequently, three interpretable methods, Feature importance analysis, Generalized linear model (GLM) and Restricted cubic spline (RCS) were integrated into a pipeline and embedded in ML for model interpretation. In this study, the Random Forest (RF) exhibited superior performance across all evaluation metrics after balancing the data using the Synthetic Minority Oversampling Technique (SMOTE), particularly excelling in AUC, PR-AUC and F1 score. Feature importance analysis uncovered significant correlations between HL and top 10 features, including age, blood lead (Pb) level, urine thallium (Tl) level, BMI, total energy, urine antimon (Sb) level, vitamin E intake, urine cobalt (Co) level, calcium intake and urine cesium (Cs) level. Moreover, both univariate and multivariate GLMs identified blood Pb [OR (95 % CI):1.169 (1.037,1.311)] and vitamin E intake [OR (95 % CI):0.776 (0.641,0.928)] as the main features associated with HL. The RCS analysis further revealed that increased blood Pb level and decreased vitamin E intake correspond to a proportional rise in the anticipated risk of HL after adjusted by confounders. Our ML models identify key factors that, if validated by future studies, will have important implications for hearing conservation. Furthermore, these ML-based point-of-care prediction models will help overcome barriers to hearing healthcare and enable the efficient allocation of resources by accurately identifying individuals who are in dire need of hearing assessment.
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Affiliation(s)
- Yi Mi
- Department of Occupational Health & Toxicology, School of Public Health, Fudan University, Shanghai 200032, PR China
| | - Pin Sun
- Department of Occupational Health & Toxicology, School of Public Health, Fudan University, Shanghai 200032, PR China.
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Zhao YC, Wang Z, Zhao H, Yap NA, Wang R, Cheng W, Xu X, Ju LA. Sensing the Future of Thrombosis Management: Integrating Vessel-on-a-Chip Models, Advanced Biosensors, and AI-Driven Digital Twins. ACS Sens 2025; 10:1507-1520. [PMID: 40067156 DOI: 10.1021/acssensors.4c02764] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/29/2025]
Abstract
Thrombotic events, such as strokes and deep vein thrombosis, remain a significant global health burden, with traditional diagnostic methods often failing to capture the complex, patient-specific nuances of thrombosis risk. This Perspective explores the revolutionary potential of microengineered vessel-on-chip platforms in thrombosis research and personalized medicine. We discuss the evolution from basic microfluidic channels to advanced 3D-printed, patient-specific models that accurately replicate complex vascular geometries, incorporating all elements of Virchow's triad. Integrating these platforms with cutting-edge sensing technologies, including wearable ultrasonic devices and electrochemical biosensors, enables real-time monitoring of thrombosis-related parameters. Crucially, we highlight the transformative role of artificial intelligence and digital twin technology in leveraging vast patient-specific data collected from these models. This integration allows for the development of predictive algorithms and personalized digital twins, offering unprecedented thrombosis risk assessment, treatment optimization, and drug screening capabilities. The clinical relevance and validation of these models are examined, showcasing their potential to predict thrombotic events and guide personalized treatment strategies. While challenges in scalability, standardization, and regulatory approval persist, the convergence of vessel-on-chip platforms, advanced sensing, and AI-driven digital twins promises to revolutionize thrombosis management. This approach paves the way for a new era of precision cardiovascular care, offering noninvasive, predictive, and personalized strategies for thrombosis prevention and treatment, ultimately improving patient outcomes and reducing the global burden of cardiovascular diseases.
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Affiliation(s)
- Yunduo Charles Zhao
- School of Biomedical Engineering, The University of Sydney,Darlington,NSW 2008,Australia
- Charles Perkins Centre, The University of Sydney,Camperdown,NSW 2006,Australia
- The University of Sydney Nano Institute (Sydney Nano), The University of Sydney, Camperdown, NSW 2006, Australia
| | - Zihao Wang
- School of Biomedical Engineering, The University of Sydney,Darlington,NSW 2008,Australia
- The University of Sydney Nano Institute (Sydney Nano), The University of Sydney, Camperdown, NSW 2006, Australia
| | - Haimei Zhao
- School of Biomedical Engineering, The University of Sydney,Darlington,NSW 2008,Australia
| | - Nicole Alexis Yap
- School of Biomedical Engineering, The University of Sydney,Darlington,NSW 2008,Australia
| | - Ren Wang
- School of Chemical Engineering, University of New South Wales,Kensington,NSW 2052,Australia
| | - Wenlong Cheng
- School of Biomedical Engineering, The University of Sydney,Darlington,NSW 2008,Australia
| | - Xin Xu
- Department of Neurosurgery, Xuanwu Hospital, Capital Medical University, 45 Changchun Street, Beijing 100053, China
| | - Lining Arnold Ju
- School of Biomedical Engineering, The University of Sydney,Darlington,NSW 2008,Australia
- Charles Perkins Centre, The University of Sydney,Camperdown,NSW 2006,Australia
- The University of Sydney Nano Institute (Sydney Nano), The University of Sydney, Camperdown, NSW 2006, Australia
- Heart Research Institute, Camperdown, Newtown, NSW 2042, Australia
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Aravazhi PS, Gunasekaran P, Benjamin NZY, Thai A, Chandrasekar KK, Kolanu ND, Prajjwal P, Tekuru Y, Brito LV, Inban P. The integration of artificial intelligence into clinical medicine: Trends, challenges, and future directions. Dis Mon 2025:101882. [PMID: 40140300 DOI: 10.1016/j.disamonth.2025.101882] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/28/2025]
Abstract
BACKGROUND AND OBJECTIVES AI has emerged as a transformative force in clinical medicine, changing the diagnosis, treatment, and management of patients. Tools have been derived for working with ML, DL, and NLP algorithms to analyze large complex medical datasets with unprecedented accuracy and speed, thereby improving diagnostic precision, treatment personalization, and patient care outcomes. For example, CNNs have dramatically improved the accuracy of medical imaging diagnoses, and NLP algorithms have greatly helped extract insights from unstructured data, including EHRs. However, there are still numerous challenges that face AI integration into clinical workflows, including data privacy, algorithmic bias, ethical dilemmas, and problems with the interpretability of "black-box" AI models. These barriers have thus far prevented the widespread application of AI in health care, and its possible trends, obstacles, and future implications are necessary to be systematically explored. The purpose of this paper is, therefore, to assess the current trends in AI applications in clinical medicine, identify those obstacles that are hindering adoption, and identify possible future directions. This research hopes to synthesize evidence from other peer-reviewed articles to provide a more comprehensive understanding of the role that AI plays to advance clinical practices, improve patient outcomes, or enhance decision-making. METHODS A systematic review was done according to the PRISMA guidelines to explore the integration of Artificial Intelligence in clinical medicine, including trends, challenges, and future directions. PubMed, Cochrane Library, Web of Science, and Scopus databases were searched for peer-reviewed articles from 2014 to 2024 with keywords such as "Artificial Intelligence in Medicine," "AI in Clinical Practice," "Machine Learning in Healthcare," and "Ethical Implications of AI in Medicine." Studies focusing on AI application in diagnostics, treatment planning, and patient care reporting measurable clinical outcomes were included. Non-clinical AI applications and articles published before 2014 were excluded. Selected studies were screened for relevance, and then their quality was critically appraised to synthesize data reliably and rigorously. RESULTS This systematic review includes the findings of 8 studies that pointed out the transformational role of AI in clinical medicine. AI tools, such as CNNs, had diagnostic accuracy more than the traditional methods, particularly in radiology and pathology. Predictive models efficiently supported risk stratification, early disease detection, and personalized medicine. Despite these improvements, significant hurdles, including data privacy, algorithmic bias, and resistance from clinicians regarding the "black-box" nature of AI, had yet to be surmounted. XAI has emerged as an attractive solution that offers the promise to enhance interpretability and trust. As a whole, AI appeared promising in enhancing diagnostics, treatment personalization, and clinical workflows by dealing with systemic inefficiencies. CONCLUSION The transformation potential of AI in clinical medicine can transform diagnostics, treatment strategies, and efficiency. Overcoming obstacles such as concerns about data privacy, the danger of algorithmic bias, and difficulties with interpretability may pave the way for broader use and facilitate improvement in patient outcomes while transforming clinical workflows to bring sustainability into healthcare delivery.
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Affiliation(s)
| | | | | | - Andy Thai
- Internal Medicine, Alameda Health System, Highland Hospital, Oakland, USA
| | | | | | | | - Yogesh Tekuru
- RVM Institute of Medical Sciences and Research Center, Laxmakkapally, India
| | | | - Pugazhendi Inban
- Internal Medicine, St. Mary's General Hospital and Saint Clare's Health, NY, USA.
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30
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Xu HL, Li XY, Jia MQ, Ma QP, Zhang YH, Liu FH, Qin Y, Chen YH, Li Y, Chen XY, Xu YL, Li DR, Wang DD, Huang DH, Xiao Q, Zhao YH, Gao S, Qin X, Tao T, Gong TT, Wu QJ. AI-Derived Blood Biomarkers for Ovarian Cancer Diagnosis: Systematic Review and Meta-Analysis. J Med Internet Res 2025; 27:e67922. [PMID: 40126546 PMCID: PMC11976184 DOI: 10.2196/67922] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2024] [Revised: 01/06/2025] [Accepted: 01/22/2025] [Indexed: 03/25/2025] Open
Abstract
BACKGROUND Emerging evidence underscores the potential application of artificial intelligence (AI) in discovering noninvasive blood biomarkers. However, the diagnostic value of AI-derived blood biomarkers for ovarian cancer (OC) remains inconsistent. OBJECTIVE We aimed to evaluate the research quality and the validity of AI-based blood biomarkers in OC diagnosis. METHODS A systematic search was performed in the MEDLINE, Embase, IEEE Xplore, PubMed, Web of Science, and the Cochrane Library databases. Studies examining the diagnostic accuracy of AI in discovering OC blood biomarkers were identified. The risk of bias was assessed using the Quality Assessment of Diagnostic Accuracy Studies-AI tool. Pooled sensitivity, specificity, and area under the curve (AUC) were estimated using a bivariate model for the diagnostic meta-analysis. RESULTS A total of 40 studies were ultimately included. Most (n=31, 78%) included studies were evaluated as low risk of bias. Overall, the pooled sensitivity, specificity, and AUC were 85% (95% CI 83%-87%), 91% (95% CI 90%-92%), and 0.95 (95% CI 0.92-0.96), respectively. For contingency tables with the highest accuracy, the pooled sensitivity, specificity, and AUC were 95% (95% CI 90%-97%), 97% (95% CI 95%-98%), and 0.99 (95% CI 0.98-1.00), respectively. Stratification by AI algorithms revealed higher sensitivity and specificity in studies using machine learning (sensitivity=85% and specificity=92%) compared to those using deep learning (sensitivity=77% and specificity=85%). In addition, studies using serum reported substantially higher sensitivity (94%) and specificity (96%) than those using plasma (sensitivity=83% and specificity=91%). Stratification by external validation demonstrated significantly higher specificity in studies with external validation (specificity=94%) compared to those without external validation (specificity=89%), while the reverse was observed for sensitivity (74% vs 90%). No publication bias was detected in this meta-analysis. CONCLUSIONS AI algorithms demonstrate satisfactory performance in the diagnosis of OC using blood biomarkers and are anticipated to become an effective diagnostic modality in the future, potentially avoiding unnecessary surgeries. Future research is warranted to incorporate external validation into AI diagnostic models, as well as to prioritize the adoption of deep learning methodologies. TRIAL REGISTRATION PROSPERO CRD42023481232; https://www.crd.york.ac.uk/PROSPERO/view/CRD42023481232.
