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Chirra PV, Giriprakash P, Rizk AG, Kurowski JA, Viswanath SE, Gandhi NS. Developing a Reproducible Radiomics Model for Diagnosis of Active Crohn's Disease on CT Enterography Across Annotation Variations and Acquisition Differences. JOURNAL OF IMAGING INFORMATICS IN MEDICINE 2025; 38:1594-1605. [PMID: 39466507 DOI: 10.1007/s10278-024-01303-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/22/2024] [Revised: 09/24/2024] [Accepted: 10/11/2024] [Indexed: 10/30/2024]
Abstract
To systematically identify radiomics features on CT enterography (CTE) scans which can accurately diagnose active Crohn's disease across multiple sources of variation. Retrospective study of CTE scans curated between 2013 and 2015, comprising 164 subjects (65 male, 99 female; all patients were over the age of 18) with endoscopic confirmation for the presence or absence of active Crohn's disease. All patients had three distinct sets of scans available (full and reduced dose, where the latter had been reconstructed via two different methods), acquired on a single scanner at a single institution. Radiomics descriptors from annotated terminal ileum regions were individually and systematically evaluated for resilience to different imaging variations (changes in dose/reconstruction, batch effects, and simulated annotation differences) via multiple reproducibility measures. Multiple radiomics models (by accounting for each source of variation) were evaluated in terms of classifier area under the ROC curve (AUC) for identifying patients with active Crohn's disease, across separate discovery and hold-out validation cohorts. Radiomics descriptors selected based on resiliency to multiple sources of imaging variation yielded the highest overall classification performance in the discovery cohort (AUC = 0.79 ± 0.04) which also best generalized in hold-out validation (AUC = 0.81). Performance was maintained across multiple doses and reconstructions while also being significantly better (p < 0.001) than non-resilient descriptors or descriptors only resilient to a single source of variation. Radiomics features can accurately diagnose active Crohn's disease on CTE scans across multiple sources of imaging variation via systematic analysis of reproducibility measures. Clinical utility and translatability of radiomics features for diagnosis and characterization of Crohn's disease on CTE scans will be contingent on their reproducibility across multiple types and sources of imaging variation.
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Affiliation(s)
- Prathyush V Chirra
- Department of Biomedical Engineering, Case Western Reserve University, Cleveland, OH, USA
| | - Pavithran Giriprakash
- Department of Biomedical Engineering, Case Western Reserve University, Cleveland, OH, USA
| | - Alain G Rizk
- Section, Abdominal Imaging, Imaging Institute, and Digestive Diseases and Surgery Institute and Cancer Institute, Cleveland Clinic, Cleveland, OH, USA
| | - Jacob A Kurowski
- Department of Pediatric Gastroenterology, Hepatology & Nutrition, Cleveland Clinic, Cleveland, OH, USA
| | - Satish E Viswanath
- Department of Biomedical Engineering, Case Western Reserve University, Cleveland, OH, USA.
- Cleveland Veterns Affairs Medical Center, Cleveland, OH, USA.
| | - Namita S Gandhi
- Section, Abdominal Imaging, Imaging Institute, and Digestive Diseases and Surgery Institute and Cancer Institute, Cleveland Clinic, Cleveland, OH, USA
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Mali SA, Rad NM, Woodruff HC, Depeursinge A, Andrearczyk V, Lambin P. Harmonizing CT scanner acquisition variability in an anthropomorphic phantom: A comparative study of image-level and feature-level harmonization using GAN, ComBat, and their combination. PLoS One 2025; 20:e0322365. [PMID: 40344028 PMCID: PMC12063804 DOI: 10.1371/journal.pone.0322365] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2024] [Accepted: 03/20/2025] [Indexed: 05/11/2025] Open
Abstract
PURPOSE Radiomics allows for the quantification of medical images and facilitates precision medicine. Many radiomic features derived from computed tomography (CT) are sensitive to variations across scanners, reconstruction settings, and acquisition protocols. In this phantom study, eight different CT reconstruction parameters were varied to explore image- and feature-level harmonization approaches to improve tissue classification. METHODS Varying reconstructions of an anthropomorphic radiopaque phantom containing three lesion categories (metastasis, hemangioma, and benign cyst) and normal liver tissue were used for evaluating two harmonization methods and their combination: (i) generative adversarial networks (GANs) at the image level; (ii) ComBat at the feature level, and (iii) a combination of (i) and (ii). A total of 93 texture and intensity features were extracted from each tissue class before and after image-level harmonization and were also harmonized at the feature level. Reproducibility and stability were assessed via the Concordance Correlation Coefficient (CCC) and pairwise comparisons using paired stability tests. The ability of features to discriminate between tissue classes was assessed by measuring the area under the receiver operating characteristic curve. The global reproducibility and discriminative power were assessed by averaging over the entire dataset and across all tissue types. RESULTS ComBat improved reproducibility by 31.58% and stability by 5.24%, while GAN increased reproducibility by 8% it reduced stability by 4.33%. Classification analysis revealed that ComBat increased average AUC by 15.19%, whereas GAN decreased AUC by 2.56%. CONCLUSION While GAN qualitatively enhances image harmonization, ComBat provides superior statistical improvements in feature stability and classification performance, highlighting the importance of robust feature-level harmonization in radiomics.
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Affiliation(s)
- Shruti Atul Mali
- The D-Lab, Department of Precision Medicine, GROW- Research Institute for Oncology and Reproduction, Maastricht University, Maastricht, Netherlands
| | - Nastaran Mohammadian Rad
- The D-Lab, Department of Precision Medicine, GROW- Research Institute for Oncology and Reproduction, Maastricht University, Maastricht, Netherlands
| | - Henry C. Woodruff
- The D-Lab, Department of Precision Medicine, GROW- Research Institute for Oncology and Reproduction, Maastricht University, Maastricht, Netherlands
- Department of Radiology and Nuclear Medicine, GROW- Research Institute School for Oncology and Reproduction, Maastricht University Medical Centre+, Maastricht, Netherlands
| | - Adrien Depeursinge
- Institute of Information Systems, University of Applied Sciences and Arts Western Switzerland, Sierre, Switzerland
- Department of Nuclear Medicine and Molecular Imaging, Centre Hospitalier Universitaire Vaudois (CHUV), Lausanne, Switzerland
| | - Vincent Andrearczyk
- Institute of Information Systems, University of Applied Sciences and Arts Western Switzerland, Sierre, Switzerland
| | - Philippe Lambin
- The D-Lab, Department of Precision Medicine, GROW- Research Institute for Oncology and Reproduction, Maastricht University, Maastricht, Netherlands
- Department of Radiology and Nuclear Medicine, GROW- Research Institute School for Oncology and Reproduction, Maastricht University Medical Centre+, Maastricht, Netherlands
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Liu J, Li Y, Long Y, Zheng Y, Liang J, Lin W, Guo L, Qing H, Zhou P. Predicting High-risk Lung Adenocarcinoma in Solid and Part-solid Nodules on Low-dose CT: A Multicenter Study. Acad Radiol 2025; 32:2966-2976. [PMID: 39672702 DOI: 10.1016/j.acra.2024.11.059] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2024] [Revised: 11/20/2024] [Accepted: 11/22/2024] [Indexed: 12/15/2024]
Abstract
RATIONALE AND OBJECTIVES High-grade patterns, visceral pleural invasion, lymphovascular invasion, spread through air spaces, and lymph node metastasis are high-risk factors and associated with poor prognosis in lung adenocarcinomas (LUADs). This study aimed to construct and validate a radiomic model and a radiographic model derived from low-dose CT (LDCT) for predicting high-risk LUADs in solid and part-solid nodules. MATERIALS AND METHODS This study retrospectively enrolled 658 pathologically confirmed LUADs from July 2018 to December 2022 from four centers, which were divided into training set (n=411), internal validation set (n=139), and external validation set (n=108). Radiomic features and radiographic features including maximal diameter, consolidation/tumor ratio (CTR), and semantic features, were obtained to construct a radiomic model and a radiographic model through multivariable logistic regression. Area under receiver operating characteristic curve (AUC) was utilized to assess the diagnostic performance of the models. RESULTS Three radiomic features (GLCM_Correlation, GLSZM_SmallAreaEmphasis, and GLDM_LargeDependenceHighGrayLevelEmphasis) and four radiographic features (maximal diameter, CTR, spiculation, and pleural indentation) were selected to build models. The radiomic model yielded AUCs of 0.916 in the internal validation set and 0.938 in the external validation set, which were significantly higher than the AUCs of the radiographic model (0.916 vs. 0.868, P=0.014 and 0.938 vs. 0.880, P=0.002). CONCLUSION Our LDCT-based radiomic model enabled non-invasive identification of high-risk LUADs in solid and part-solid nodules with good diagnostic performance and might assist in case-specific decision-making in lung cancer screening.
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Affiliation(s)
- Jieke Liu
- Department of Radiology, Sichuan Clinical Research Center for Cancer, Sichuan Cancer Hospital & Institute, Sichuan Cancer Center, Affiliated Cancer Hospital of University of Electronic Science and Technology of China, Chengdu, China (J.L., Y.L., Y.L., L.G., H.Q., P.Z.)
| | - Yong Li
- Department of Radiology, Sichuan Clinical Research Center for Cancer, Sichuan Cancer Hospital & Institute, Sichuan Cancer Center, Affiliated Cancer Hospital of University of Electronic Science and Technology of China, Chengdu, China (J.L., Y.L., Y.L., L.G., H.Q., P.Z.)
| | - Yu Long
- Department of Radiology, Sichuan Clinical Research Center for Cancer, Sichuan Cancer Hospital & Institute, Sichuan Cancer Center, Affiliated Cancer Hospital of University of Electronic Science and Technology of China, Chengdu, China (J.L., Y.L., Y.L., L.G., H.Q., P.Z.)
| | - Yongji Zheng
- Department of Radiology, Deyang People's Hospital, Deyang, China (Y.Z.)
| | - Junqiang Liang
- Department of Radiology, People's Hospital of Lezhi, Ziyang, China (J.L.)
| | - Wei Lin
- Department of Radiology, Chengdu First People's Hospital, Chengdu, China (W.L.)
| | - Ling Guo
- Department of Radiology, Sichuan Clinical Research Center for Cancer, Sichuan Cancer Hospital & Institute, Sichuan Cancer Center, Affiliated Cancer Hospital of University of Electronic Science and Technology of China, Chengdu, China (J.L., Y.L., Y.L., L.G., H.Q., P.Z.)
| | - Haomiao Qing
- Department of Radiology, Sichuan Clinical Research Center for Cancer, Sichuan Cancer Hospital & Institute, Sichuan Cancer Center, Affiliated Cancer Hospital of University of Electronic Science and Technology of China, Chengdu, China (J.L., Y.L., Y.L., L.G., H.Q., P.Z.)
| | - Peng Zhou
- Department of Radiology, Sichuan Clinical Research Center for Cancer, Sichuan Cancer Hospital & Institute, Sichuan Cancer Center, Affiliated Cancer Hospital of University of Electronic Science and Technology of China, Chengdu, China (J.L., Y.L., Y.L., L.G., H.Q., P.Z.).
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Jensen LJ, Kim D, Elgeti T, Steffen IG, Schaafs LA, Cretnik A, Hamm B, Nagel SN. Effects of parametric feature maps on the reproducibility of radiomics from different fields of view in cardiac magnetic resonance cine images- a clinical and experimental study setting. THE INTERNATIONAL JOURNAL OF CARDIOVASCULAR IMAGING 2025:10.1007/s10554-025-03404-y. [PMID: 40266551 DOI: 10.1007/s10554-025-03404-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/05/2024] [Accepted: 04/10/2025] [Indexed: 04/24/2025]
Abstract
In cardiac MRI, the field of view (FOV) is adapted to the individual patient's size, influencing spatial resolution and myocardial radiomics. This study aimed to investigate the effects of parametric feature maps on radiomics derived from cine images acquired with different FOV sizes on individuals without myocardial pathologies. In the clinical setting, cardiac MRI scans from clinical care were screened retrospectively for patients without pathological findings, neither in the MRI nor the medical history or follow-up, resulting in 61 included patients. In the experimental setting, 12 healthy volunteers were prospectively examined on a 1.5 Tesla MRI scanner with cine images acquired with three different FOVs (256 × 329 mm, 279 × 359 mm, 302 × 390 mm). One midventricular end-diastolic short-axis slice of the non-enhanced cine images was extracted for healthy volunteers and patients. The left ventricular myocardium was encompassed with regions of interest (ROIs). Ninety-three features were extracted using PyRadiomics. Images were converted to parametric radiomic feature maps using pretested software. ROIs were copied to the maps to retrieve the feature quantity. The variability of features across the different FOVs from the original images and feature maps was assessed with coefficients of variation (COVs) and rated stable at up to 10%. When derived from the original images, out of the 93 extracted features, only 24 (patients) and 29 (volunteers) revealed COVs < 10%. When extracted from the parametric maps, the number of stable features increased by 63% and 66%, with 39 (patients) and 48 (volunteers) features showing COVs < 10%, respectively. Software-computed parametric feature maps improve the reproducibility of radiomics across different FOVs in cardiac cine images of individuals without myocardial pathologies. Prospective investigations with different FOVs of a patient collective with myocardial pathologies could enhance the generalizability of the findings.
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Affiliation(s)
- Laura Jacqueline Jensen
- Department of Radiology, Charité- Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität zu Berlin and Berlin Institute of Health, Hindenburgdamm 30, 12203, Berlin, Germany.
| | - Damon Kim
- Department of Radiology, Charité- Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität zu Berlin and Berlin Institute of Health, Hindenburgdamm 30, 12203, Berlin, Germany
| | - Thomas Elgeti
- Department of Radiology, Charité- Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität zu Berlin and Berlin Institute of Health, Hindenburgdamm 30, 12203, Berlin, Germany
| | - Ingo Günter Steffen
- Department of Radiology, Charité- Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität zu Berlin and Berlin Institute of Health, Hindenburgdamm 30, 12203, Berlin, Germany
| | - Lars-Arne Schaafs
- Department of Radiology, Charité- Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität zu Berlin and Berlin Institute of Health, Hindenburgdamm 30, 12203, Berlin, Germany
| | - Anja Cretnik
- Department of Cardiology, Angiology and Intensive Care Medicine, Charité- Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität zu Berlin and Berlin Institute of Health, Hindenburgdamm 30, 12203, Berlin, Germany
| | - Bernd Hamm
- Department of Radiology, Charité- Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität zu Berlin and Berlin Institute of Health, Hindenburgdamm 30, 12203, Berlin, Germany
| | - Sebastian Niko Nagel
- Department of Radiology, Charité- Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität zu Berlin and Berlin Institute of Health, Hindenburgdamm 30, 12203, Berlin, Germany
- Department of Diagnostic and Interventional Radiology and Paediatric Radiology, Bielefeld University Medical School and University Medical Center East Westphalia-Lippe Protestant Hospital of the Bethel Foundation Academic, Burgsteig 13, 33617, Bielefeld, Germany
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Zhao J, Vaios E, Yang Z, Lu K, Floyd S, Yang D, Ji H, Reitman ZJ, Lafata KJ, Fecci P, Kirkpatrick JP, Wang C. Radiogenomic explainable AI with neural ordinary differential equation for identifying post-SRS brain metastasis radionecrosis. Med Phys 2025; 52:2661-2674. [PMID: 39878595 DOI: 10.1002/mp.17635] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2024] [Revised: 12/18/2024] [Accepted: 01/02/2025] [Indexed: 01/31/2025] Open
Abstract
BACKGROUND Stereotactic radiosurgery (SRS) is widely used for managing brain metastases (BMs), but an adverse effect, radionecrosis, complicates post-SRS management. Differentiating radionecrosis from tumor recurrence non-invasively remains a major clinical challenge, as conventional imaging techniques often necessitate surgical biopsy for accurate diagnosis. Machine learning and deep learning models have shown potential in distinguishing radionecrosis from tumor recurrence. However, their clinical adoption is hindered by a lack of explainability, limiting understanding and trust in their diagnostic decisions. PURPOSE To utilize a novel neural ordinary differential equation (NODE) model for discerning BM post-SRS radionecrosis from recurrence. This approach integrates image-deep features, genomic biomarkers, and non-image clinical parameters within a synthesized latent feature space. The trajectory of each data sample towards the diagnosis decision can be visualized within this feature space, offering a new angle on radiogenomic data analysis foundational for AI explainability. METHODS By hypothesizing that deep feature extraction can be modeled as a spatiotemporally continuous process, we designed a novel model based on heavy ball NODE (HBNODE) in which deep feature extraction was governed by a second-order ODE. This approach enabled tracking of deep neural network (DNN) behavior by solving the HBNODE and observing the stepwise derivative evolution. Consequently, the trajectory of each sample within the Image-Genomic-Clinical (I-G-C) space became traceable. A decision-making field (F) was reconstructed within the feature space, with its gradient vectors directing the data samples' trajectories and intensities showing the potential. The evolution of F reflected the cumulative feature contributions at intermediate states to the final diagnosis, enabling quantitative and dynamic comparisons of the relative contribution of each feature category over time. A velocity curve was designed to determine key intermediate states (locoregional ∇F = 0) that are most predictive. Subsequently, a non-parametric model aggregated the optimal solutions from these key states to predict outcomes. Our dataset included 90 BMs from 62 NSCLC patients, and 3-month post-SRS T1+c MR image features, seven NSCLC genomic features, and seven clinical features were analyzed. An 8:2 train/test assignment was employed, and five independent models were trained to ensure robustness. Performance was benchmarked in sensitivity, specificity, accuracy, and ROCAUC, and results were compared against (1) a DNN using only image-based features, and (2) a combined "I+G+C" features without the HBNODE model. RESULTS The temporal evolution of gradient vectors and potential fields in F suggested that clinical features contribute the most during the initial stages of the HBNODE implementation, followed by imagery features taking dominance in the latter ones, while genomic features contribute the least throughout the process. The HBNODE model successfully identified and assembled key intermediate states, exhibiting competitive performance with an ROCAUC of 0.88 ± 0.04, sensitivity of 0.79 ± 0.02, specificity of 0.86 ± 0.01, and accuracy of 0.84 ± 0.01, where the uncertainties represent standard deviations. For comparison, the image-only DNN model achieved an ROCAUC of 0.71 ± 0.05 and sensitivity of 0.66 ± 0.32 (p = 0.086), while the "I+G+C" model without HBNODE reported an ROCAUC of 0.81 ± 0.02 and sensitivity of 0.58 ± 0.11 (p = 0.091). CONCLUSION The HBNODE model effectively identifies BM radionecrosis from recurrence, enhancing explainability within XAI frameworks. Its performance encourages further exploration in clinical settings and suggests potential applicability across various XAI domains.
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Affiliation(s)
- Jingtong Zhao
- Deparment of Radiation Oncology, Duke University, Durham, North Carolina, USA
| | - Eugene Vaios
- Deparment of Radiation Oncology, Duke University, Durham, North Carolina, USA
| | - Zhenyu Yang
- Medical Physics Graduate Program, Duke Kunshan University, Kunshan, Jiangsu, China
| | - Ke Lu
- Deparment of Radiation Oncology, Duke University, Durham, North Carolina, USA
| | - Scott Floyd
- Deparment of Radiation Oncology, Duke University, Durham, North Carolina, USA
| | - Deshan Yang
- Deparment of Radiation Oncology, Duke University, Durham, North Carolina, USA
| | - Hangjie Ji
- Department of Mathematics, North Carolina State University, Raleigh, North Carolina, USA
| | - Zachary J Reitman
- Deparment of Radiation Oncology, Duke University, Durham, North Carolina, USA
| | - Kyle J Lafata
- Deparment of Radiation Oncology, Duke University, Durham, North Carolina, USA
- Department of Radiology, Duke University, Durham, North Carolina, USA
- Department of Electrical and Computer Engineering, Duke University, Durham, North Carolina, USA
| | - Peter Fecci
- Department of Neurosurgery, Duke University, Durham, North Carolina, USA
| | - John P Kirkpatrick
- Deparment of Radiation Oncology, Duke University, Durham, North Carolina, USA
| | - Chunhao Wang
- Deparment of Radiation Oncology, Duke University, Durham, North Carolina, USA
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Long S, Li M, Chen J, Zhong L, Dai G, Pan D, Liu W, Yi F, Ruan Y, Zou B, Chen X, Fu K, Li W. Transfer learning radiomic model predicts intratumoral tertiary lymphoid structures in hepatocellular carcinoma: a multicenter study. J Immunother Cancer 2025; 13:e011126. [PMID: 40037925 PMCID: PMC11881188 DOI: 10.1136/jitc-2024-011126] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2024] [Accepted: 02/16/2025] [Indexed: 03/06/2025] Open
Abstract
BACKGROUND Intratumoral tertiary lymphoid structures (iTLS) in hepatocellular carcinoma (HCC) are associated with improved survival and may influence treatment decisions. However, their non-invasive detection remains challenging in HCC. We aim to develop a non-invasive model using baseline contrast-enhanced MRI to predict the iTLS status. METHODS A total of 660 patients with HCC who underwent surgery were retrospectively recruited from four centers between October 2015 and January 2023 and divided into training, internal test, and external validation sets. After features dimensionality and selection, corresponding features were used to construct transfer learning radiomic (TLR) models for diagnosing iTLS, and model interpretability was explored with pathway analysis in The Cancer Genome Atlas-Liver HCC. The performances of models were assessed using the area under the receiver operating characteristic curve (AUC). The log-rank test was used to evaluate the prognostic value of the TLR model. The combination therapy set of 101 patients with advanced HCC treated with first-line anti-programmed death 1 or ligand 1 plus antiangiogenic treatment between January 2021 and January 2024 was used to investigate the value of the TLR model for evaluating the treatment response. RESULTS The presence of iTLS was identified in 46.0% (n=308) patients. The TLR model demonstrated excellent performance in predicting the presence of iTLS in training (AUC=0.91, 95% CI: 0.87, 0.94), internal test (AUC=0.85, 95% CI: 0.77, 0.93) and external validation set (AUC=0.85, 95% CI: 0.81, 0.90). The TLR model-predicted iTLS group has favorable overall survival (HR=0.66; 95% CI: 0.48, 0.90; p=0.007) and relapse-free survival (HR=0.64; 95% CI: 0.48, 0.85; p=0.001) in the external validation set. The model-predicted iTLS status was associated with inflammatory response and specific tumor-associated signaling activation (all p<0.001). The proportion of treatment responders was significantly higher in the model-predicted group with iTLS than in the group without iTLS (36% vs 13.73%, p=0.009). CONCLUSION The TLR model has indicated accurate prediction of iTLS status, which may assist in the risk stratification for patients with HCC in clinical practice.