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Affiliation(s)
- He-Li Xu
- Department of Clinical Epidemiology, Shengjing Hospital of China Medical University, ShenYang, China
- Clinical Research Center, Shengjing Hospital of China Medical University, ShenYang, China
- Liaoning Key Laboratory of Precision Medical Research on Major Chronic Disease, Shengjing Hospital of China Medical University, ShenYang, China
| | - Xiao-Ying Li
- Department of Clinical Epidemiology, Shengjing Hospital of China Medical University, ShenYang, China
- Clinical Research Center, Shengjing Hospital of China Medical University, ShenYang, China
- Liaoning Key Laboratory of Precision Medical Research on Major Chronic Disease, Shengjing Hospital of China Medical University, ShenYang, China
| | - Ming-Qian Jia
- Department of Clinical Epidemiology, Shengjing Hospital of China Medical University, ShenYang, China
- Clinical Research Center, Shengjing Hospital of China Medical University, ShenYang, China
- Liaoning Key Laboratory of Precision Medical Research on Major Chronic Disease, Shengjing Hospital of China Medical University, ShenYang, China
- Department of Epidemiology, School of Public Health, China Medical University, ShenYang, China
| | - Qi-Peng Ma
- Department of Obstetrics and Gynecology, Shengjing Hospital of China Medical University, ShenYang, China
| | - Ying-Hua Zhang
- Department of Undergraduate, Shengjing Hospital of China Medical University, ShenYang, China
| | - Fang-Hua Liu
- Department of Clinical Epidemiology, Shengjing Hospital of China Medical University, ShenYang, China
- Clinical Research Center, Shengjing Hospital of China Medical University, ShenYang, China
- Liaoning Key Laboratory of Precision Medical Research on Major Chronic Disease, Shengjing Hospital of China Medical University, ShenYang, China
| | - Ying Qin
- Department of Clinical Epidemiology, Shengjing Hospital of China Medical University, ShenYang, China
- Clinical Research Center, Shengjing Hospital of China Medical University, ShenYang, China
- Liaoning Key Laboratory of Precision Medical Research on Major Chronic Disease, Shengjing Hospital of China Medical University, ShenYang, China
- Department of Epidemiology, School of Public Health, China Medical University, ShenYang, China
| | - Yu-Han Chen
- Department of Epidemiology, School of Public Health, China Medical University, ShenYang, China
- Department of Obstetrics and Gynecology, Shengjing Hospital of China Medical University, ShenYang, China
| | - Yu Li
- Department of Epidemiology, School of Public Health, China Medical University, ShenYang, China
- Department of Obstetrics and Gynecology, Shengjing Hospital of China Medical University, ShenYang, China
| | - Xi-Yang Chen
- Department of Clinical Epidemiology, Shengjing Hospital of China Medical University, ShenYang, China
- Clinical Research Center, Shengjing Hospital of China Medical University, ShenYang, China
- Liaoning Key Laboratory of Precision Medical Research on Major Chronic Disease, Shengjing Hospital of China Medical University, ShenYang, China
- Department of Epidemiology, School of Public Health, China Medical University, ShenYang, China
| | - Yi-Lin Xu
- Department of Clinical Epidemiology, Shengjing Hospital of China Medical University, ShenYang, China
- Clinical Research Center, Shengjing Hospital of China Medical University, ShenYang, China
- Liaoning Key Laboratory of Precision Medical Research on Major Chronic Disease, Shengjing Hospital of China Medical University, ShenYang, China
| | - Dong-Run Li
- Department of Clinical Epidemiology, Shengjing Hospital of China Medical University, ShenYang, China
- Clinical Research Center, Shengjing Hospital of China Medical University, ShenYang, China
- Liaoning Key Laboratory of Precision Medical Research on Major Chronic Disease, Shengjing Hospital of China Medical University, ShenYang, China
| | - Dong-Dong Wang
- Department of Clinical Epidemiology, Shengjing Hospital of China Medical University, ShenYang, China
- Clinical Research Center, Shengjing Hospital of China Medical University, ShenYang, China
- Liaoning Key Laboratory of Precision Medical Research on Major Chronic Disease, Shengjing Hospital of China Medical University, ShenYang, China
- Department of Epidemiology, School of Public Health, China Medical University, ShenYang, China
| | - Dong-Hui Huang
- Department of Clinical Epidemiology, Shengjing Hospital of China Medical University, ShenYang, China
- Clinical Research Center, Shengjing Hospital of China Medical University, ShenYang, China
- Liaoning Key Laboratory of Precision Medical Research on Major Chronic Disease, Shengjing Hospital of China Medical University, ShenYang, China
| | - Qian Xiao
- Department of Clinical Epidemiology, Shengjing Hospital of China Medical University, ShenYang, China
- Department of Obstetrics and Gynecology, Shengjing Hospital of China Medical University, ShenYang, China
| | - Yu-Hong Zhao
- Department of Clinical Epidemiology, Shengjing Hospital of China Medical University, ShenYang, China
- Clinical Research Center, Shengjing Hospital of China Medical University, ShenYang, China
- Liaoning Key Laboratory of Precision Medical Research on Major Chronic Disease, Shengjing Hospital of China Medical University, ShenYang, China
| | - Song Gao
- Department of Obstetrics and Gynecology, Shengjing Hospital of China Medical University, ShenYang, China
| | - Xue Qin
- Department of Obstetrics and Gynecology, Shengjing Hospital of China Medical University, ShenYang, China
| | - Tao Tao
- Department of Obstetrics and Gynecology, Shengjing Hospital of China Medical University, ShenYang, China
| | - Ting-Ting Gong
- Department of Obstetrics and Gynecology, Shengjing Hospital of China Medical University, ShenYang, China
| | - Qi-Jun Wu
- Department of Clinical Epidemiology, Shengjing Hospital of China Medical University, ShenYang, China
- Clinical Research Center, Shengjing Hospital of China Medical University, ShenYang, China
- Liaoning Key Laboratory of Precision Medical Research on Major Chronic Disease, Shengjing Hospital of China Medical University, ShenYang, China
- Department of Epidemiology, School of Public Health, China Medical University, ShenYang, China
- Department of Obstetrics and Gynecology, Shengjing Hospital of China Medical University, ShenYang, China
- NHC Key Laboratory of Advanced Reproductive Medicine and Fertility (China Medical University), National Health Commission, ShenYang, China
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Lu J, Le Y, Bi J. Constructing a disease-specific ceRNA coregulatory network for keratoconus diagnosis and landscape of the immune environment. Int Ophthalmol 2025; 45:115. [PMID: 40119981 DOI: 10.1007/s10792-025-03488-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2024] [Accepted: 03/06/2025] [Indexed: 03/25/2025]
Abstract
PURPOSE The early diagnosis of keratoconus (KC) is crucial for making treatment decisions. Therefore, the purpose of this study was to determine the potential disease-specific gene biomarker and landscape the immune environment in KC. METHODS The transcriptome data of KC was obtained from Gene Expression Omnibus (GEO) and ArrayExpress databases for next analysis. The differently expressed mRNAs, microRNAs and lncRNAs between KC and control groups were firstly identified and the disease-specific protein-protein interaction (PPI) network as well as competing endogenous RNA (ceRNA) coregulatory network were constructed to explore the underlying molecular mechanism of KC. Besides, ElasticNet algorithm was used to develop a diagnostic model and associated nomograms to improve diagnosis of KC. Finally, multiple deconvolution methodologies were applied to decode the immune environment of KC patients. RESULTS In brief, we constructed the disease-specific PPI and ceRNA networks in KC through integrative analyses. The pathway enrichment manifested that these networks were significantly associated with lipopolysaccharide, chemokine and inflammatory related pathways. Based on the ceRNA network, we constructed a diagnostic model and associated nomogram which manifested a good performance for diagnosis of KC. Moreover, contrasted to control groups, we obviously observed that a distinct immune microenvironment existed in KC patients. Via single-cell sequencing analysis, we found that immune cells (Monocytes, Macrophages, and T cells) were strongly connected with corneal cells in KC patients. CONCLUSIONS In sum, we systematically constructed a diagnostic model and associated nomogram which provided novel biomarkers for the early detection of KC. Besides, our study comprehensively displayed the immune microenvironment of KC which provided new insights for understanding the molecular mechanism of KC.
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Affiliation(s)
- Jianqun Lu
- Department of Ophthalmology, People's Hospital of Leshan, Leshan, Sichuan, China.
| | - Yuan Le
- Department of Ophthalmology, People's Hospital of Leshan, Leshan, Sichuan, China
| | - Juan Bi
- Department of Ophthalmology, People's Hospital of Leshan, Leshan, Sichuan, China
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32
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Glebov M, Lazebnik T, Katsin M, Orkin B, Berkenstadt H, Bunimovich-Mendrazitsky S. Predicting postoperative nausea and vomiting using machine learning: a model development and validation study. BMC Anesthesiol 2025; 25:135. [PMID: 40114048 PMCID: PMC11924648 DOI: 10.1186/s12871-025-02987-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2025] [Accepted: 02/26/2025] [Indexed: 03/22/2025] Open
Abstract
BACKGROUND Postoperative nausea and vomiting (PONV) is a frequently observed complication in patients undergoing surgery under general anesthesia. Moreover, it is a frequent cause of distress and dissatisfaction in the early postoperative period. Currently, the classical scores used for predicting PONV have not yielded satisfactory results. Therefore, prognostic models for the prediction of early and delayed PONV were developed in this study to achieve satisfactory predictive performance. METHODS The retrospective data of inpatient adult patients admitted to the post-anesthesia care unit after undergoing surgical procedures under general anesthesia at the Sheba Medical Center, Israel, between September 1, 2018, and September 1, 2023, were used in this study. An ensemble model of machine-learning algorithms trained on the data of 35,003 patients was developed. The k-fold cross-validation method was used followed by splitting the data to train and test sets that optimally preserve the sociodemographic features of the patients. RESULTS Among the 35,003 patients, early and delayed PONV were observed in 1,340 (3.82%) and 6,582 (18.80%) patients, respectively. The proposed PONV prediction models correctly predicted early and delayed PONV in 83.6% and 74.8% of cases, respectively, outperforming the second-best PONV prediction score (Koivuranta score) by 13.0% and 10.4%, respectively. Feature importance analysis revealed that the performance of the proposed prediction tools aligned with previous clinical knowledge, indicating their utility. CONCLUSIONS The machine learning-based models developed in this study enabled improved PONV prediction, thereby facilitating personalized care and improved patient outcomes.