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Affiliation(s)
- Shichao Long
- Department of Radiology, and National Clinical Research Center for Geriatric Disorders, Xiangya Hospital Central South University, Changsha, Hunan, China
- Institute of Molecular Precision Medicine and Hunan Key Laboratory of Molecular Precision Medicine, Xiangya Hospital Central South University Department of General Surgery, Changsha, Hunan, China
| | - Mengsi Li
- Department of Radiology, and National Clinical Research Center for Geriatric Disorders, Xiangya Hospital Central South University, Changsha, Hunan, China
| | - Juan Chen
- Department of Radiology, and National Clinical Research Center for Geriatric Disorders, Xiangya Hospital Central South University, Changsha, Hunan, China
| | - Linhui Zhong
- Department of Radiology, and National Clinical Research Center for Geriatric Disorders, Xiangya Hospital Central South University, Changsha, Hunan, China
| | - Ganmian Dai
- Department of Radiology, The Second Affiliated Hospital of Hainan Medical University, Haikou, Hainan, China
| | - Deng Pan
- Department of Nuclear Medicine, Hainan Cancer Hospital, Haikou, Hainan, China
| | - Wenguang Liu
- Department of Radiology, and National Clinical Research Center for Geriatric Disorders, Xiangya Hospital Central South University, Changsha, Hunan, China
| | - Feng Yi
- Institute of Molecular Precision Medicine and Hunan Key Laboratory of Molecular Precision Medicine, Xiangya Hospital Central South University Department of General Surgery, Changsha, Hunan, China
| | - Yue Ruan
- Department of Radiology, and National Clinical Research Center for Geriatric Disorders, Xiangya Hospital Central South University, Changsha, Hunan, China
| | - Bocheng Zou
- Department of Radiology, and National Clinical Research Center for Geriatric Disorders, Xiangya Hospital Central South University, Changsha, Hunan, China
| | - Xiong Chen
- Department of Oncology, Mengchao Hepatobiliary Hospital of Fujian Medical University, Fuzhou, Fujian, China
| | - Kai Fu
- Institute of Molecular Precision Medicine and Hunan Key Laboratory of Molecular Precision Medicine, Xiangya Hospital Central South University Department of General Surgery, Changsha, Hunan, China
- Hunan Key Laboratory of Molecular Precision Medicine, Department of General Surgery, Xiangya Hospital & Center for Medical Genetics, School of Life Sciences, Central South University, Changsha, Hunan, China
- MOE Key Lab of Rare Pediatric Diseases & Hunan Key Laboratory of Medical Genetics of the School of Life Sciences, Central South University, Changsha, Hunan, China
| | - Wenzheng Li
- Department of Radiology, and National Clinical Research Center for Geriatric Disorders, Xiangya Hospital Central South University, Changsha, Hunan, China
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Yang SX, Li M, Zhou LN, Hou DH, Zhang L, Wu N. Reproducibility of the CT radiomic features of pulmonary nodules: the effects of the CT reconstruction algorithm, radiation dose, and contrast agent. Quant Imaging Med Surg 2025; 15:2309-2318. [PMID: 40160618 PMCID: PMC11948441 DOI: 10.21037/qims-24-2026] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2024] [Accepted: 01/14/2025] [Indexed: 04/02/2025]
Abstract
Background The reproducibility of radiomic features (RFs) is essential in lung nodule diagnosis. This study aimed to prospectively investigate the effects of computed tomography (CT) scanning parameters on the reproducibility of RFs in pulmonary nodules. Methods Patients with pulmonary nodules who underwent chest CT scans at the Cancer Hospital of the Chinese Academy of Medical Sciences between July 2018 and March 2019 were prospectively included in the study. Six sequences with three pairs of different scanning parameters, including the reconstruction algorithm [filtered back projection (FBP) vs. 50% adaptive statistical iterative reconstruction-V (ASiR-V)], radiation dose (low dose vs. standard dose), and contrast agent [contrast-enhanced (CE) CT vs. non-contrast enhanced (NE) CT], were used for each patient. When one of the scanning parameters was changed, the other two remained fixed. The nodules were classified into pure ground-glass nodules (pGGNs), part-solid nodules (PSNs), and solid nodules (SNs) according to the nodule consistency. RFs with an intraclass correlation coefficient (ICC) >0.75 were considered to have good retest reliability. All the RF values of the different scanning parameters and nodule consistency were investigated and compared. Results A total of 150 pulmonary nodules, including 50 pGGNs, 50 PSNs, and 50 SNs, in 96 patients (mean age: 52±10 years; 62 females) were included in the study. In total, 320 RFs with an ICC >0.75 were evaluated. The proportion of RFs showed significant difference between FBP and 50% ASiR-V, low dose and standard dose, and CE and NE CT scans was 38.4% (123/320), 63.1% (202/320) and 54.1% (173/320), respectively. The radiation dose and contrast agent affected more RFs than the reconstruction algorithm (both P<0.001). In the subgroup analysis of nodule consistency, regardless of changes in the reconstruction algorithms, radiation doses, or contrast agents, the RFs showed significant difference among the pGGNs, PSNs, and SNs (all P<0.001). Conclusions The scanning parameters affected the reproducibility of the RFs, and nodules of different consistency were affected differently. The effects of these parameters should be fully considered in radiomic analysis.
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Affiliation(s)
- Shou-Xin Yang
- Department of Diagnostic Radiology, National Cancer Center/National Clinical Research Center for Cancer/Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
- Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Department of Radiology, Peking University Cancer Hospital & Institute, Beijing, China
| | - Meng Li
- Department of Diagnostic Radiology, National Cancer Center/National Clinical Research Center for Cancer/Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
| | - Li-Na Zhou
- Department of Diagnostic Radiology, National Cancer Center/National Clinical Research Center for Cancer/Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
| | - Dong-Hui Hou
- Department of Diagnostic Radiology, National Cancer Center/National Clinical Research Center for Cancer/Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
| | - Li Zhang
- Department of Diagnostic Radiology, National Cancer Center/National Clinical Research Center for Cancer/Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
| | - Ning Wu
- Department of Diagnostic Radiology, National Cancer Center/National Clinical Research Center for Cancer/Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
- Department of Nuclear Medicine (PET-CT Center), National Cancer Center/National Clinical Research Center for Cancer/Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
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Sghedoni R, Origgi D, Cucurachi N, Minischetti GC, Alio D, Savini G, Botta F, Marzi S, Aiello M, Rancati T, Cusumano D, Politi LS, Didonna V, Massafra R, Petrillo A, Esposito A, Imparato S, Anemoni L, Bortolotto C, Preda L, Boldrini L. Stability of radiomic features in magnetic resonance imaging of the female pelvis: A multicentre phantom study. Phys Med 2025; 130:104895. [PMID: 39793255 DOI: 10.1016/j.ejmp.2025.104895] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/17/2024] [Revised: 12/18/2024] [Accepted: 01/03/2025] [Indexed: 01/13/2025] Open
Affiliation(s)
- Roberto Sghedoni
- Medical Physics Unit, Azienda USL - IRCCS di Reggio Emilia, Viale Risorgimento 80, Reggio Emilia, Italy.
| | - Daniela Origgi
- Medical Physics Unit, IEO, European Institute of Oncology, IRCCS, Via Ripamonti 435, Milano, Italy
| | - Noemi Cucurachi
- Medical Physics Unit, Azienda USL - IRCCS di Reggio Emilia, Viale Risorgimento 80, Reggio Emilia, Italy
| | - Giuseppe Castiglioni Minischetti
- Medical Physics Unit, IEO, European Institute of Oncology, IRCCS, Via Ripamonti 435, Milano, Italy; School of Medical Physics, University of Milan, Via Celoria 16, 20133 Milan, Italy
| | - Davide Alio
- Medical Physics Unit, IEO, European Institute of Oncology, IRCCS, Via Ripamonti 435, Milano, Italy; School of Medical Physics, University of Milan, Via Celoria 16, 20133 Milan, Italy
| | - Giovanni Savini
- Department of Biomedical Sciences, Humanitas University, Via R. Levi Montalcini 4, 20072, Pieve Emanuele, Milan, Italy; Neuroradiology Unit, IRCCS Humanitas Research Hospital, Via Manzoni 56, 20089 Rozzano, Milan, Italy
| | - Francesca Botta
- Medical Physics Unit, IEO, European Institute of Oncology, IRCCS, Via Ripamonti 435, Milano, Italy
| | - Simona Marzi
- Medical Physics Laboratory, IRCCS Regina Elena National Cancer Institute, Via Elio Chianesi 53, 00144 Roma, Italy
| | - Marco Aiello
- IRCCS SYNLAB SDN, Via Francesco Crispi, 8, 80121 Napoli, Italy
| | - Tiziana Rancati
- Data Science Unit, Fondazione IRCCS Istituto Nazionale dei Tumori, Via Giacomo Venezian, 1, 20133 Milano, Italy
| | - Davide Cusumano
- UO Fisica Medica e Radioprotezione, Mater Olbia Hospital, SS 125 Orientale Sarda, 07026 Olbia, Italy
| | - Letterio Salvatore Politi
- Department of Biomedical Sciences, Humanitas University, Via R. Levi Montalcini 4, 20072, Pieve Emanuele, Milan, Italy; Neuroradiology Unit, IRCCS Humanitas Research Hospital, Via Manzoni 56, 20089 Rozzano, Milan, Italy
| | - Vittorio Didonna
- I.R.C.C.S. Istituto Tumori "Giovanni Paolo II", Viale Orazio Flacco 65, Bari 70124, Italy
| | - Raffaella Massafra
- I.R.C.C.S. Istituto Tumori "Giovanni Paolo II", Viale Orazio Flacco 65, Bari 70124, Italy
| | - Antonella Petrillo
- Istituto Nazionale Tumori IRCCS Fondazione Pascale, Via M. Semmola, 52, 80131 Napoli, Italy
| | - Antonio Esposito
- Experimetal Imaging Center, IRCCS San Raffaele Scientific Institute, Via Olgettina, 60, 20132 Milano, Italy; Vita-Salute San Raffaele University, School of Medicine, Via Olgettina, 58, 20132 Milano, Italy
| | - Sara Imparato
- Unità di Diagnostica per Immagini, CNAO, Via Erminio Borloni, 1, 27100 Pavia, Italy
| | - Luca Anemoni
- Unità di Diagnostica per Immagini, CNAO, Via Erminio Borloni, 1, 27100 Pavia, Italy
| | - Chandra Bortolotto
- Diagnostic Imaging and Radiotherapy Unit, Department of Clinical, Surgical, Diagnostic, and Pediatric Sciences, University of Pavia, Viale Golgi 19, 27100 Pavia, Italy; Radiology Institute, Fondazione IRCCS Policlinico San Matteo, Viale Golgi 19, 27100 Pavia, Italy
| | - Lorenzo Preda
- Diagnostic Imaging and Radiotherapy Unit, Department of Clinical, Surgical, Diagnostic, and Pediatric Sciences, University of Pavia, Viale Golgi 19, 27100 Pavia, Italy; Radiology Institute, Fondazione IRCCS Policlinico San Matteo, Viale Golgi 19, 27100 Pavia, Italy
| | - Luca Boldrini
- Dipartimento di Diagnostica per Immagini e Radioterapia Oncologica, Fondazione Policlinico Universitario "A. Gemelli" IRCCS, Largo Agostino Gemelli 8, 00168 Roma, Italy
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9
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Wennmann M, Rotkopf LT, Bauer F, Hielscher T, Kächele J, Mai EK, Weinhold N, Raab M, Goldschmidt H, Weber TF, Schlemmer H, Delorme S, Maier‐Hein K, Neher P. Reproducible Radiomics Features from Multi-MRI-Scanner Test-Retest-Study: Influence on Performance and Generalizability of Models. J Magn Reson Imaging 2025; 61:676-686. [PMID: 38733369 PMCID: PMC11706307 DOI: 10.1002/jmri.29442] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2024] [Revised: 03/29/2024] [Accepted: 04/01/2024] [Indexed: 05/13/2024] Open
Abstract
BACKGROUND Radiomics models trained on data from one center typically show a decline of performance when applied to data from external centers, hindering their introduction into large-scale clinical practice. Current expert recommendations suggest to use only reproducible radiomics features isolated by multiscanner test-retest experiments, which might help to overcome the problem of limited generalizability to external data. PURPOSE To evaluate the influence of using only a subset of robust radiomics features, defined in a prior in vivo multi-MRI-scanner test-retest-study, on the performance and generalizability of radiomics models. STUDY TYPE Retrospective. POPULATION Patients with monoclonal plasma cell disorders. Training set (117 MRIs from center 1); internal test set (42 MRIs from center 1); external test set (143 MRIs from center 2-8). FIELD STRENGTH/SEQUENCE 1.5T and 3.0T; T1-weighted turbo spin echo. ASSESSMENT The task for the radiomics models was to predict plasma cell infiltration, determined by bone marrow biopsy, noninvasively from MRI. Radiomics machine learning models, including linear regressor, support vector regressor (SVR), and random forest regressor (RFR), were trained on data from center 1, using either all radiomics features, or using only reproducible radiomics features. Models were tested on an internal (center 1) and a multicentric external data set (center 2-8). STATISTICAL TESTS Pearson correlation coefficient r and mean absolute error (MAE) between predicted and actual plasma cell infiltration. Fisher's z-transformation, Wilcoxon signed-rank test, Wilcoxon rank-sum test; significance level P < 0.05. RESULTS When using only reproducible features compared with all features, the performance of the SVR on the external test set significantly improved (r = 0.43 vs. r = 0.18 and MAE = 22.6 vs. MAE = 28.2). For the RFR, the performance on the external test set deteriorated when using only reproducible instead of all radiomics features (r = 0.33 vs. r = 0.44, P = 0.29 and MAE = 21.9 vs. MAE = 20.5, P = 0.10). CONCLUSION Using only reproducible radiomics features improves the external performance of some, but not all machine learning models, and did not automatically lead to an improvement of the external performance of the overall best radiomics model. LEVEL OF EVIDENCE: 3 TECHNICAL EFFICACY Stage 2.
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Affiliation(s)
- Markus Wennmann
- Division of RadiologyGerman Cancer Research Center (DKFZ) HeidelbergHeidelbergGermany
- Diagnostic and Interventional RadiologyUniversity Hospital HeidelbergHeidelbergGermany
| | - Lukas T. Rotkopf
- Division of RadiologyGerman Cancer Research Center (DKFZ) HeidelbergHeidelbergGermany
| | - Fabian Bauer
- Division of RadiologyGerman Cancer Research Center (DKFZ) HeidelbergHeidelbergGermany
| | - Thomas Hielscher
- Division of BiostatisticsGerman Cancer Research Center (DKFZ) HeidelbergHeidelbergGermany
| | - Jessica Kächele
- Division of Medical Image ComputingGerman Cancer Research Center (DKFZ) HeidelbergHeidelbergGermany
- German Cancer Consortium (DKTK)Partner Site HeidelbergHeidelbergGermany
| | - Elias K. Mai
- Heidelberg Myeloma Center, Department of MedicineUniversity Hospital HeidelbergHeidelbergGermany
| | - Niels Weinhold
- Heidelberg Myeloma Center, Department of MedicineUniversity Hospital HeidelbergHeidelbergGermany
| | - Marc‐Steffen Raab
- Heidelberg Myeloma Center, Department of MedicineUniversity Hospital HeidelbergHeidelbergGermany
| | - Hartmut Goldschmidt
- Heidelberg Myeloma Center, Department of MedicineUniversity Hospital HeidelbergHeidelbergGermany
- National Center for Tumor Diseases (NCT) HeidelbergHeidelbergGermany
| | - Tim F. Weber
- Diagnostic and Interventional RadiologyUniversity Hospital HeidelbergHeidelbergGermany
| | - Heinz‐Peter Schlemmer
- Division of RadiologyGerman Cancer Research Center (DKFZ) HeidelbergHeidelbergGermany
- National Center for Tumor Diseases (NCT) HeidelbergHeidelbergGermany
| | - Stefan Delorme
- Division of RadiologyGerman Cancer Research Center (DKFZ) HeidelbergHeidelbergGermany
| | - Klaus Maier‐Hein
- Division of Medical Image ComputingGerman Cancer Research Center (DKFZ) HeidelbergHeidelbergGermany
- German Cancer Consortium (DKTK)Partner Site HeidelbergHeidelbergGermany
- Pattern Analysis and Learning Group, Department of Radiation OncologyUniversity Hospital HeidelbergHeidelbergGermany
| | - Peter Neher
- Division of Medical Image ComputingGerman Cancer Research Center (DKFZ) HeidelbergHeidelbergGermany
- German Cancer Consortium (DKTK)Partner Site HeidelbergHeidelbergGermany
- Pattern Analysis and Learning Group, Department of Radiation OncologyUniversity Hospital HeidelbergHeidelbergGermany
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10
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Huchthausen C, Shi M, de Sousa GLA, Colen J, Shelley E, Larner J, Janowski E, Wijesooriya K. Evaluation of radiomic feature harmonization techniques for benign and malignant pulmonary nodules. ARXIV 2025:arXiv:2412.16758v2. [PMID: 39876938 PMCID: PMC11774441] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Subscribe] [Scholar Register] [Indexed: 01/31/2025]
Abstract
Background Conventional methods for detecting lung cancer early are often qualitative and subject to interpretation. Radiomics provides quantitative characteristics of pulmonary nodules (PNs) in medical images, but variability in medical image acquisition is an obstacle to consistent clinical application of these quantitative features. Correcting radiomic features' dependency on acquisition parameters is problematic when combining data from benign and malignant PNs, as is necessary when the goal is to diagnose lung cancer, because acquisition effects may differ between them due to their biological differences. Purpose We evaluated whether we must account for biological differences between benign and malignant PNs when correcting the dependency of radiomic features on acquisition parameters, and we compared methods of doing this using ComBat harmonization. Methods This study used a dataset of 567 clinical chest CT scans containing both malignant and benign PNs. Scans were grouped as benign, malignant, or lung cancer screening (mixed benign and malignant). Preprocessing and feature extraction from ROIs were performed using PyRadiomics. Optimized Permutation Nested ComBat harmonization was performed on extracted features to account for variability in four imaging protocols: contrast enhancement, scanner manufacturer, acquisition voltage, focal spot size. Three methods were compared: harmonizing all data collectively in the standard manner, harmonizing all data with a covariate to preserve distinctions between subgroups, and harmonizing subgroups separately. A significant (p ≤ 0.05) Kruskal-Wallis test determined whether harmonization removed a feature's dependency on an acquisition parameter. A LASSO-SVM pipeline was trained using acquisition-independent radiomic features to predict whether PNs were malignant or benign. To evaluate the predictive information made available by each harmonization method, the trained harmonization estimators and predictive model were applied to a corresponding unseen test set. Harmonization and predictive performance metrics were assessed over 10 trials of 5-fold cross validation. Results Kruskal-Wallis defined an average 2.1% of features (95% CI: 1.9-2.4%) as acquisition-independent when data were harmonized collectively, 27.3% of features (95% CI: 25.7-28.9%) as acquisition-independent when harmonized with a covariate, and 90.9% of features (95% CI: 90.4-91.5%) as acquisition-independent when harmonized separately. LASSO-SVM models trained on data harmonized separately or with a covariate had higher ROC-AUC for lung cancer screening scans than models trained on data harmonized without distinction between benign and malignant tissues (Delong test, Holm-Bonferroni adjusted p ≤ 0.05). There was not a conclusive difference in ROC-AUC between models trained on data harmonized separately and models trained on data harmonized with a covariate. Conclusions Radiomic features of benign and malignant PNs require different corrective transformations to recover acquisition-independent distributions. This can be done using separate harmonization or harmonization with a covariate. Separate harmonization enabled the greatest number of predictive features to be used in a machine learning model to retrospectively detect lung cancer. Features harmonized separately and features harmonized with a covariate enabled predictive models to achieve similar performance on lung cancer screening scans.