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Affiliation(s)
- Maxim Glebov
- Department of Anesthesiology, Sheba Medical Center, Derech Sheba 2, Ramat Gan, 52621, Israel.
| | - Teddy Lazebnik
- Department of Mathematics, Ariel University, Ariel, Israel
- Department of Cancer Biology, Cancer Institute, University College London, London, UK
| | - Maksim Katsin
- Department of Anesthesiology, Sheba Medical Center, Derech Sheba 2, Ramat Gan, 52621, Israel
| | - Boris Orkin
- Digital Medicine and Technology, Holon Institute of Technology, Holon, Israel
| | - Haim Berkenstadt
- Department of Anesthesiology, Sheba Medical Center, Derech Sheba 2, Ramat Gan, 52621, Israel
- Faculty of Medicine, Tel-Aviv University, Tel-Aviv, Israel
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Sciuto A, Fattori S, Abubaker F, Arjmand S, Catalano R, Chatzipapas K, Cuttone G, Farokhi F, Guarrera M, Hassan A, Incerti S, Kurmanova A, Oliva D, Pappalardo AD, Petringa G, Sakata D, Tran HN, Cirrone GAP. GANDALF: Generative ANsatz for DNA damage evALuation and Forecast. A neural network-based regression for estimating early DNA damage across micro-nano scales. Phys Med 2025; 133:104953. [PMID: 40117723 DOI: 10.1016/j.ejmp.2025.104953] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/17/2024] [Revised: 02/27/2025] [Accepted: 03/10/2025] [Indexed: 03/23/2025] Open
Abstract
PURPOSE This study aims to develop a comprehensive simulation framework to connect radiation effects from the microscopic to the nanoscopic scale. METHOD The process begins with a Geant4-DNA simulation based on the example "molecularDNA", producing a dataset of twelve different types of early DNA damages within an Escherichia coli (E. coli) bacterium, generated by proton irradiation at different kinetic energies, giving a nano-scale view of the particle-matter interaction. Then we pass to the micro-scale with a Geant4 simulation, based on the example "radiobiology", providing a microscopic view of proton interactions with matter through the Linear Energy Transfer (LET). Then GANDALF (Generative ANsatz for DNA damage evALuation and Forecast) Machine Learning (ML) toolkit, a Neural Network (NN)-based regression system, is employed to correlate the micro-scale LET data with the nano-scale occurrences of DNA damages in the E. coli bacterium. RESULTS The trained ML algorithm provides a practical tool to convert LET curves versus depth in a water phantom into DNA damage curves for twelve distinct types of DNA damage. To assess the performance, we evaluated the choice and optimization of the regression system based on its interpolation and extrapolation capabilities, ensuring the model could reliably predict DNA damage under various conditions. CONCLUSIONS Through the synergistic integration of Geant4, Geant4-DNA and ML, the study provides a tool to easily convert the results at the micro-scale of Geant4 to those at the nano-scale of Geant4-DNA without having to deal with the high CPU time requirements of the latter.
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Affiliation(s)
- Alberto Sciuto
- INFN Laboratori Nazionali del Sud, via S.Sofia 62, 95123 Catania, Italy
| | - Serena Fattori
- INFN Laboratori Nazionali del Sud, via S.Sofia 62, 95123 Catania, Italy.
| | - Farmesk Abubaker
- INFN Laboratori Nazionali del Sud, via S.Sofia 62, 95123 Catania, Italy; Charmo University, 46023, Chamchamal, Sulaymaniyah, Iraq
| | - Sahar Arjmand
- INFN Laboratori Nazionali del Sud, via S.Sofia 62, 95123 Catania, Italy
| | - Roberto Catalano
- INFN Laboratori Nazionali del Sud, via S.Sofia 62, 95123 Catania, Italy
| | | | - Giacomo Cuttone
- INFN Laboratori Nazionali del Sud, via S.Sofia 62, 95123 Catania, Italy
| | - Fateme Farokhi
- INFN Laboratori Nazionali del Sud, via S.Sofia 62, 95123 Catania, Italy
| | | | - Ali Hassan
- INFN Laboratori Nazionali del Sud, via S.Sofia 62, 95123 Catania, Italy
| | | | - Alma Kurmanova
- INFN Laboratori Nazionali del Sud, via S.Sofia 62, 95123 Catania, Italy; Dipartimento di Fisica e Astronomia "Ettore Majorana", Università di Catania, via S.Sofia 64, Catania, Italy
| | - Demetrio Oliva
- INFN Laboratori Nazionali del Sud, via S.Sofia 62, 95123 Catania, Italy
| | | | - Giada Petringa
- INFN Laboratori Nazionali del Sud, via S.Sofia 62, 95123 Catania, Italy
| | - Dousatsu Sakata
- Division of Health Sciences, Osaka University, Osaka 565-0871, Japan; School of Physics, University of Bristol, Bristol, UK; Centre For Medical Radiation Physics, University of Wollongong, Wollongong, Australia
| | - Hoang N Tran
- Univ. Bordeaux, CNRS, LP2I, UMR 5797, F-33170 Gradignan, France
| | - G A Pablo Cirrone
- INFN Laboratori Nazionali del Sud, via S.Sofia 62, 95123 Catania, Italy; Centro Siciliano di Fisica Nucleare e Struttura della Materia, via S. Sofia 64 Catania 95123, Italy
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Mercurio M, Denami F, Melissaridou D, Corona K, Cerciello S, Laganà D, Gasparini G, Minici R. Deep Learning Models to Detect Anterior Cruciate Ligament Injury on MRI: A Comprehensive Review. Diagnostics (Basel) 2025; 15:776. [PMID: 40150118 PMCID: PMC11941175 DOI: 10.3390/diagnostics15060776] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2025] [Revised: 03/14/2025] [Accepted: 03/17/2025] [Indexed: 03/29/2025] Open
Abstract
Magnetic resonance imaging (MRI) is routinely used to confirm the suspected diagnosis of anterior cruciate ligament (ACL) injury. Recently, many studies explored the role of artificial intelligence (AI) and deep learning (DL), a sub-category of AI, in the musculoskeletal field and medical imaging. The aim of this study was to review the current applications of DL models to detect ACL injury on MRI, thus providing an updated and critical synthesis of the existing literature and identifying emerging trends and challenges in the field. A total of 23 relevant articles were identified and included in the review. Articles originated from 10 countries, with China having the most contributions (n = 9), followed by the United State of America (n = 4). Throughout the article, we analyzed the concept of DL in ACL tears and provided examples of how these tools can impact clinical practice and patient care. DL models for MRI detection of ACL injury reported high values of accuracy, especially helpful for less experienced clinicians. Time efficiency was also demonstrated. Overall, the deep learning models have proven to be a valid resource, although still requiring technological developments for implementation in daily practice.
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Affiliation(s)
- Michele Mercurio
- Department of Orthopaedic and Trauma Surgery, Magna Graecia University, “Renato Dulbecco” University Hospital, 88100 Catanzaro, Italy; (M.M.); (G.G.)
- Research Center on Musculoskeletal Health, MusculoSkeletal Health@UMG, Magna Graecia University, 88100 Catanzaro, Italy
| | - Federica Denami
- Department of Orthopaedic and Trauma Surgery, Magna Graecia University, “Renato Dulbecco” University Hospital, 88100 Catanzaro, Italy; (M.M.); (G.G.)
| | - Dimitra Melissaridou
- 1st Department of Orthopaedic Surgery, National and Kapodistrian University of Athens, Attikon Hospital, 12462 Athens, Greece;
| | - Katia Corona
- Department of Medicine and Health Sciences “Vincenzo Tiberio”, University of Molise, 86100 Campobasso, Italy;
| | - Simone Cerciello
- School of Medicine, Saint Camillus University, 00131 Rome, Italy;
| | - Domenico Laganà
- Department of Experimental and Clinical Medicine, Magna Graecia University, 88100 Catanzaro, Italy;
- Radiology Unit, Department of Experimental and Clinical Medicine, Magna Graecia University, “Renato Dulbecco” University Hospital, 88100 Catanzaro, Italy;
| | - Giorgio Gasparini
- Department of Orthopaedic and Trauma Surgery, Magna Graecia University, “Renato Dulbecco” University Hospital, 88100 Catanzaro, Italy; (M.M.); (G.G.)
- Research Center on Musculoskeletal Health, MusculoSkeletal Health@UMG, Magna Graecia University, 88100 Catanzaro, Italy
| | - Roberto Minici
- Radiology Unit, Department of Experimental and Clinical Medicine, Magna Graecia University, “Renato Dulbecco” University Hospital, 88100 Catanzaro, Italy;
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Rawashdeh B, Al-abdallat H, Arpali E, Thomas B, Dunn TB, Cooper M. Machine learning in solid organ transplantation: Charting the evolving landscape. World J Transplant 2025; 15:99642. [PMID: 40104197 PMCID: PMC11612896 DOI: 10.5500/wjt.v15.i1.99642] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/26/2024] [Revised: 10/17/2024] [Accepted: 11/06/2024] [Indexed: 11/26/2024] Open
Abstract
BACKGROUND Machine learning (ML), a major branch of artificial intelligence, has not only demonstrated the potential to significantly improve numerous sectors of healthcare but has also made significant contributions to the field of solid organ transplantation. ML provides revolutionary opportunities in areas such as donor-recipient matching, post-transplant monitoring, and patient care by automatically analyzing large amounts of data, identifying patterns, and forecasting outcomes. AIM To conduct a comprehensive bibliometric analysis of publications on the use of ML in transplantation to understand current research trends and their implications. METHODS On July 18, a thorough search strategy was used with the Web of Science database. ML and transplantation-related keywords were utilized. With the aid of the VOS viewer application, the identified articles were subjected to bibliometric variable analysis in order to determine publication counts, citation counts, contributing countries, and institutions, among other factors. RESULTS Of the 529 articles that were first identified, 427 were deemed relevant for bibliometric analysis. A surge in publications was observed over the last four years, especially after 2018, signifying growing interest in this area. With 209 publications, the United States emerged as the top contributor. Notably, the "Journal of Heart and Lung Transplantation" and the "American Journal of Transplantation" emerged as the leading journals, publishing the highest number of relevant articles. Frequent keyword searches revealed that patient survival, mortality, outcomes, allocation, and risk assessment were significant themes of focus. CONCLUSION The growing body of pertinent publications highlights ML's growing presence in the field of solid organ transplantation. This bibliometric analysis highlights the growing importance of ML in transplant research and highlights its exciting potential to change medical practices and enhance patient outcomes. Encouraging collaboration between significant contributors can potentially fast-track advancements in this interdisciplinary domain.
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Affiliation(s)
- Badi Rawashdeh
- Division of Transplant Surgery, Medical College of Wisconsin, Milwaukee, WI 53202, United States
| | | | - Emre Arpali
- Division of Transplant Surgery, Medical College of Wisconsin, Milwaukee, WI 53202, United States
| | - Beje Thomas
- Department of Nephrology, Medical College of Wisconsin, Milwaukee, WI 53226, United States
| | - Ty B Dunn
- Division of Transplant Surgery, Medical College of Wisconsin, Milwaukee, WI 53202, United States
| | - Matthew Cooper
- Division of Transplant Surgery, Medical College of Wisconsin, Milwaukee, WI 53202, United States
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Shi H, You M, Li X, Zhang B, Gao J, Zhou D, Tu Y, Xia Z, Li J, Yang G, Liu Y, Ye H. Evaluation of factors associated with adult skeletal fluorosis in coal-burning type of endemic fluorosis and initial screening model based on machine learning in Guizhou, Southwest China. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2025; 293:118018. [PMID: 40073783 DOI: 10.1016/j.ecoenv.2025.118018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/23/2024] [Revised: 02/25/2025] [Accepted: 03/05/2025] [Indexed: 03/14/2025]
Abstract
Skeletal fluorosis caused by coal-burning type endemic fluorosis greatly affects the health of the population in the affected areas, but large-scale diagnostic work is limited by human and material resources, making it difficult to implement comprehensively. In this study, we investigate adults in coal-burning type endemic skeletal fluorosis areas in Guizhou. The study areas are selected by a comprehensive analysis of the detection rate of dental fluorosis in children aged 8-12 years in Guizhou for the year 2023. We collect information from questionnaires, physical examinations, and diagnostic X-ray Findings of Skeletal Fluorosis (XRF) in adults. The effective number of people investigated in this study was 2276, and the detection rate of XRF was 79.35 %. The top 5 relevant factors for skeletal fluorosis were age, educational background, height, Mini-Mental State Examination (MMSE) score and family population. Among the 8 models, random forest performed the best with an accuracy of 86.00 %, and the performance was more stable in the prevalence of different sizes, which provides a new idea for the prevention and treatment of skeletal fluorosis in coal-burning type of endemic fluorosis. In this study, the screening of the main correlates of XRF can provide an effective reference for the initial screening of skeletal fluorosis, and the practical application value of machine learning in this research field can be further explored.
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Affiliation(s)
- Huiyi Shi
- School of Public Heath, The Key Laboratory of Environmental Pollution Monitoring and Disease Control, Ministry of Education, Guizhou Medical University, Guiyang, Guizhou 561113, China; Collaborative Innovation Center for Prevention and Control of Endemic and Ethnic Regional Diseases Co-constructed by the Province and Ministry, Guizhou Medical University, Guiyang 561113, China
| | - Mingdan You
- School of Public Heath, The Key Laboratory of Environmental Pollution Monitoring and Disease Control, Ministry of Education, Guizhou Medical University, Guiyang, Guizhou 561113, China; Collaborative Innovation Center for Prevention and Control of Endemic and Ethnic Regional Diseases Co-constructed by the Province and Ministry, Guizhou Medical University, Guiyang 561113, China
| | - Xuan Li
- Guizhou Provincial Center for Disease Control and Prevention, Guiyang, Guizhou 550004, China
| | - Boyou Zhang
- Guizhou Provincial Center for Disease Control and Prevention, Guiyang, Guizhou 550004, China
| | - Jing Gao
- Guizhou Provincial Center for Disease Control and Prevention, Guiyang, Guizhou 550004, China
| | - Demei Zhou
- Guizhou Provincial Center for Disease Control and Prevention, Guiyang, Guizhou 550004, China
| | - Ying Tu
- Guizhou Provincial Center for Disease Control and Prevention, Guiyang, Guizhou 550004, China
| | - Zihao Xia
- School of Public Heath, The Key Laboratory of Environmental Pollution Monitoring and Disease Control, Ministry of Education, Guizhou Medical University, Guiyang, Guizhou 561113, China; Collaborative Innovation Center for Prevention and Control of Endemic and Ethnic Regional Diseases Co-constructed by the Province and Ministry, Guizhou Medical University, Guiyang 561113, China
| | - Jun Li
- School of Public Heath, The Key Laboratory of Environmental Pollution Monitoring and Disease Control, Ministry of Education, Guizhou Medical University, Guiyang, Guizhou 561113, China; Collaborative Innovation Center for Prevention and Control of Endemic and Ethnic Regional Diseases Co-constructed by the Province and Ministry, Guizhou Medical University, Guiyang 561113, China
| | - Guanghong Yang
- Guizhou Provincial Center for Disease Control and Prevention, Guiyang, Guizhou 550004, China
| | - Yining Liu
- School of Public Heath, The Key Laboratory of Environmental Pollution Monitoring and Disease Control, Ministry of Education, Guizhou Medical University, Guiyang, Guizhou 561113, China; Guizhou Provincial Center for Disease Control and Prevention, Guiyang, Guizhou 550004, China.
| | - Hongbing Ye
- Guizhou Provincial Center for Disease Control and Prevention, Guiyang, Guizhou 550004, China.
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Wu Y, Cheng Y, Xiao Y, Shang H, Ou R. The Role of Machine Learning in Cognitive Impairment in Parkinson Disease: Systematic Review and Meta-Analysis. J Med Internet Res 2025; 27:e59649. [PMID: 40153789 PMCID: PMC11992493 DOI: 10.2196/59649] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2024] [Revised: 11/04/2024] [Accepted: 01/30/2025] [Indexed: 03/30/2025] Open
Abstract
BACKGROUND Parkinson disease (PD) is a common neurodegenerative disease characterized by both motor and nonmotor symptoms. Cognitive impairment often occurs early in the disease and can persist throughout its progression, severely impacting patients' quality of life. The utilization of machine learning (ML) has recently shown promise in identifying cognitive impairment in patients with PD. OBJECTIVE This study aims to summarize different ML models applied to cognitive impairment in patients with PD and to identify determinants for improving diagnosis and predictive power for early detection of cognitive impairment. METHODS PubMed, Cochrane, Embase, and Web of Science were searched for relevant articles on March 2, 2024. The risk of bias was assessed using the Quality Assessment of Diagnostic Accuracy Studies-2 (QUADAS-2). Bivariate meta-analysis was used to estimate pooled sensitivity and specificity results, presented as odds ratio (OR) and 95% CI. A summary receiver operator characteristic (SROC) curve was used. RESULTS A total of 38 articles met the criteria, involving 8564 patients with PD and 1134 healthy controls. Overall, 120 models reported sensitivity and specificity, with mean values of 71.07% (SD 13.72%) and 77.01% (SD 14.31%), respectively. Predictors commonly used in ML models included clinical features, neuroimaging features, and other variables. No significant heterogeneity was observed in the bivariate meta-analysis, which included 12 studies. Using sensitivity as the metric, the combined sensitivity and specificity were 0.76 (95% CI 0.67-0.83) and 0.83 (95% CI 0.76-0.88), respectively. When specificity was used, the combined values were 0.77 (95% CI 0.65-0.86) and 0.76 (95% CI 0.63-0.85), respectively. The area under the curves of the SROC were 0.87 (95% CI 0.83-0.89) and 0.83 (95% CI 0.80-0.86) respectively. CONCLUSIONS Our findings provide a comprehensive summary of various ML models and demonstrate the effectiveness of ML as a tool for diagnosing and predicting cognitive impairment in patients with PD. TRIAL REGISTRATION PROSPERO CRD42023480196; https://www.crd.york.ac.uk/PROSPERO/view/CRD42023480196.
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Affiliation(s)
- Yanyun Wu
- Department of Neurology, West China Hospital of Sichuan University, Chengdu, China
| | - Yangfan Cheng
- Department of Neurology, West China Hospital of Sichuan University, Chengdu, China
| | - Yi Xiao
- Department of Neurology, West China Hospital of Sichuan University, Chengdu, China
| | - Huifang Shang
- Department of Neurology, West China Hospital of Sichuan University, Chengdu, China
| | - Ruwei Ou
- Department of Neurology, West China Hospital of Sichuan University, Chengdu, China
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Wang Q, Lu Y, Li M, Gao Z, Li D, Gao Y, Deng W, Wu J. Leveraging Whole-Genome Resequencing to Uncover Genetic Diversity and Promote Conservation Strategies for Ruminants in Asia. Animals (Basel) 2025; 15:831. [PMID: 40150358 PMCID: PMC11939356 DOI: 10.3390/ani15060831] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2025] [Revised: 02/28/2025] [Accepted: 03/12/2025] [Indexed: 03/29/2025] Open
Abstract
Whole-genome resequencing (WGRS) is a critical branch of whole-genome sequencing (WGS), primarily targeting species with existing reference genomes. By aligning sequencing data to the reference genome, WGRS enables precise detection of genetic variations in individuals or populations. As a core technology in genomic research, WGS holds profound significance in ruminant studies. It not only reveals the intricate structure of ruminant genomes but also provides essential data for deciphering gene function, variation patterns, and evolutionary processes, thereby advancing the exploration of ruminant genetic mechanisms. However, WGS still faces several challenges, such as incomplete and inaccurate genome assembly, as well as the incomplete annotation of numerous unknown genes or gene functions. Although WGS can identify a vast number of genomic variations, the specific relationships between these variations and phenotypes often remain unclear, which limits its potential in functional studies and breeding applications. By performing WGRS on multiple samples, these assembly challenges can be effectively addressed, particularly in regions with high repeat content or complex structural variations. WGRS can accurately identify subtle variations among different individuals or populations and further elucidate their associations with specific traits, thereby overcoming the limitations of WGS and providing more precise genetic information for functional research and breeding applications. This review systematically summarizes the latest applications of WGRS in the analysis of ruminant genetic structures, genetic diversity, economic traits, and adaptive traits, while also discussing the challenges faced by this technology. It aims to provide a scientific foundation for the improvement and conservation of ruminant genetic resources.
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Affiliation(s)
| | | | | | | | | | | | - Weidong Deng
- Yunnan Provincial Key Laboratory of Animal Nutrition and Feed, Faculty of Animal Science and Technology, Yunnan Agricultural University, Kunming 650201, China (Y.L.); (M.L.); (Z.G.); (D.L.); (Y.G.)
| | - Jiao Wu
- Yunnan Provincial Key Laboratory of Animal Nutrition and Feed, Faculty of Animal Science and Technology, Yunnan Agricultural University, Kunming 650201, China (Y.L.); (M.L.); (Z.G.); (D.L.); (Y.G.)
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Abedi E, Ewing M, Nemlander E, Hasselström J, Sjövall A, Carlsson AC, Rosenblad A. A machine learning tool for identifying metastatic colorectal cancer in primary care. Scand J Prim Health Care 2025:1-9. [PMID: 40079599 DOI: 10.1080/02813432.2025.2477155] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/04/2024] [Accepted: 03/03/2025] [Indexed: 03/15/2025] Open
Abstract
BACKGROUND Detection of colorectal cancer (CRC) is mainly achieved by clinical assessment. As new treatments become available for metastatic CRC (MCRC), it is important to accurately identify these patients. AIM To develop a predictive model for identifying MCRC in primary health care patients using diagnostic data analysed with machine learning. DESIGN AND SETTING A case-control study utilising data on primary health care visits for 146 patients >18 years old diagnosed with MCRC in the Västra Götaland Region, Sweden during 2011, and 577 sex-, age, and primary health care centre-matched controls. METHOD Stochastic gradient boosting was used to construct a model for predicting the presence of MCRC based on diagnostic codes from primary health care consultations during the year before index (diagnosis) date and number of consultations. Variable importance was estimated using the normalised relative influence (NRI) score. Risks of having MCRC were calculated using odds ratios of marginal effects (ORME). RESULTS The optimal model included 76 variables with non-zero influence, had an area under the curve of 76.5%, a sensitivity of 77.8%, and a specificity of 69.2%. The 10 most important variables had a combined NRI of 61.0%. Number of consultations during the year before index date had the highest NRI at 19.2%, with an ORME of 3.3. CONCLUSION A machine learning method based on primary health care consultation frequency and diagnoses may be used to identify important variables for predicting presence of MCRC. Both primary health care consultations and associated diagnostic codes need to be taken into consideration.