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Affiliation(s)
| | - Menglin Shi
- Department of Biomedical Engineering, Northwestern University
| | | | - Jonathan Colen
- Joint Institute on Advanced Computing for Environmental Sciences, Old Dominion University
- Hampton Roads Biomedical Research Consortium
| | | | - James Larner
- Department of Radiation Oncology, University of Virginia
| | | | - Krishni Wijesooriya
- Department of Physics, University of Virginia
- Department of Radiation Oncology, University of Virginia
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11
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Lippitt WL, Maier LA, Fingerlin TE, Lynch DA, Yadav R, Rieck J, Hill AC, Liao SY, Mroz MM, Barkes BQ, Ju Chae K, Jeon Hwang H, Carlson NE. The textures of sarcoidosis: quantifying lung disease through variograms. Phys Med Biol 2025; 70:025004. [PMID: 39700622 PMCID: PMC11726058 DOI: 10.1088/1361-6560/ada19c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2024] [Revised: 11/13/2024] [Accepted: 12/19/2024] [Indexed: 12/21/2024]
Abstract
Objective. Sarcoidosis is a granulomatous disease affecting the lungs in over 90% of patients. Qualitative assessment of chest CT by radiologists is standard clinical practice and reliable quantification of disease from CT would support ongoing efforts to identify sarcoidosis phenotypes. Standard imaging feature engineering techniques such as radiomics suffer from extreme sensitivity to image acquisition and processing, potentially impeding generalizability of research to clinical populations. In this work, we instead investigate approaches to engineering variogram-based features with the intent to identify a robust, generalizable pipeline for image quantification in the study of sarcoidosis.Approach. For a cohort of more than 300 individuals with sarcoidosis, we investigated 24 feature engineering pipelines differing by decisions for image registration to a template lung, empirical and model variogram estimation methods, and feature harmonization for CT scanner model, and subsequently 48 sets of phenotypes produced through unsupervised clustering. We then assessed sensitivity of engineered features, phenotypes produced through unsupervised clustering, and sarcoidosis disease signal strength to pipeline.Main results. We found that variogram features had low to mild association with scanner model and associations were reduced by image registration. For each feature type, features were also typically robust to all pipeline decisions except image registration. Strength of disease signal as measured by association with pulmonary function testing and some radiologist visual assessments was strong (optimistic AUC ≈ 0.9,p≪0.0001in models for architectural distortion, conglomerate mass, fibrotic abnormality, and traction bronchiectasis) and fairly consistent across engineering approaches regardless of registration and harmonization for CT scanner.Significance. Variogram-based features appear to be a suitable approach to image quantification in support of generalizable research in pulmonary sarcoidosis.
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Affiliation(s)
- William L Lippitt
- Dept of Biostatistics and Informatics, Uni. of Colorado Anschutz Medical Campus, Aurora, CO, United States of America
| | - Lisa A Maier
- Dept of Medicine, National Jewish Health, Denver, CO, United States of America
- Dept of Medicine, Uni. of Colorado Anschutz Medical Campus, Aurora, CO, United States of America
- Dept of Environmental and Occupational Health, Uni. of Colorado Anschutz Medical Campus, Aurora, CO, United States of America
| | - Tasha E Fingerlin
- Dept of Biostatistics and Informatics, Uni. of Colorado Anschutz Medical Campus, Aurora, CO, United States of America
- Dept of Immunology and Genomic Medicine, National Jewish Health, Denver, CO, United States of America
| | - David A Lynch
- Dept of Radiology, National Jewish Health, Denver, CO, United States of America
| | - Ruchi Yadav
- Dept of Diagnostic Radiology, Cleveland Clinic, Cleveland, OH, United States of America
| | - Jared Rieck
- Dept of Biostatistics and Informatics, Uni. of Colorado Anschutz Medical Campus, Aurora, CO, United States of America
| | - Andrew C Hill
- Dept of Biostatistics and Informatics, Uni. of Colorado Anschutz Medical Campus, Aurora, CO, United States of America
| | - Shu-Yi Liao
- Dept of Medicine, National Jewish Health, Denver, CO, United States of America
- Dept of Medicine, Uni. of Colorado Anschutz Medical Campus, Aurora, CO, United States of America
| | - Margaret M Mroz
- Dept of Medicine, National Jewish Health, Denver, CO, United States of America
| | - Briana Q Barkes
- Dept of Medicine, National Jewish Health, Denver, CO, United States of America
| | - Kum Ju Chae
- Dept of Radiology, Research Institute of Clinical Medicine of Jeonbuk National University-Biomedical Research Institute of Jeonbuk National University Hospital, Jeonju, Jeollabuk-do, Republic of Korea
| | - Hye Jeon Hwang
- Dept of Radiology and Research Institute of Radiology, University of Ulsan College of Medicine, Asan Medical Center, 86 Asanbyeongwon-Gil, Songpa-Gu, Seoul, Republic of Korea
| | - Nichole E Carlson
- Dept of Biostatistics and Informatics, Uni. of Colorado Anschutz Medical Campus, Aurora, CO, United States of America
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12
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Shi S, Liu R, Zhou J, Liu J, Lin H, Mo J, Zhang J, Diao X, Luo Y, Huang B, Feng ST. Development and validation of a CT-based radiomics model to predict survival-graded fibrosis in pancreatic ductal adenocarcinoma. Int J Surg 2025; 111:950-961. [PMID: 39172712 PMCID: PMC11745594 DOI: 10.1097/js9.0000000000002059] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2024] [Accepted: 08/11/2024] [Indexed: 08/24/2024]
Abstract
BACKGROUND Tumor fibrosis plays an important role in chemotherapy resistance in pancreatic ductal adenocarcinoma (PDAC); however, there remains a contradiction in the prognostic value of fibrosis. The authors aimed to investigate the relationship between tumor fibrosis and survival in patients with PDAC, classify patients into high- and low-fibrosis groups, and develop and validate a CT-based radiomics model to non-invasively predict fibrosis before treatment. MATERIALS AND METHODS This retrospective, bicentric study included 295 patients with PDAC without any treatments before surgery. Tumor fibrosis was assessed using the collagen fraction (CF). Cox regression analysis was used to evaluate the associations of CF with overall survival (OS) and disease-free survival (DFS). Receiver operating characteristic (ROC) analyses were used to determine the rounded threshold of CF. An integrated model (IM) was developed by incorporating selected radiomic features and clinical-radiological characteristics. The predictive performance was validated in the test cohort (Center 2). RESULTS The CFs were 38.22±6.89% and 38.44±8.66% in center 1 (131 patients, 83 males) and center 2 (164 patients, 100 males), respectively ( P =0.814). Multivariable Cox regression revealed that CF was an independent risk factor in the OS and DFS analyses at both centers. ROCs revealed that 40% was the rounded cut-off value of CF. IM predicted CF with areas under the curves (AUCs) of 0.829 (95% CI: 0.753-0.889) and 0.751 (95% CI: 0.677-0.815) in the training and test cohorts, respectively. Decision curve analyses revealed that IM outperformed radiomics model and clinical-radiological model for CF prediction in both cohorts. CONCLUSIONS Tumor fibrosis was an independent risk factor for survival of patients with PDAC, and a rounded cut-off value of 40% provided a good differentiation of patient prognosis. The model combining CT-based radiomics and clinical-radiological features can satisfactorily predict survival-grade fibrosis in patients with PDAC.
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Affiliation(s)
- Siya Shi
- Department of Radiology, The First Affiliated Hospital, Sun Yat-sen University
| | - Ruihao Liu
- Marshall Laboratory of Biomedical Engineering, Shenzhen University
- Medical AI Lab, School of Biomedical Engineering, Shenzhen University Medical School, Shenzhen University
- National-Regional Key Technology Engineering Laboratory for Medical Ultrasound, Guangdong Key Laboratory for Biomedical Measurements and Ultrasound Imaging, Medical School, Shenzhen University, Shenzhen, Guangdong, China
| | - Jian Zhou
- State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy, Department of Radiology, Sun Yat-sen University Cancer Center, Guangzhou
- South China Hospital, Medical School, Shenzhen University
| | - Jiawei Liu
- Department of Radiology, The First Affiliated Hospital, Sun Yat-sen University
| | - Hongxin Lin
- Marshall Laboratory of Biomedical Engineering, Shenzhen University
- Medical AI Lab, School of Biomedical Engineering, Shenzhen University Medical School, Shenzhen University
| | - Junyang Mo
- Marshall Laboratory of Biomedical Engineering, Shenzhen University
- Medical AI Lab, School of Biomedical Engineering, Shenzhen University Medical School, Shenzhen University
| | - Jian Zhang
- Shenzhen-Hong Kong Institute of Brain Science-Shenzhen Fundamental Research Institutions
- Shenzhen University Medical School, Shenzhen University
| | - Xianfen Diao
- Marshall Laboratory of Biomedical Engineering, Shenzhen University
- Medical AI Lab, School of Biomedical Engineering, Shenzhen University Medical School, Shenzhen University
- National-Regional Key Technology Engineering Laboratory for Medical Ultrasound, Guangdong Key Laboratory for Biomedical Measurements and Ultrasound Imaging, Medical School, Shenzhen University, Shenzhen, Guangdong, China
| | - Yanji Luo
- Department of Radiology, The First Affiliated Hospital, Sun Yat-sen University
| | - Bingsheng Huang
- Marshall Laboratory of Biomedical Engineering, Shenzhen University
- Medical AI Lab, School of Biomedical Engineering, Shenzhen University Medical School, Shenzhen University
- Shenzhen-Hong Kong Institute of Brain Science-Shenzhen Fundamental Research Institutions
| | - Shi-Ting Feng
- Department of Radiology, The First Affiliated Hospital, Sun Yat-sen University
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13
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Sako C, Duan C, Maresca K, Kent S, Schmidt TG, Aerts HJWL, Parikh RB, Simon GR, Jordan P. Real-World and Clinical Trial Validation of a Deep Learning Radiomic Biomarker for PD-(L)1 Immune Checkpoint Inhibitor Response in Advanced Non-Small Cell Lung Cancer. JCO Clin Cancer Inform 2024; 8:e2400133. [PMID: 39671539 DOI: 10.1200/cci.24.00133] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2024] [Revised: 09/17/2024] [Accepted: 10/18/2024] [Indexed: 12/15/2024] Open
Abstract
PURPOSE This study developed and validated a novel deep learning radiomic biomarker to estimate response to immune checkpoint inhibitor (ICI) therapy in advanced non-small cell lung cancer (NSCLC) using real-world data (RWD) and clinical trial data. MATERIALS AND METHODS Retrospective RWD of 1,829 patients with advanced NSCLC treated with PD-(L)1 ICIs were collected from 10 academic and community institutions in the United States and Europe. The RWD included data sets for discovery (Data Set A-Discovery, n = 1,173) and independent test (Data Set B, n = 458). A radiomic pipeline, containing a deep learning feature extractor and a survival model, generated the computed tomography (CT) response score (CTRS) applied to the pretreatment routine CT/positron emission tomography (PET)-CT scan. An enhanced CTRS (eCTRS) also incorporated age, sex, treatment line, and lesion annotations. Performance was evaluated against progression-free survival (PFS) and overall survival (OS). Biomarker generalizability was further evaluated using a secondary analysis of a prospective clinical trial (ClinicalTrials.gov identifier: NCT02573259) evaluating the PD-1 inhibitor sasanlimab in second or later line of treatment (Data Set C, n = 54). RESULTS In RWD Test Data Set B, the CTRS identified patients with a high probability of response to ICI with a PFS hazard ratio (HR) of 0.46 (95% CI, 0.26 to 0.82) and an OS HR of 0.50 (95% CI, 0.28 to 0.92) in the first-line ICI monotherapy cohort, after adjustment for baseline covariates including the PD-L1 tumor proportion score. In Clinical Trial Data Set C, the CTRS demonstrated an adjusted PFS HR of 1.03 (95% CI, 0.43 to 2.47) and an OS HR of 0.33 (95% CI, 0.14 to 0.91). The CTRS and eCTRS outperformed traditional imaging biomarkers of lesion size in PFS and OS for RWD Test Data Set B and in OS for the Clinical Trial Data Set. CONCLUSION The study developed and validated a deep learning radiomic biomarker using pretreatment routine CT/PET-CT scans to identify ICI benefit in advanced NSCLC.