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Affiliation(s)
- Eliya Abedi
- Division of Family Medicine and Primary Care, Department of Neurobiology, Care Sciences and Society, Karolinska Institutet, Solna, Sweden
- Academic Primary Health Care Centre, Region Stockholm, Stockholm, Sweden
- Regional Cancer Centre Stockholm-Gotland, Region Stockholm, Stockholm, Sweden
| | - Marcela Ewing
- Department of Community Medicine and Public Health, Sahlgrenska Academy, Institute of Medicine, University of Gothenburg, Gothenburg, Sweden
| | - Elinor Nemlander
- Division of Family Medicine and Primary Care, Department of Neurobiology, Care Sciences and Society, Karolinska Institutet, Solna, Sweden
- Academic Primary Health Care Centre, Region Stockholm, Stockholm, Sweden
- Regional Cancer Centre Stockholm-Gotland, Region Stockholm, Stockholm, Sweden
| | - Jan Hasselström
- Division of Family Medicine and Primary Care, Department of Neurobiology, Care Sciences and Society, Karolinska Institutet, Solna, Sweden
- Academic Primary Health Care Centre, Region Stockholm, Stockholm, Sweden
| | - Annika Sjövall
- Regional Cancer Centre Stockholm-Gotland, Region Stockholm, Stockholm, Sweden
- Division of Coloproctology, Department of Pelvic Cancer, Karolinska University Hospital, Department of Molecular Medicine and Surgery, Karolinska Institutet, Stockholm, Sweden
| | - Axel C Carlsson
- Division of Family Medicine and Primary Care, Department of Neurobiology, Care Sciences and Society, Karolinska Institutet, Solna, Sweden
- Academic Primary Health Care Centre, Region Stockholm, Stockholm, Sweden
| | - Andreas Rosenblad
- Division of Family Medicine and Primary Care, Department of Neurobiology, Care Sciences and Society, Karolinska Institutet, Solna, Sweden
- Regional Cancer Centre Stockholm-Gotland, Region Stockholm, Stockholm, Sweden
- Department of Statistics, Uppsala University, Uppsala, Sweden
- Division of Clinical Diabetology and Metabolism, Department of Medical Sciences, Uppsala University, Uppsala, Sweden
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Fan S, Wang W, Che W, Xu Y, Jin C, Dong L, Xia Q. Nanomedicines Targeting Metabolic Pathways in the Tumor Microenvironment: Future Perspectives and the Role of AI. Metabolites 2025; 15:201. [PMID: 40137165 PMCID: PMC11943624 DOI: 10.3390/metabo15030201] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2025] [Revised: 02/19/2025] [Accepted: 02/27/2025] [Indexed: 03/27/2025] Open
Abstract
Background: Tumor cells engage in continuous self-replication by utilizing a large number of resources and capabilities, typically within an aberrant metabolic regulatory network to meet their own demands. This metabolic dysregulation leads to the formation of the tumor microenvironment (TME) in most solid tumors. Nanomedicines, due to their unique physicochemical properties, can achieve passive targeting in certain solid tumors through the enhanced permeability and retention (EPR) effect, or active targeting through deliberate design optimization, resulting in accumulation within the TME. The use of nanomedicines to target critical metabolic pathways in tumors holds significant promise. However, the design of nanomedicines requires the careful selection of relevant drugs and materials, taking into account multiple factors. The traditional trial-and-error process is relatively inefficient. Artificial intelligence (AI) can integrate big data to evaluate the accumulation and delivery efficiency of nanomedicines, thereby assisting in the design of nanodrugs. Methods: We have conducted a detailed review of key papers from databases, such as ScienceDirect, Scopus, Wiley, Web of Science, and PubMed, focusing on tumor metabolic reprogramming, the mechanisms of action of nanomedicines, the development of nanomedicines targeting tumor metabolism, and the application of AI in empowering nanomedicines. We have integrated the relevant content to present the current status of research on nanomedicines targeting tumor metabolism and potential future directions in this field. Results: Nanomedicines possess excellent TME targeting properties, which can be utilized to disrupt key metabolic pathways in tumor cells, including glycolysis, lipid metabolism, amino acid metabolism, and nucleotide metabolism. This disruption leads to the selective killing of tumor cells and disturbance of the TME. Extensive research has demonstrated that AI-driven methodologies have revolutionized nanomedicine development, while concurrently enabling the precise identification of critical molecular regulators involved in oncogenic metabolic reprogramming pathways, thereby catalyzing transformative innovations in targeted cancer therapeutics. Conclusions: The development of nanomedicines targeting tumor metabolic pathways holds great promise. Additionally, AI will accelerate the discovery of metabolism-related targets, empower the design and optimization of nanomedicines, and help minimize their toxicity, thereby providing a new paradigm for future nanomedicine development.
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Affiliation(s)
| | | | | | | | | | - Lei Dong
- State Key Laboratory of Molecular Medicine and Biological Diagnosis and Treatment (Ministry of Industry and Information Technology), Aerospace Center Hospital, School of Life Science, Beijing Institute of Technology, Beijing 100081, China; (S.F.); (W.W.); (W.C.); (Y.X.); (C.J.)
| | - Qin Xia
- State Key Laboratory of Molecular Medicine and Biological Diagnosis and Treatment (Ministry of Industry and Information Technology), Aerospace Center Hospital, School of Life Science, Beijing Institute of Technology, Beijing 100081, China; (S.F.); (W.W.); (W.C.); (Y.X.); (C.J.)
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Li L, Chen J, Guan T, Yu Z, Zhang J, Ji R, Li Z, Lei M, Zheng P, Li Y, Gao F. A Machine Learning Model for Real-Time Hypoglycemia Risk Prediction in Hospitalized Diabetic Patients: Development and Validation. RESEARCH SQUARE 2025:rs.3.rs-6171081. [PMID: 40162207 PMCID: PMC11952634 DOI: 10.21203/rs.3.rs-6171081/v1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/02/2025]
Abstract
Background Hypoglycemia is the main obstacle for achieving optimal glucose management in diabetic patients. Despite advances in understanding risk factors, current prediction models for hypoglycemia often rely on static variables and are not optimized for real-time risk assessment in hospitalized patients. This study aims to develop and validate a machine learning (ML)-based prediction model for inpatient hypoglycemia, integrating dynamic clinical data to improve accuracy and clinical utility. Methods and Findings We conducted a retrospective study of 37,966 inpatients with diabetes mellitus at Nanfang Hospital, affiliated with Southern Medical University, from January 2021 to December 2022. After applying the inclusion and exclusion criteria, 2,845 patients were included in the final analysis. Data preprocessing focused on analyzing potential predictors, including demographic characteristics, medication use, comorbidities, and laboratory parameters. Through a stepwise forward variable selection method based on XGBoost, we identified 10 optimal predictors. The cohort was randomly split into training and testing sets at an 8:2 ratio. Predictive performance was assessed via the area under the curve (AUC). Ten ML algorithms, including the support vector machine (SVM), CatBoost, XGBoost, random forest, transformer, gradient boosting decision tree (GBDT), TabNet, AdaBoost, light gradient boosting machine (LGBM), and decision tree algorithms, were evaluated. The CatBoost algorithm demonstrated the best performance, achieving an AUC of 0.85, a positive predictive value (PPV) of 0.75, and a negative predictive value (NPV) of 0.89. The model's decision-making utility was further validated through decision curve analysis and calibration curves, which revealed superior clinical applicability. The key predictors included BMI; insulin use; and laboratory markers such as HbA1c, creatinine, and triglycerides. Conclusions Our ML-based predictive model for inpatient hypoglycemia demonstrates robust performance and integrates readily available clinical parameters, offering significant potential for early risk identification and preventive intervention. Future research should focus on multicenter validation and real-time integration into clinical decision support systems to increase generalizability and precision. This study highlights the importance of dynamic data in improving hypoglycemia risk prediction and underscores the potential of ML in advancing diabetes care.
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Lim DYZ, Goh JCH, He Y, Koniman R, Yap H, Ke Y, Sim YE, Abdullah HR. Contrast-Induced Acute Kidney Injury in Lower Limb Percutaneous Transluminal Angioplasty: A Machine Learning Approach for Preoperative Risk Prediction. Ann Vasc Surg 2025; 115:163-172. [PMID: 40081525 DOI: 10.1016/j.avsg.2025.01.043] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2024] [Revised: 01/11/2025] [Accepted: 01/25/2025] [Indexed: 03/16/2025]
Abstract
BACKGROUND Contrast-induced acute kidney injury (CI-AKI) is a common complication of lower limb percutaneous transluminal angioplasty (PTA). Common risk models are based on cardiology cohorts for percutaneous coronary intervention. They include a mix of preoperative and perioperative variables, but do not include important information such as inflammatory parameters and preoperative medications. None make use of machine learning. We aimed to develop an accurate preoperative risk model for CI-AKI in lower limb PTA using machine learning methods and comparing these with conventional logistic regression. MATERIALS AND METHODS A retrospective cohort of 456 patients who underwent lower limb PTA as an isolated procedure from 2015 to 2019 was identified. Patients <21 years old, patients with a preoperative estimated glomerular filtration rate of <15 mL/min/1.73 m2 as defined by the modification of diet in renal disease, and patients with no valid preoperative or postoperative serum creatinine were excluded. Conventional logistic regression and a range of machine learning models were fitted (logistic regression with elastic-net penalty, random forests, gradient boosting machines, k-nearest neighbors, Support vector machines, and multilayer perceptron), using 5-fold cross-validation and grid search for hyperparameter selection. Area under receiver operating curve, area under precision-recall curve, F1 score, and the sensitivity and specificity were determined on the test set. Variable importance was examined using SHapley Additive exPlanation plots. RESULTS Machine learning models performed well, with the best performance by the k-nearest neighbors algorithm (area under receiver operating curve = 0.914, area under precision-recall curve = 0.809). Important variables identified by SHapley Additive exPlanation plot analysis included modification of diet in renal disease estimated glomerular filtration rate, haemoglobin, and inflammatory indices (neutrophil: lymphocyte ratio, red cell distribution width). CONCLUSION We developed machine learning models to accurately predict CI-AKI in patients undergoing elective lower limb PTA, using preoperative variables only. This model may be used for preoperative patient risk counseling by surgeons and anesthetists and may assist in identifying high-risk patients for further monitoring.
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Affiliation(s)
- Daniel Y Z Lim
- Health Service Research Unit, Medical Board, Singapore General Hospital, Singapore
| | - Jason C H Goh
- Department of Anaesthesiology, Singapore General Hospital, Singapore.
| | - Yingke He
- Department of Anaesthesiology, Singapore General Hospital, Singapore
| | - Riece Koniman
- Department of Renal Medicine, Singapore General Hospital, Singapore
| | - Haoyun Yap
- Department of Vascular Surgery, Singapore General Hospital, Singapore
| | - Yuhe Ke
- Department of Anaesthesiology, Singapore General Hospital, Singapore
| | - Yilin Eileen Sim
- Department of Anaesthesiology, Singapore General Hospital, Singapore
| | - Hairil Rizal Abdullah
- Department of Anaesthesiology, Singapore General Hospital, Singapore; Duke-NUS Medical School, Singapore
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Wu L, Liu Z, Huang H, Pan D, Fu C, Lu Y, Zhou M, Huang K, Huang T, Yang L. Development and validation of an interpretable machine learning model for predicting the risk of hepatocellular carcinoma in patients with chronic hepatitis B: a case-control study. BMC Gastroenterol 2025; 25:157. [PMID: 40069597 PMCID: PMC11899164 DOI: 10.1186/s12876-025-03697-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/14/2023] [Accepted: 02/13/2025] [Indexed: 03/14/2025] Open
Abstract
BACKGROUND The aim of this study was to develop and internally validate an interpretable machine learning (ML) model for predicting the risk of hepatocellular carcinoma (HCC) in patients with chronic hepatitis B (CHB) infection. METHODS We retrospectively collected clinical data from patients with HCC and CHB treated at the Fourth Affiliated Hospital of Guangxi Medical University from January 2022 to December 2022, including demographics, comorbidities, and laboratory parameters. The datasets were randomly divided into a training set (361 cases) and a validation set (155 cases) in a 7:3 ratio. Variables were screened using Least Absolute Shrinkage and Selection Operator (LASSO) and multifactor logistic regression. The prediction model of HCC risk in CHB patients was constructed based on five machine learning models, including logistic regression (LR), K-nearest neighbour (KNN), support vector machine (SVM), random forest (RF) and artificial neural network (ANN). Receiver operating characteristic (ROC) curve, calibration curve and decision curve analysis (DCA) were used to evaluate the predictive performance of the model in terms of identification, calibration and clinical application. The SHapley Additive exPlanation (SHAP) method was used to rank the importance of the features and explain the final model. RESULTS Among the five ML models constructed, the RF model has the best performance, and the RF model predicts the risk of HCC in patients with CHB in the training set [AUC: 0.996, 95% confidence interval (CI) (0.991-0.999)] and internal validation set [AUC: 0.993, 95% CI (0.986-1.000)]. It has high AUC, specificity, sensitivity, F1 score and low Brier score. Calibration showed good agreement between observed and predicted risks. The model yielded higher positive net benefits in DCA than when all participants were considered to be at high or low risk, indicating good clinical utility. In addition, the SHAP plot of the RF showed that age, basophil/lymphocyte ratio (BLR), D-Dimer, aspartate aminotransferase/alanine aminotransferase (AST/ALT), γ-glutamyltransferase (GGT) and alpha-fetoprotein (AFP) can help identify patients with CHB who are at high or low risk of developing HCC. CONCLUSION ML models can be used as a tool to predict the risk of HCC in patients with CHB. The RF model has the best predictive performance and helps clinicians to identify high-risk patients and intervene early to reduce or delay the occurrence of HCC. However, the model needs to be further improved through large sample studies.
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Affiliation(s)
- Linghong Wu
- Department of Occupational Health and Environmental Health, School of Public Health, Guangxi Medical University, Nanning, Guangxi, 530021, China
| | - Zengjing Liu
- Medical Records Data Center, The Fourth Affiliated Hospital of Guangxi Medical University, Liuzhou, Guangxi, 545000, China
| | - Hongyuan Huang
- Department of Occupational Health and Environmental Health, School of Public Health, Guangxi Medical University, Nanning, Guangxi, 530021, China
| | - Dongmei Pan
- Medical Records Data Center, The Fourth Affiliated Hospital of Guangxi Medical University, Liuzhou, Guangxi, 545000, China
| | - Cuiping Fu
- Medical Department, The Fourth Affiliated Hospital of Guangxi Medical University, Liuzhou, Guangxi, 545000, China
| | - Yao Lu
- Medical Department, The Fourth Affiliated Hospital of Guangxi Medical University, Liuzhou, Guangxi, 545000, China
| | - Min Zhou
- General Surgery, The Fourth Affiliated Hospital of Guangxi Medical University, Liuzhou, Guangxi, 545000, China
| | - Kaiyong Huang
- Department of Occupational Health and Environmental Health, School of Public Health, Guangxi Medical University, Nanning, Guangxi, 530021, China
| | - TianRen Huang
- Department of Epidemiology and Biostatistics, School of Public Health, Guangxi Medical University, Nanning, Guangxi, 530021, China.
| | - Li Yang
- Department of Occupational Health and Environmental Health, School of Public Health, Guangxi Medical University, Nanning, Guangxi, 530021, China.
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Hou J, Zhang S, Li S, Zhao Z, Zhao L, Zhang T, Liu W. CT-based radiomics models using intralesional and different perilesional signatures in predicting the microvascular density of hepatic alveolar echinococcosis. BMC Med Imaging 2025; 25:84. [PMID: 40065220 PMCID: PMC11895365 DOI: 10.1186/s12880-025-01612-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2024] [Accepted: 02/24/2025] [Indexed: 03/14/2025] Open
Abstract
OBJECTIVES To evaluate the performance of CT-based intralesional combined with different perilesional radiomics models in predicting the microvascular density (MVD) of hepatic alveolar echinococcosis (HAE). METHODS This study retrospectively analyzed preoperative CT data from 303 patients with HAE confirmed by surgical pathology (MVD positive, n = 182; MVD negative, n = 121). The patients were randomly divided into the training cohort (n = 242) and test cohort (n = 61) at a ratio of 8:2. The radiomics features were extracted from CT images on the portal vein phase. Four radiomics models were constructed based on gross lesion volume (GLV), gross combined 10 mm perilesional volume (GPLV10mm), gross combined 15 mm perilesional volume (GPLV15mm) and gross combined 20 mm perilesional volume (GPLV20mm). The best radiomics signature model and clinical features were combined to establish a nomogram. Receiver operating characteristic curve (ROC) and decision curve analysis (DCA) were used to evaluate the predictive performance of models. RESULTS Among the four radiomics models, the GPLV20mm model performed the highest prediction performance with the area under the curves (AUCs) in training cohort and test cohort was 0.876 and 0.802, respectively. The AUC of the clinical model was 0.753 in the training cohort and 0.699 in the test cohort. The AUC of the nomogram model based clinical and GPLV20mm radiomic signatures was 0.922 in the training cohort and 0.849 in the test cohort. The DCA showed that the nomogram had greater benefits among the three models. CONCLUSION CT-based GPLV20mm radiomics model can better predict MVD of HAE. The nomogram model showed the best predictive performance.
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Affiliation(s)
- Juan Hou
- Imaging Center, First Affiliated Hospital of Xinjiang Medical University, Urumqi, 830011, Xinjiang, China
| | - Simiao Zhang
- Imaging Center, First Affiliated Hospital of Xinjiang Medical University, Urumqi, 830011, Xinjiang, China
| | - Shouxian Li
- Imaging Center, First Affiliated Hospital of Xinjiang Medical University, Urumqi, 830011, Xinjiang, China
| | - Zicheng Zhao
- Canon Medical Systems (China), Beijing, 100015, China
| | - Longfei Zhao
- Canon Medical Systems (China), Beijing, 100015, China
| | - Tieliang Zhang
- Imaging Center, First Affiliated Hospital of Xinjiang Medical University, Urumqi, 830011, Xinjiang, China
| | - Wenya Liu
- Imaging Center, First Affiliated Hospital of Xinjiang Medical University, Urumqi, 830011, Xinjiang, China.
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Yang H, Xiu J, Yan W, Liu K, Cui H, Wang Z, He Q, Gao Y, Han W. Large Language Models as Tools for Molecular Toxicity Prediction: AI Insights into Cardiotoxicity. J Chem Inf Model 2025; 65:2268-2282. [PMID: 39982968 DOI: 10.1021/acs.jcim.4c01371] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/23/2025]
Abstract
The importance of drug toxicity assessment lies in ensuring the safety and efficacy of the pharmaceutical compounds. Predicting toxicity is crucial in drug development and risk assessment. This study compares the performance of GPT-4 and GPT-4o with traditional deep-learning and machine-learning models, WeaveGNN, MorganFP-MLP, SVC, and KNN, in predicting molecular toxicity, focusing on bone, neuro, and reproductive toxicity. The results indicate that GPT-4 is comparable to deep-learning and machine-learning models in certain areas. We utilized GPT-4 combined with molecular docking techniques to study the cardiotoxicity of three specific targets, examining traditional Chinese medicinal materials listed as both food and medicine. This approach aimed to explore the potential cardiotoxicity and mechanisms of action. The study found that components in Black Sesame, Ginger, Perilla, Sichuan Pagoda Tree Fruit, Galangal, Turmeric, Licorice, Chinese Yam, Amla, and Nutmeg exhibit toxic effects on cardiac target Cav1.2. The docking results indicated significant binding affinities, supporting the hypothesis of potential cardiotoxic effects.This research highlights the potential of ChatGPT in predicting molecular properties and its significance in medicinal chemistry, demonstrating its facilitation of a new research paradigm: with a data set, high-accuracy learning models can be generated without requiring computational knowledge or coding skills, making it accessible and easy to use.
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Affiliation(s)
- Hengzheng Yang
- Key Laboratory for Molecular Enzymology and Engineering of Ministry of Education, School of Life Science, Jilin University, 2699 Qianjin Street, Changchun 130012, China
- Edmond H. Fischer Signal Transduction Laboratory, School of Life Sciences, Jilin University, Changchun 130012, China
| | - Jian Xiu
- Key Laboratory for Molecular Enzymology and Engineering of Ministry of Education, School of Life Science, Jilin University, 2699 Qianjin Street, Changchun 130012, China
| | - Weiqi Yan
- Key Laboratory for Molecular Enzymology and Engineering of Ministry of Education, School of Life Science, Jilin University, 2699 Qianjin Street, Changchun 130012, China
| | - Kaifeng Liu
- Key Laboratory for Molecular Enzymology and Engineering of Ministry of Education, School of Life Science, Jilin University, 2699 Qianjin Street, Changchun 130012, China
| | - Huizi Cui
- Key Laboratory for Molecular Enzymology and Engineering of Ministry of Education, School of Life Science, Jilin University, 2699 Qianjin Street, Changchun 130012, China
- Edmond H. Fischer Signal Transduction Laboratory, School of Life Sciences, Jilin University, Changchun 130012, China
| | - Zhibang Wang
- Key Laboratory for Molecular Enzymology and Engineering of Ministry of Education, School of Life Science, Jilin University, 2699 Qianjin Street, Changchun 130012, China
| | - Qizheng He
- Key Laboratory for Molecular Enzymology and Engineering of Ministry of Education, School of Life Science, Jilin University, 2699 Qianjin Street, Changchun 130012, China
| | - Yilin Gao
- Key Laboratory for Molecular Enzymology and Engineering of Ministry of Education, School of Life Science, Jilin University, 2699 Qianjin Street, Changchun 130012, China
| | - Weiwei Han
- Key Laboratory for Molecular Enzymology and Engineering of Ministry of Education, School of Life Science, Jilin University, 2699 Qianjin Street, Changchun 130012, China
- Edmond H. Fischer Signal Transduction Laboratory, School of Life Sciences, Jilin University, Changchun 130012, China
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Yang L, Xuan R, Xu D, Sang A, Zhang J, Zhang Y, Ye X, Li X. Comprehensive integration of diagnostic biomarker analysis and immune cell infiltration features in sepsis via machine learning and bioinformatics techniques. Front Immunol 2025; 16:1526174. [PMID: 40129981 PMCID: PMC11931141 DOI: 10.3389/fimmu.2025.1526174] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2024] [Accepted: 02/14/2025] [Indexed: 03/26/2025] Open
Abstract
Introduction Sepsis, a critical medical condition resulting from an irregular immune response to infection, leads to life-threatening organ dysfunction. Despite medical advancements, the critical need for research into dependable diagnostic markers and precise therapeutic targets. Methods We screened out five gene expression datasets (GSE69063, GSE236713, GSE28750, GSE65682 and GSE137340) from the Gene Expression Omnibus. First, we merged the first two datasets. We then identified differentially expressed genes (DEGs), which were subjected to KEGG and GO enrichment analyses. Following this, we integrated the DEGs with the genes from key modules as determined by Weighted Gene Co-expression Network Analysis (WGCNA), identifying 262 overlapping genes. 12 core genes were subsequently selected using three machine-learning algorithms: random forest (RF), Least Absolute Shrinkage and Selection Operator (LASSO), and Support Vector Machine-Recursive Feature Elimination (SVW-RFE). The utilization of the receiver operating characteristic curve in conjunction with the nomogram model served to authenticate the discriminatory strength and efficacy of the key genes. CIBERSORT was utilized to evaluate the inflammatory and immunological condition of sepsis. Astragalus, Salvia, and Safflower are the primary elements of Xuebijing, commonly used in the clinical treatment of sepsis. Using the Traditional Chinese Medicine Systems Pharmacology Database and Analysis Platform (TCMSP), we identified the chemical constituents of these three herbs and their target genes. Results We found that CD40LG is not only one of the 12 core genes we identified, but also a common target of the active components quercetin, luteolin, and apigenin in these herbs. We extracted the common chemical structure of these active ingredients -flavonoids. Through docking analysis, we further validated the interaction between flavonoids and CD40LG. Lastly, blood samples were collected from healthy individuals and sepsis patients, with and without the administration of Xuebijing, for the extraction of peripheral blood mononuclear cells (PBMCs). By qPCR and WB analysis. We observed significant differences in the expression of CD40LG across the three groups. In this study, we pinpointed candidate hub genes for sepsis and constructed a nomogram for its diagnosis. Discussion This research not only provides potential diagnostic evidence for peripheral blood diagnosis of sepsis but also offers insights into the pathogenesis and disease progression of sepsis.