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14
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Lee SB, Hong Y, Cho YJ, Jeong D, Lee J, Choi JW, Hwang JY, Lee S, Choi YH, Cheon JE. Enhancing Radiomics Reproducibility: Deep Learning-Based Harmonization of Abdominal Computed Tomography (CT) Images. Bioengineering (Basel) 2024; 11:1212. [PMID: 39768030 PMCID: PMC11673047 DOI: 10.3390/bioengineering11121212] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2024] [Revised: 11/27/2024] [Accepted: 11/28/2024] [Indexed: 01/11/2025] Open
Abstract
We assessed the feasibility of using deep learning-based image harmonization to improve the reproducibility of radiomics features in abdominal CT scans. In CT imaging, harmonization adjusts images from different institutions to ensure consistency despite variations in scanners and acquisition protocols. This process is essential because such differences can lead to variability in radiomics features, affecting reproducibility and accuracy. Harmonizing images minimizes these inconsistencies, supporting more reliable and clinically applicable results across diverse settings. A pre-trained harmonization algorithm was applied to 63 dual-energy abdominal CT images, which were reconstructed into four different types, and 10 regions of interest (ROIs) were analyzed. From the original 455 radiomics features per ROI, 387 were used after excluding redundant features. Reproducibility was measured using the intraclass correlation coefficient (ICC), with a threshold of ICC ≥ 0.85 indicating acceptable reproducibility. The region-based analysis revealed significant improvements in reproducibility post-harmonization, especially in vessel features, which increased from 14% to 69%. Other regions, including the spleen, kidney, muscle, and liver parenchyma, also saw notable improvements, although air reproducibility slightly decreased from 95% to 94%, impacting only a few features. In patient-based analysis, reproducible features increased from 18% to 65%, with an average of 179 additional reproducible features per patient after harmonization. These results demonstrate that deep learning-based harmonization can significantly enhance the reproducibility of radiomics features in abdominal CT, offering promising potential for advancing radiomics development and its clinical applications.
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Affiliation(s)
- Seul Bi Lee
- Department of Radiology, Seoul National University Hospital, 101 Daehak-ro, Jongno-gu, Seoul 03080, Republic of Korea; (S.B.L.); (J.W.C.); (J.Y.H.); (S.L.); (Y.H.C.); (J.-E.C.)
| | - Youngtaek Hong
- CONNECT-AI R&D Center, Yonsei University College of Medicine, Seoul 03080, Republic of Korea; (Y.H.); (D.J.); (J.L.)
| | - Yeon Jin Cho
- Department of Radiology, Seoul National University Hospital, 101 Daehak-ro, Jongno-gu, Seoul 03080, Republic of Korea; (S.B.L.); (J.W.C.); (J.Y.H.); (S.L.); (Y.H.C.); (J.-E.C.)
- Department of Radiology, Seoul National University College of Medicine, 103 Daehak-ro, Jongno-gu, Seoul 03080, Republic of Korea
| | - Dawun Jeong
- CONNECT-AI R&D Center, Yonsei University College of Medicine, Seoul 03080, Republic of Korea; (Y.H.); (D.J.); (J.L.)
- Brain Korea 21 PLUS Project for Medical Science, Yonsei University, Seoul 03080, Republic of Korea
| | - Jina Lee
- CONNECT-AI R&D Center, Yonsei University College of Medicine, Seoul 03080, Republic of Korea; (Y.H.); (D.J.); (J.L.)
- Brain Korea 21 PLUS Project for Medical Science, Yonsei University, Seoul 03080, Republic of Korea
| | - Jae Won Choi
- Department of Radiology, Seoul National University Hospital, 101 Daehak-ro, Jongno-gu, Seoul 03080, Republic of Korea; (S.B.L.); (J.W.C.); (J.Y.H.); (S.L.); (Y.H.C.); (J.-E.C.)
| | - Jae Yeon Hwang
- Department of Radiology, Seoul National University Hospital, 101 Daehak-ro, Jongno-gu, Seoul 03080, Republic of Korea; (S.B.L.); (J.W.C.); (J.Y.H.); (S.L.); (Y.H.C.); (J.-E.C.)
| | - Seunghyun Lee
- Department of Radiology, Seoul National University Hospital, 101 Daehak-ro, Jongno-gu, Seoul 03080, Republic of Korea; (S.B.L.); (J.W.C.); (J.Y.H.); (S.L.); (Y.H.C.); (J.-E.C.)
- Department of Radiology, Seoul National University College of Medicine, 103 Daehak-ro, Jongno-gu, Seoul 03080, Republic of Korea
| | - Young Hun Choi
- Department of Radiology, Seoul National University Hospital, 101 Daehak-ro, Jongno-gu, Seoul 03080, Republic of Korea; (S.B.L.); (J.W.C.); (J.Y.H.); (S.L.); (Y.H.C.); (J.-E.C.)
- Department of Radiology, Seoul National University College of Medicine, 103 Daehak-ro, Jongno-gu, Seoul 03080, Republic of Korea
| | - Jung-Eun Cheon
- Department of Radiology, Seoul National University Hospital, 101 Daehak-ro, Jongno-gu, Seoul 03080, Republic of Korea; (S.B.L.); (J.W.C.); (J.Y.H.); (S.L.); (Y.H.C.); (J.-E.C.)
- Department of Radiology, Seoul National University College of Medicine, 103 Daehak-ro, Jongno-gu, Seoul 03080, Republic of Korea
- Institute of Radiation Medicine, Seoul National University Medical Research Center, 103 Daehak-ro, Jongno-gu, Seoul 03080, Republic of Korea
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15
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Humphries SM, Chung A, Swigris JJ, Oh AS, Walsh SLF, Lynch DA, Goldin JG, Kim GHJ. Quantification of Interstitial Lung Diseases, From the AJR Special Series on Quantitative Imaging. AJR Am J Roentgenol 2024. [PMID: 39564907 DOI: 10.2214/ajr.24.32053] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2024]
Abstract
High-resolution CT (HRCT) plays an important role in diagnosing and monitoring interstitial lung diseases (ILDs). Despite advances, predicting disease progression and treatment response remains challenging. HRCT enables noninvasive visualization and classification of patterns of lung injury and assessment of disease extent. Visual estimation of CT extent of fibrotic lung disease is an independent predictor of mortality and progression, but is subjective, with only modest interobserver agreement for radiologic interpretation of ILD. Machine learning-based textural analysis of fibrosis extent on baseline and serial HRCT scans shows robust correlations with physiologic measures and strong association with risk of disease progression or mortality across various fibrosing ILDs. In idiopathic pulmonary fibrosis, quantitative CT (QCT) assessment is associated with physiologic impairment and risk of progression and death, and increasing severity of fibrosis on longitudinal evaluation is associated with increased risk of progression and death. Similar results have been noted for fibrotic hypersensitivity pneumonitis and connective tissue disease. This review focuses on QCT techniques for ILDs. We describe the clinical need for quantification of lung disease and illustrate the role of conventional visual evaluation and of QCT approaches in defining disease severity, prognosis, and longitudinal progression, both in established disease and in preclinical interstitial abnormality.
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Affiliation(s)
| | - Augustine Chung
- Division of Pulmonary and Critical Care, Department of Medicine, University of California, Los Angeles, Los Angeles, CA USA
| | - Jeffrey J Swigris
- Division of Pulmonary and Critical Care Medicine, National Jewish Health, Denver, CO USA
| | - Andrea S Oh
- Department of Radiology, University of California, Los Angeles, Los Angeles, CA USA
| | - Simon L F Walsh
- National Heart and Lung Institute, Imperial College, London, UK
| | - David A Lynch
- Department of Radiology, National Jewish Health, Denver, CO USA
| | - Jonathan G Goldin
- Department of Radiology, University of California, Los Angeles, Los Angeles, CA USA
| | - Grace Hyun J Kim
- Department of Radiology, University of California, Los Angeles, Los Angeles, CA USA
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16
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Zhao B, Dercle L, Yang H, Riely GJ, Kris MG, Schwartz LH. Annotated test-retest dataset of lung cancer CT scan images reconstructed at multiple imaging parameters. Sci Data 2024; 11:1259. [PMID: 39567508 PMCID: PMC11579286 DOI: 10.1038/s41597-024-04085-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2024] [Accepted: 11/05/2024] [Indexed: 11/22/2024] Open
Abstract
Quantitative imaging biomarkers (QIB) are increasingly used in clinical research to advance precision medicine approaches in oncology. Computed tomography (CT) is a modality of choice for cancer diagnosis, prognosis, and response assessment due to its reliability and global accessibility. Here, we contribute to the cancer imaging community through The Cancer Imaging Archive (TCIA) by providing investigator-initiated, same-day repeat CT scan images of 32 non-small cell lung cancer (NSCLC) patients, along with radiologist-annotated lesion contours as a reference standard. Each scan was reconstructed into 6 image settings using various combinations of three slice thicknesses (1.25 mm, 2.5 mm, 5 mm) and two reconstruction kernels (lung, standard; GE CT equipment), which spans a wide range of CT imaging reconstruction parameters commonly used in lung cancer clinical practice and clinical trials. This holds considerable value for advancing the development of robust Radiomics, Artificial Intelligence (AI) and machine learning (ML) methods.
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Affiliation(s)
- Binsheng Zhao
- Memorial Sloan-Kettering Cancer Center, New York, NY, 10021, USA.
| | - Laurent Dercle
- Memorial Sloan-Kettering Cancer Center, New York, NY, 10021, USA
- Department of Radiology, Columbia University New York, New York, NY, 10032, USA
| | - Hao Yang
- Memorial Sloan-Kettering Cancer Center, New York, NY, 10021, USA
| | - Gregory J Riely
- Memorial Sloan-Kettering Cancer Center, New York, NY, 10021, USA
| | - Mark G Kris
- Memorial Sloan-Kettering Cancer Center, New York, NY, 10021, USA
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17
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Jung HK, Kim K, Park JE, Kim N. Image-Based Generative Artificial Intelligence in Radiology: Comprehensive Updates. Korean J Radiol 2024; 25:959-981. [PMID: 39473088 PMCID: PMC11524689 DOI: 10.3348/kjr.2024.0392] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2024] [Revised: 08/29/2024] [Accepted: 08/29/2024] [Indexed: 11/02/2024] Open
Abstract
Generative artificial intelligence (AI) has been applied to images for image quality enhancement, domain transfer, and augmentation of training data for AI modeling in various medical fields. Image-generative AI can produce large amounts of unannotated imaging data, which facilitates multiple downstream deep-learning tasks. However, their evaluation methods and clinical utility have not been thoroughly reviewed. This article summarizes commonly used generative adversarial networks and diffusion models. In addition, it summarizes their utility in clinical tasks in the field of radiology, such as direct image utilization, lesion detection, segmentation, and diagnosis. This article aims to guide readers regarding radiology practice and research using image-generative AI by 1) reviewing basic theories of image-generative AI, 2) discussing the methods used to evaluate the generated images, 3) outlining the clinical and research utility of generated images, and 4) discussing the issue of hallucinations.
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Affiliation(s)
- Ha Kyung Jung
- Department of Radiology and Research Institute of Radiology, University of Ulsan College of Medicine, Asan Medical Center, Seoul, Republic of Korea
| | - Kiduk Kim
- Department of Convergence Medicine, University of Ulsan College of Medicine, Asan Medical Center, Seoul, Republic of Korea
| | - Ji Eun Park
- Department of Radiology and Research Institute of Radiology, University of Ulsan College of Medicine, Asan Medical Center, Seoul, Republic of Korea.
| | - Namkug Kim
- Department of Radiology and Research Institute of Radiology, University of Ulsan College of Medicine, Asan Medical Center, Seoul, Republic of Korea
- Department of Convergence Medicine, University of Ulsan College of Medicine, Asan Medical Center, Seoul, Republic of Korea.
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18
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Barioni ED, Lopes SLPDC, Silvestre PR, Yasuda CL, Costa ALF. Texture Analysis in Volumetric Imaging for Dentomaxillofacial Radiology: Transforming Diagnostic Approaches and Future Directions. J Imaging 2024; 10:263. [PMID: 39590727 PMCID: PMC11595357 DOI: 10.3390/jimaging10110263] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2024] [Revised: 10/19/2024] [Accepted: 10/20/2024] [Indexed: 11/28/2024] Open
Abstract
This narrative review explores texture analysis as a valuable technique in dentomaxillofacial diagnosis, providing an advanced method for quantification and characterization of different image modalities. The traditional imaging techniques rely primarily on visual assessment, which may overlook subtle variations in tissue structure. In contrast, texture analysis uses sophisticated algorithms to extract quantitative information from imaging data, thus offering deeper insights into the spatial distribution and relationships of pixel intensities. This process identifies unique "texture signatures", serving as markers for accurately characterizing tissue changes or pathological processes. The synergy between texture analysis and radiomics allows radiologists to transcend traditional size-based or semantic descriptors, offering a comprehensive understanding of imaging data. This method enhances diagnostic accuracy, particularly for the assessment of oral and maxillofacial pathologies. The integration of texture analysis with radiomics expands the potential for precise tissue characterization by moving beyond the limitations of human eye evaluations. This article reviews the current trends and methodologies in texture analysis within the field of dentomaxillofacial imaging, highlights its practical applications, and discusses future directions for research and dental clinical practice.
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Affiliation(s)
- Elaine Dinardi Barioni
- Postgraduate Program in Dentistry, Cruzeiro do Sul University (UNICSUL), São Paulo 1506-000, SP, Brazil;
| | - Sérgio Lúcio Pereira de Castro Lopes
- Department of Diagnosis and Surgery, São José dos Campos School of Dentistry, São Paulo State University (UNESP), São José dos Campos 2245-000, SP, Brazil; (S.L.P.d.C.L.); (P.R.S.)
| | - Pedro Ribeiro Silvestre
- Department of Diagnosis and Surgery, São José dos Campos School of Dentistry, São Paulo State University (UNESP), São José dos Campos 2245-000, SP, Brazil; (S.L.P.d.C.L.); (P.R.S.)
| | - Clarissa Lin Yasuda
- Laboratory of Neuroimaging, Department of Neurology, University of Campinas (UNICAMP), Campinas 13083-970, SP, Brazil;
| | - Andre Luiz Ferreira Costa
- Postgraduate Program in Dentistry, Cruzeiro do Sul University (UNICSUL), São Paulo 1506-000, SP, Brazil;
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19
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Wang H, Xu H, Fan J, Liu J, Li L, Kong Z, Zhao H. Predictive value of radiomics for intracranial aneurysm rupture: a systematic review and meta-analysis. Front Neurosci 2024; 18:1474780. [PMID: 39445076 PMCID: PMC11496283 DOI: 10.3389/fnins.2024.1474780] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2024] [Accepted: 09/23/2024] [Indexed: 10/25/2024] Open
Abstract
Objective To systematically review the literature on radiomics for predicting intracranial aneurysm rupture and conduct a meta-analysis to obtain evidence confirming the value of radiomics in this prediction. Methods A systematic literature search was conducted in PubMed, Web of Science, Embase, and The Cochrane Library databases up to March 2024. The QUADAS-2 tool was used to assess study quality. Stata 15.0 and Review Manager 5.4.1 were used for statistical analysis. Outcomes included combined sensitivity (Sen), specificity (Spe), positive likelihood ratio (+LR), negative likelihood ratio (-LR), diagnostic odds ratio (DOR), and their 95% confidence intervals (CI), as well as pre-test and post-test probabilities. The SROC curve was plotted, and the area under the curve (AUC) was calculated. Publication bias and small-study effects were assessed using the Deeks' funnel plot. Results The 9 included studies reported 4,284 patients, with 1,411 patients with intracranial aneurysm rupture (prevalence 32.9%). The overall performance of radiomics for predicting intracranial aneurysm rupture showed a combined Sen of 0.78 (95% CI: 0.74-0.82), Spe of 0.74 (95% CI: 0.70-0.78), +LR of 3.0 (95% CI: 2.7-3.4), -LR of 0.29 (95% CI: 0.25-0.35), DOR of 10 (95% CI: 9-12), and AUC of 0.83 (95% CI: 0.79-0.86). Significant heterogeneity was observed in both Sen (I2 = 90.93, 95% CI: 89.00-92.87%) and Spe (I2 = 94.28, 95% CI: 93.21-95.34%). Conclusion Radiomics can improve the diagnostic efficacy of intracranial aneurysm rupture. More large-sample, prospective, multicenter clinical studies are needed to further evaluate its predictive value. Systematic review registration https://www.crd.york.ac.uk/PROSPERO/.
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Affiliation(s)
- Haoda Wang
- Department of Radiology, The First Hospital of Huhhot, Huhhot, China
| | - Haidong Xu
- Department of Radiology, The First Hospital of Huhhot, Huhhot, China
| | - Junsheng Fan
- Department of Radiology, The First Hospital of Huhhot, Huhhot, China
| | - Jie Liu
- Department of Radiology, The First Hospital of Huhhot, Huhhot, China
| | - Liangfu Li
- Department of Radiology, The First Hospital of Huhhot, Huhhot, China
| | - Zailiang Kong
- Department of Radiology, The First Hospital of Huhhot, Huhhot, China
| | - Hui Zhao
- Department of Radiotherapy, Affiliated Hospital of Inner Mongolia Medical University, Huhhot, China
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20
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Adachi T, Nakamura M, Matsuo Y, Karasawa K, Kokubo M, Sakamoto T, Hiraoka M, Mizowaki T. Prospective external validation of radiomics-based predictive model of distant metastasis after dynamic tumor tracking stereotactic body radiation therapy in patients with non-small-cell lung cancer: A multi-institutional analysis. J Appl Clin Med Phys 2024; 25:e14475. [PMID: 39178139 PMCID: PMC11466494 DOI: 10.1002/acm2.14475] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2024] [Accepted: 07/03/2024] [Indexed: 08/25/2024] Open
Abstract
BACKGROUND AND PURPOSE This study aims to externally validate a predictive model for distant metastasis (DM) with computed tomography (CT)-based radiomics features in prospectively enrolled non-small-cell lung cancer patients undergoing dynamic tumor-tracking stereotactic body radiation therapy (DTT-SBRT). MATERIALS AND METHODS The study collected retrospective data from 567 patients across 11 institutions as the training dataset and prospectively enrolled 42 patients from four institutions as the external test dataset. Four clinical features were collected, and 944 CT-based radiomic features were extracted from gross tumor volumes. After standardization and feature selection, DM predictive models were developed using fine and gray regression (FG) and random survival forest (RSF), incorporating clinical and radiomic features, and their combinations within the training dataset. Then, the model was applied to the test dataset, dividing patients into high- and low-risk groups based on medians of risk scores. Model performance was assessed using the concordance index (C-index), and the statistical significance between groups was evaluated using Gray's test. RESULTS In the training dataset, 122 of 567 patients (21.5%) developed DM, compared to 9 of 42 patients (21.4%) in the test dataset. In the test dataset, the C-indices of the clinical, radiomics, and hybrid models with FG were 0.559, 0.544, and 0.560, respectively, whereas those with RSF were 0.576, 0.604, and 0.627, respectively. The hybrid model with RSF, which exhibited the best predictive performance of all models, identified 7 of 23 patients (30.4%) as high risk and 2 of 19 patients (10.5%) as low risk for DM incidence in the test dataset (p = 0.116). CONCLUSION Although predictive models for DM lack significance when applied to prospectively enrolled cases undergoing DTT-lung SBRT, the model with RSF exhibits a consistent capacity to effectively classify patients at a high risk of developing DM.