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Affiliation(s)
- Liuqing Yang
- Department of Anesthesiology, Zhongnan Hospital of Wuhan University, Wuhan, Hubei, China
- Department of Anesthesiology, Hubei Provincial Engineering Research Center of Minimally Invasive Cardiovascular Sugery, Wuhan, China
- Department of Anesthesiology, Wuhan Clinical Research Center for Minimally Invasive Treatment of Structural Heart Disease, Wuhan, China
| | - Rui Xuan
- Department of Anesthesiology, Zhongnan Hospital of Wuhan University, Wuhan, Hubei, China
- Department of Anesthesiology, Hubei Provincial Engineering Research Center of Minimally Invasive Cardiovascular Sugery, Wuhan, China
- Department of Anesthesiology, Wuhan Clinical Research Center for Minimally Invasive Treatment of Structural Heart Disease, Wuhan, China
| | - Dawei Xu
- Department of Anesthesiology, Zhongnan Hospital of Wuhan University, Wuhan, Hubei, China
- Department of Anesthesiology, Hubei Provincial Engineering Research Center of Minimally Invasive Cardiovascular Sugery, Wuhan, China
- Department of Anesthesiology, Wuhan Clinical Research Center for Minimally Invasive Treatment of Structural Heart Disease, Wuhan, China
| | - Aming Sang
- Department of Anesthesiology, Zhongnan Hospital of Wuhan University, Wuhan, Hubei, China
- Department of Anesthesiology, Hubei Provincial Engineering Research Center of Minimally Invasive Cardiovascular Sugery, Wuhan, China
- Department of Anesthesiology, Wuhan Clinical Research Center for Minimally Invasive Treatment of Structural Heart Disease, Wuhan, China
| | - Jing Zhang
- Department of Anesthesiology, Zhongnan Hospital of Wuhan University, Wuhan, Hubei, China
- Department of Anesthesiology, Hubei Provincial Engineering Research Center of Minimally Invasive Cardiovascular Sugery, Wuhan, China
- Department of Anesthesiology, Wuhan Clinical Research Center for Minimally Invasive Treatment of Structural Heart Disease, Wuhan, China
| | - Yanfang Zhang
- Department of Geriatrics, Zhongnan Hospital of Wuhan University, Wuhan, Hubei, China
| | - Xujun Ye
- Department of Geriatrics, Zhongnan Hospital of Wuhan University, Wuhan, Hubei, China
| | - Xinyi Li
- Department of Anesthesiology, Zhongnan Hospital of Wuhan University, Wuhan, Hubei, China
- Department of Anesthesiology, Hubei Provincial Engineering Research Center of Minimally Invasive Cardiovascular Sugery, Wuhan, China
- Department of Anesthesiology, Wuhan Clinical Research Center for Minimally Invasive Treatment of Structural Heart Disease, Wuhan, China
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Solek P, Nurfitri E, Sahril I, Prasetya T, Rizqiamuti AF, Burhan, Rachmawati I, Gamayani U, Rusmil K, Chandra LA, Afriandi I, Gunawan K. The Role of Artificial Intelligence for Early Diagnostic Tools of Autism Spectrum Disorder: A Systematic Review. Turk Arch Pediatr 2025; 60:126-140. [PMID: 40091547 PMCID: PMC11963361 DOI: 10.5152/turkarchpediatr.2025.24183] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2024] [Accepted: 01/04/2025] [Indexed: 03/19/2025]
Abstract
Objective: Autism Spectrum Disorder (ASD) is a complex neurodevelopmental condition characterized by challenges in social communication and repetitive behaviors. This systematic review examines the application of artificial intelligence (AI) in diagnosing ASD, focusing on pediatric populations aged 0-18 years. Materials and methods: A systematic review was conducted following Preferred Reporting Items for Systematic Reviews and Meta-Analyses 2020 guidelines. Inclusion criteria encompassed studies applying AI techniques for ASD diagnosis, primarily evaluated using metriclike accuracy. Non-English articles and studies not focusing on diagnostic applications were excluded. The literature search covered PubMed, ScienceDirect, CENTRAL, ProQuest, Web of Science, and Google Scholar up to November 9, 2024. Bias assessment was performed using the Joanna Briggs Institute checklist for critical appraisal. Results: The review included 25 studies. These studies explored AI-driven approaches that demonstrated high accuracy in classifying ASD using various data modalities, including visual (facial, home videos, eye-tracking), motor function, behavioral, microbiome, genetic, and neuroimaging data. Key findings highlight the efficacy of AI in analyzing complex datasets, identifying subtle ASD markers, and potentially enabling earlier intervention. The studies showed improved diagnostic accuracy, reduced assessment time, and enhanced predictive capabilities. Conclusion: The integration of AI technologies in ASD diagnosis presents a promising frontier for enhancing diagnostic accuracy, efficiency, and early detection. While these tools can increase accessibility to ASD screening in underserved areas, challenges related to data quality, privacy, ethics, and clinical integration remain. Future research should focus on applying diverse AI techniques to large populations for comparative analysis to develop more robust diagnostic models.
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Affiliation(s)
- Purboyo Solek
- Department of Child Health, Padjadjaran University Faculty of Medicine, Hasan Sadikin General Hospital, West Java, Indonesia
| | - Eka Nurfitri
- Department of Child Health, Padjadjaran University Faculty of Medicine, Hasan Sadikin General Hospital, West Java, Indonesia
| | - Indra Sahril
- Department of Child Health, Padjadjaran University Faculty of Medicine, Hasan Sadikin General Hospital, West Java, Indonesia
| | - Taufan Prasetya
- Department of Child Health, Padjadjaran University Faculty of Medicine, Hasan Sadikin General Hospital, West Java, Indonesia
| | - Anggia Farrah Rizqiamuti
- Department of Child Health, Padjadjaran University Faculty of Medicine, Hasan Sadikin General Hospital, West Java, Indonesia
| | - Burhan
- Department of Child Health, Padjadjaran University Faculty of Medicine, Hasan Sadikin General Hospital, West Java, Indonesia
| | - Irma Rachmawati
- Department of Child Health, Padjadjaran University Faculty of Medicine, Hasan Sadikin General Hospital, West Java, Indonesia
| | - Uni Gamayani
- Department of Neurology, Padjadjaran University Faculty of Medicine, Hasan Sadikin General Hospital, West Java, Indonesia
| | - Kusnandi Rusmil
- Department of Child Health, Padjadjaran University Faculty of Medicine, Hasan Sadikin General Hospital, West Java, Indonesia
| | - Lukman Ade Chandra
- Department of Pharmacology and Therapy, Gadjah Mada University Faculty of Medicine, Public Health and Nursing, Yogyakarta, Indonesia
| | - Irvan Afriandi
- Department of Public Health, Padjadjaran University Faculty of Medicine, Hasan Sadikin General Hospital, West Java, Indonesia
| | - Kevin Gunawan
- Atma Jaya Catholic University of Indonesia Faculty of Medicine and Health Sciences, Jakarta, Indonesia
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Weizman O, Hamzi K, Henry P, Schurtz G, Hauguel-Moreau M, Trimaille A, Bedossa M, Dib JC, Attou S, Boukertouta T, Boccara F, Pommier T, Lim P, Bochaton T, Millischer D, Merat B, Picard F, Grinberg N, Sulman D, Pasdeloup B, El Ouahidi Y, Gonçalves T, Vicaut E, Dillinger JG, Toupin S, Pezel T. Machine learning score to predict in-hospital outcomes in patients hospitalized in cardiac intensive care unit. EUROPEAN HEART JOURNAL. DIGITAL HEALTH 2025; 6:218-227. [PMID: 40110223 PMCID: PMC11914730 DOI: 10.1093/ehjdh/ztae098] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/24/2024] [Revised: 10/03/2024] [Accepted: 11/05/2024] [Indexed: 03/22/2025]
Abstract
Aims Although some scores based on traditional statistical methods are available for risk stratification in patients hospitalized in cardiac intensive care units (CICUs), the interest of machine learning (ML) methods for risk stratification in this field is not well established. We aimed to build an ML model to predict in-hospital major adverse events (MAE) in patients hospitalized in CICU. Methods and results In April 2021, a French national prospective multicentre study involving 39 centres included all consecutive patients admitted to CICU. The primary outcome was in-hospital MAE, including death, resuscitated cardiac arrest, or cardiogenic shock. Using 31 randomly assigned centres as an index cohort (divided into training and testing sets), several ML models were evaluated to predict in-hospital MAE. The eight remaining centres were used as an external validation cohort. Among 1499 consecutive patients included (aged 64 ± 15 years, 70% male), 67 had in-hospital MAE (4.3%). Out of 28 clinical, biological, ECG, and echocardiographic variables, seven were selected to predict MAE in the training set (n = 844). Boosted cost-sensitive C5.0 technique showed the best performance compared with other ML methods [receiver operating characteristic area under the curve (AUROC) = 0.90, precision-recall AUC = 0.57, F1 score = 0.5]. Our ML score showed a better performance than existing scores (AUROC: ML score = 0.90 vs. Thrombolysis In Myocardial Infarction (TIMI) score: 0.56, Global Registry of Acute Coronary Events (GRACE) score: 0.52, Acute Heart Failure (ACUTE-HF) score: 0.65; all P < 0.05). Machine learning score also showed excellent performance in the external cohort (AUROC = 0.88). Conclusion This new ML score is the first to demonstrate improved performance in predicting in-hospital outcomes over existing scores in patients admitted to the intensive care unit based on seven simple and rapid clinical and echocardiographic variables. Trial Registration ClinicalTrials.gov Identifier: NCT05063097.
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Affiliation(s)
- Orianne Weizman
- Department of Cardiology, APHP-Hopital Ambroise Paré, 92100 Boulogne Billancourt, France
- Université Paris-Cité, PARCC, INSERM, 75015 Paris, France
| | - Kenza Hamzi
- Department of Cardiology, University Hospital of Lariboisiere (Assistance Publique des Hôpitaux de Paris, AP-HP), Université Paris-Cité, Inserm MASCOT UMRS 942, 2 Rue Ambroise Paré, 75010 Paris, France
- DATA-TEMPLE Laboratory, Department of Data Science, Machine Learning and Artificial Intelligence in Health, University Hospital of Lariboisiere (AP-HP), 2 Rue Ambroise Paré, 75010 Paris, France
| | - Patrick Henry
- Department of Cardiology, University Hospital of Lariboisiere (Assistance Publique des Hôpitaux de Paris, AP-HP), Université Paris-Cité, Inserm MASCOT UMRS 942, 2 Rue Ambroise Paré, 75010 Paris, France
- DATA-TEMPLE Laboratory, Department of Data Science, Machine Learning and Artificial Intelligence in Health, University Hospital of Lariboisiere (AP-HP), 2 Rue Ambroise Paré, 75010 Paris, France
| | - Guillaume Schurtz
- Department of Cardiology, University Hospital of Lille, Lille, France
| | - Marie Hauguel-Moreau
- Department of Cardiology, APHP-Hopital Ambroise Paré, 92100 Boulogne Billancourt, France
| | - Antonin Trimaille
- Department of Cardiology, Nouvel Hôpital Civil, Strasbourg University Hospital, 67000 Strasbourg, France
| | - Marc Bedossa
- Department of Cardiology, CHU Rennes, 35000 Rennes, France
| | - Jean Claude Dib
- Department of Cardiology, Clinique Ambroise Paré, Neuilly-sur-Seine, France
| | - Sabir Attou
- Department of Cardiology, Caen University Hospital, Caen, France
| | - Tanissia Boukertouta
- Department of Cardiology, Hôpital Avicenne, Assistance Publique-Hôpitaux de Paris, Paris, France
| | - Franck Boccara
- Department of Cardiology, Saint-Antoine Hospital, APHP, Sorbonne University, Paris, France
| | - Thibaut Pommier
- Department of Cardiology, University Hospital, Dijon, France
| | - Pascal Lim
- Intensive Cardiac Care Department, University Hospital Henri Mondor, 94000 Créteil, France
| | - Thomas Bochaton
- Intensive Cardiological Care Division, Louis Pradel Hospital, Hospices Civils de Lyon, Bron, France
| | - Damien Millischer
- Cardiology Department, Montfermeil Hospital, 93370 Montfermeil, France
| | - Benoit Merat
- Cardiology and Aeronautical Medicine Department, Hôpital d'Instruction des Armées Percy, 101 Avenue Henri Barbusse, 92140 Clamart, France
| | - Fabien Picard
- Cardiology Department, Hôpital Cochin, Paris, France
| | | | - David Sulman
- Department of Cardiology, Hôpital Bichat, Assistance Publique-Hôpitaux de Paris, Université de Paris, Paris, France
| | | | | | - Treçy Gonçalves
- Department of Cardiology, University Hospital of Lariboisiere (Assistance Publique des Hôpitaux de Paris, AP-HP), Université Paris-Cité, Inserm MASCOT UMRS 942, 2 Rue Ambroise Paré, 75010 Paris, France
- DATA-TEMPLE Laboratory, Department of Data Science, Machine Learning and Artificial Intelligence in Health, University Hospital of Lariboisiere (AP-HP), 2 Rue Ambroise Paré, 75010 Paris, France
| | - Eric Vicaut
- Unité de Recherche Clinique, Groupe Hospitalier Lariboisiere Fernand-Widal, Paris, Île-de-France, France
| | - Jean-Guillaume Dillinger
- Department of Cardiology, University Hospital of Lariboisiere (Assistance Publique des Hôpitaux de Paris, AP-HP), Université Paris-Cité, Inserm MASCOT UMRS 942, 2 Rue Ambroise Paré, 75010 Paris, France
- DATA-TEMPLE Laboratory, Department of Data Science, Machine Learning and Artificial Intelligence in Health, University Hospital of Lariboisiere (AP-HP), 2 Rue Ambroise Paré, 75010 Paris, France
| | - Solenn Toupin
- Department of Cardiology, University Hospital of Lariboisiere (Assistance Publique des Hôpitaux de Paris, AP-HP), Université Paris-Cité, Inserm MASCOT UMRS 942, 2 Rue Ambroise Paré, 75010 Paris, France
- DATA-TEMPLE Laboratory, Department of Data Science, Machine Learning and Artificial Intelligence in Health, University Hospital of Lariboisiere (AP-HP), 2 Rue Ambroise Paré, 75010 Paris, France
| | - Théo Pezel
- Department of Cardiology, University Hospital of Lariboisiere (Assistance Publique des Hôpitaux de Paris, AP-HP), Université Paris-Cité, Inserm MASCOT UMRS 942, 2 Rue Ambroise Paré, 75010 Paris, France
- DATA-TEMPLE Laboratory, Department of Data Science, Machine Learning and Artificial Intelligence in Health, University Hospital of Lariboisiere (AP-HP), 2 Rue Ambroise Paré, 75010 Paris, France
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Jessica H, Britney R, Sarira ED, Parisa A, Joe Z, Betty B C. Applications of artificial intelligence in current pharmacy practice: A scoping review. Res Social Adm Pharm 2025; 21:134-141. [PMID: 39730225 DOI: 10.1016/j.sapharm.2024.12.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2023] [Revised: 10/13/2024] [Accepted: 12/16/2024] [Indexed: 12/29/2024]
Abstract
BACKGROUND Artificial intelligence (AI), a branch of computer science, has been of growing research interest since its introduction to healthcare disciplines in the 1970s. Research has demonstrated that the application of such technologies has allowed for greater task accuracy and efficiency in medical disciplines such as diagnostics, treatment protocols and clinical decision-making. Application in pharmacy practice is reportedly narrower in scope; with greater emphasis placed on stock management and day-to-day function optimisation than enhancing patient outcomes. Despite this, new studies are underway to explore how AI technologies may be utilised in areas such as pharmacist interventions, medication adherence, and personalised medicine. Objective/s: The aim of this study was to identify current use of AI in measuring performance outcomes in pharmacy practice. METHODS A scoping review was conducted in accordance with PRISMA Extension for Scoping Reviews (PRISMA-ScR). A comprehensive literature search was conducted in MEDLINE, Embase, IPA (International Pharmaceutical Abstracts), and Web of Science databases for articles published between January 1, 2018 to September 11, 2023, relevant to the aim. The final search strategy included the following terms: ("artificial intelligence") AND ("pharmacy" OR "pharmacist" OR "pharmaceutical service" OR "pharmacy service"). Reference lists of identified review articles were also screened. RESULTS The literature search identified 560 studies, of which seven met the inclusion criteria. These studies described the use of AI in pharmacy practice. All seven studies utilised models derived from machine learning AI techniques. AI identification of prescriptions requiring pharmacist intervention was the most frequent (n = 4), followed by screening services (n = 2), and patient-facing mobile applications (n = 1). These results indicated a workflow- and productivity-focused application of AI within current pharmacy practice, with minimal intention for direct patient health outcome improvement. Despite this, the review also revealed AI's potential in data collation and analytics to aid in pharmacist contribution towards the healthcare team and improvement of health outcomes. CONCLUSIONS This scoping review has identified, from the literature available, three main areas of focus, (1) identification and classification of atypical or inappropriate medication orders, (2) improving efficiency of mass screening services, and (3) improving adherence and quality use of medicines. It also identified gaps in AI's current utility within the profession and its potential for day-to-day practice, as our understanding of general AI techniques continues to advance.
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Affiliation(s)
- Hatzimanolis Jessica
- School of Pharmacy, Faculty of Medicine and Health, The University of Sydney, Camperdown, Australia
| | - Riley Britney
- School of Pharmacy, Faculty of Medicine and Health, The University of Sydney, Camperdown, Australia
| | - El-Den Sarira
- School of Pharmacy, Faculty of Medicine and Health, The University of Sydney, Camperdown, Australia
| | - Aslani Parisa
- School of Pharmacy, Faculty of Medicine and Health, The University of Sydney, Camperdown, Australia.
| | | | - Chaar Betty B
- School of Pharmacy, Faculty of Medicine and Health, The University of Sydney, Camperdown, Australia
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Kokori E, Patel R, Olatunji G, Ukoaka BM, Abraham IC, Ajekiigbe VO, Kwape JM, Babalola AE, Udam NG, Aderinto N. Machine learning in predicting heart failure survival: a review of current models and future prospects. Heart Fail Rev 2025; 30:431-442. [PMID: 39656330 DOI: 10.1007/s10741-024-10474-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 12/04/2024] [Indexed: 02/07/2025]
Abstract
Heart failure is a complex and prevalent condition with significant implications for patient management and survival prediction. Traditional predictive models often fall short in accuracy due to their reliance on pre-specified predictors and assumptions of variable independence. This review aims to assess the role of machine learning (ML) algorithms in predicting heart failure survival, comparing their performance with traditional statistical methods and identifying key predictive features. We conducted a review of studies utilizing ML algorithms for heart failure survival prediction. Data were sourced from PubMed/MEDLINE, Google Scholar, ScienceDirect, Embase, DOAJ, and the Cochrane Library, covering studies published until July 2024. A total of 10 studies were reviewed, encompassing 468,171 patients with heart failure. ML algorithms, particularly random forests and gradient boosting methods, demonstrated superior performance compared to traditional statistical models. These algorithms effectively identified key risk factors and stratified patients into risk categories with high accuracy. Notably, extreme learning machine (ELM) and CatBoost models showed exceptional predictive capabilities, as indicated by metrics such as Harrell's concordance index (C-index) and area under the curve (AUC). Key predictive features included ejection fraction (EF), serum creatinine (S Cr), and blood urea nitrogen (BUN). ML algorithms offer significant advantages in predicting heart failure survival by uncovering complex patterns and improving risk stratification. Their integration into clinical practice could lead to more personalized treatment strategies and enhanced patient outcomes. However, challenges such as data quality, model interpretability, and integration into clinical workflows need to be addressed.
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Affiliation(s)
- Emmanuel Kokori
- Department of Medicine and Surgery, University of Ilorin, Ilorin, Nigeria
| | - Ravi Patel
- Department of Internal Medicine, Methodist Health System Dallas, Dallas, TX, USA
| | - Gbolahan Olatunji
- Department of Medicine and Surgery, University of Ilorin, Ilorin, Nigeria
| | | | | | | | | | | | | | - Nicholas Aderinto
- Department of Medicine and Surgery, Ladoke Akintola University of Technology, Ogbomoso, Nigeria.
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