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Affiliation(s)
- Takanori Adachi
- Department of Radiation Oncology and Image‐Applied TherapyGraduate School of MedicineKyoto UniversityKyotoJapan
| | - Mitsuhiro Nakamura
- Department of Radiation Oncology and Image‐Applied TherapyGraduate School of MedicineKyoto UniversityKyotoJapan
- Department of Advanced Medical PhysicsGraduate School of MedicineKyoto UniversityKyotoJapan
| | - Yukinori Matsuo
- Department of Radiation Oncology and Image‐Applied TherapyGraduate School of MedicineKyoto UniversityKyotoJapan
| | - Katsuyuki Karasawa
- Division of Radiation OncologyDepartmentof RadiologyTokyo Metropolitan Cancer and Infectious Diseases Center Komagome HospitalTokyoJapan
| | - Masaki Kokubo
- Department of Radiation OncologyKobe City Medical Center General HospitalHyogoJapan
| | - Takashi Sakamoto
- Department of Radiation OncologyKyoto Katsura HospitalKyotoJapan
| | - Masahiro Hiraoka
- Department of Radiation OncologyJapanese Red Cross Society Wakayama Medical CenterWakayamaJapan
| | - Takashi Mizowaki
- Department of Radiation Oncology and Image‐Applied TherapyGraduate School of MedicineKyoto UniversityKyotoJapan
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21
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Zhao J, Vaios E, Wang Y, Yang Z, Cui Y, Reitman ZJ, Lafata KJ, Fecci P, Kirkpatrick J, Fang Yin F, Floyd S, Wang C. Dose-Incorporated Deep Ensemble Learning for Improving Brain Metastasis Stereotactic Radiosurgery Outcome Prediction. Int J Radiat Oncol Biol Phys 2024; 120:603-613. [PMID: 38615888 DOI: 10.1016/j.ijrobp.2024.04.006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2023] [Revised: 03/19/2024] [Accepted: 04/02/2024] [Indexed: 04/16/2024]
Abstract
PURPOSE To develop a novel deep ensemble learning model for accurate prediction of brain metastasis (BM) local control outcomes after stereotactic radiosurgery (SRS). METHODS AND MATERIALS A total of 114 brain metastases (BMs) from 82 patients were evaluated, including 26 BMs that developed biopsy-confirmed local failure post-SRS. The SRS spatial dose distribution (Dmap) of each BM was registered to the planning contrast-enhanced T1 (T1-CE) magnetic resonance imaging (MRI). Axial slices of the Dmap, T1-CE, and planning target volume (PTV) segmentation (PTVseg) intersecting the BM center were extracted within a fixed field of view determined by the 60% isodose volume in Dmap. A spherical projection was implemented to transform planar image content onto a spherical surface using multiple projection centers, and the resultant T1-CE/Dmap/PTVseg projections were stacked as a 3-channel variable. Four Visual Geometry Group (VGG-19) deep encoders were used in an ensemble design, with each submodel using a different spherical projection formula as input for BM outcome prediction. In each submodel, clinical features after positional encoding were fused with VGG-19 deep features to generate logit results. The ensemble's outcome was synthesized from the 4 submodel results via logistic regression. In total, 10 model versions with random validation sample assignments were trained to study model robustness. Performance was compared with (1) a single VGG-19 encoder, (2) an ensemble with a T1-CE MRI as the sole image input after projections, and (3) an ensemble with the same image input design without clinical feature inclusion. RESULTS The ensemble model achieved an excellent area under the receiver operating characteristic curve (AUCROC: 0.89 ± 0.02) with high sensitivity (0.82 ± 0.05), specificity (0.84 ± 0.11), and accuracy (0.84 ± 0.08) results. This outperformed the MRI-only VGG-19 encoder (sensitivity: 0.35 ± 0.01, AUCROC: 0.64 ± 0.08), the MRI-only deep ensemble (sensitivity: 0.60 ± 0.09, AUCROC: 0.68 ± 0.06), and the 3-channel ensemble without clinical feature fusion (sensitivity: 0.78 ± 0.08, AUCROC: 0.84 ± 0.03). CONCLUSIONS Facilitated by the spherical image projection method, a deep ensemble model incorporating Dmap and clinical variables demonstrated excellent performance in predicting BM post-SRS local failure. Our novel approach could improve other radiation therapy outcome models and warrants further evaluation.
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Affiliation(s)
- Jingtong Zhao
- Duke University Medical Center, Durham, North Carolina
| | - Eugene Vaios
- Duke University Medical Center, Durham, North Carolina
| | - Yuqi Wang
- Duke University Medical Center, Durham, North Carolina
| | - Zhenyu Yang
- Duke University Medical Center, Durham, North Carolina
| | - Yunfeng Cui
- Duke University Medical Center, Durham, North Carolina
| | | | - Kyle J Lafata
- Duke University Medical Center, Durham, North Carolina
| | - Peter Fecci
- Duke University Medical Center, Durham, North Carolina
| | | | | | - Scott Floyd
- Duke University Medical Center, Durham, North Carolina
| | - Chunhao Wang
- Duke University Medical Center, Durham, North Carolina.
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22
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Coppes RP, van Dijk LV. Future of Team-based Basic and Translational Science in Radiation Oncology. Semin Radiat Oncol 2024; 34:370-378. [PMID: 39271272 DOI: 10.1016/j.semradonc.2024.07.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/15/2024]
Abstract
To further optimize radiotherapy, a more personalized treatment towards individual patient's risk profiles, dissecting both patient-specific tumor and normal tissue response to multimodality treatments is needed. Novel developments in radiobiology, using in vitro patient-specific complex tissue resembling 3D models and multiomics approaches at a spatial single-cell level, may provide unprecedented insight into the radiation responses of tumors and normal tissue. Here, we describe the necessary team effort, including all disciplines in radiation oncology, to integrate such data into clinical prediction models and link the relatively "big data" from the clinical practice, allowing accurate patient stratification for personalized treatment approaches.
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Affiliation(s)
- R P Coppes
- Department of Radiation Oncology, University Medical Center Groningen, University of Groningen, Groningen, Netherlands.; Department of Biomedical Sciences, University Medical Center Groningen, University of Groningen, Groningen, Netherlands..
| | - L V van Dijk
- Department of Radiation Oncology, University Medical Center Groningen, University of Groningen, Groningen, Netherlands
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23
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Zhu N, Meng X, Wang Z, Hu Y, Zhao T, Fan H, Niu F, Han J. Radiomics in Diagnosis, Grading, and Treatment Response Assessment of Soft Tissue Sarcomas: A Systematic Review and Meta-analysis. Acad Radiol 2024; 31:3982-3992. [PMID: 38772802 DOI: 10.1016/j.acra.2024.03.029] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2024] [Revised: 03/12/2024] [Accepted: 03/22/2024] [Indexed: 05/23/2024]
Abstract
RATIONALE AND OBJECTIVES To evaluate radiomics in soft tissue sarcomas (STSs) for diagnostic accuracy, grading, and treatment response assessment, with a focus on clinical relevance. METHODS In this diagnostic accuracy study, radiomics was applied using multiple MRI sequences and AI classifiers, with histopathological diagnosis as the reference standard. Statistical analysis involved meta-analysis, random-effects model, and Deeks' funnel plot asymmetry test. RESULTS Among 579 unique titles and abstracts, 24 articles were included in the systematic review, with 21 used for meta-analysis. Radiomics demonstrated a pooled sensitivity of 84% (95% CI: 80-87) and specificity of 63% (95% CI: 56-70), AUC of 0.93 for diagnosis, sensitivity of 84% (95% CI: 82-87) and specificity of 73% (95% CI: 68-77), AUC of 0.91 for grading, and sensitivity of 83% (95% CI: 67-94) and specificity of 67% (95% CI: 59-74), AUC of 0.87 for treatment response assessment. CONCLUSION Radiomics exhibits potential for accurate diagnosis, grading, and treatment response assessment in STSs, emphasizing the need for standardization and prospective trials. CLINICAL RELEVANCE STATEMENT Radiomics offers precise tools for STS diagnosis, grading, and treatment response assessment, with implications for optimizing patient care and treatment strategies in this complex malignancy.
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Affiliation(s)
- Nana Zhu
- The Department of Radiology, Tianjin Hospital, 406 Jiefang Southern Road, Tianjin, China; Graduate School, Tianjin Medical University, Tianjin, China
| | - Xianghong Meng
- The Department of Radiology, Tianjin Hospital, 406 Jiefang Southern Road, Tianjin, China
| | - Zhi Wang
- The Department of Radiology, Tianjin Hospital, 406 Jiefang Southern Road, Tianjin, China; Graduate School, Tianjin Medical University, Tianjin, China.
| | - Yongcheng Hu
- The Department of Radiology, Tianjin Hospital, 406 Jiefang Southern Road, Tianjin, China; Graduate School, Tianjin Medical University, Tianjin, China
| | - Tingting Zhao
- The Department of Radiology, Tianjin Hospital, 406 Jiefang Southern Road, Tianjin, China; Graduate School, Tianjin Medical University, Tianjin, China
| | - Hongxing Fan
- The Department of Radiology, Tianjin Hospital, 406 Jiefang Southern Road, Tianjin, China; Graduate School, Tianjin Medical University, Tianjin, China
| | - Feige Niu
- The Department of Radiology, Tianjin Hospital, 406 Jiefang Southern Road, Tianjin, China; Graduate School, Tianjin Medical University, Tianjin, China
| | - Jun Han
- The Department of Radiology, Tianjin Hospital, 406 Jiefang Southern Road, Tianjin, China; Graduate School, Tianjin University, Tianjin, China
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24
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Montagnon E, Cerny M, Hamilton V, Derennes T, Ilinca A, Elforaici MEA, Jabbour G, Rafie E, Wu A, Perdigon Romero F, Cadrin-Chênevert A, Kadoury S, Turcotte S, Tang A. Radiomics analysis of baseline computed tomography to predict oncological outcomes in patients treated for resectable colorectal cancer liver metastasis. PLoS One 2024; 19:e0307815. [PMID: 39259736 PMCID: PMC11389941 DOI: 10.1371/journal.pone.0307815] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2023] [Accepted: 07/11/2024] [Indexed: 09/13/2024] Open
Abstract
OBJECTIVE The purpose of this study was to determine and compare the performance of pre-treatment clinical risk score (CRS), radiomics models based on computed (CT), and their combination for predicting time to recurrence (TTR) and disease-specific survival (DSS) in patients with colorectal cancer liver metastases. METHODS We retrospectively analyzed a prospectively maintained registry of 241 patients treated with systemic chemotherapy and surgery for colorectal cancer liver metastases. Radiomics features were extracted from baseline, pre-treatment, contrast-enhanced CT images. Multiple aggregation strategies were investigated for cases with multiple metastases. Radiomics signatures were derived using feature selection methods. Random survival forests (RSF) and neural network survival models (DeepSurv) based on radiomics features, alone or combined with CRS, were developed to predict TTR and DSS. Leveraging survival models predictions, classification models were trained to predict TTR within 18 months and DSS within 3 years. Classification performance was assessed with area under the receiver operating characteristic curve (AUC) on the test set. RESULTS For TTR prediction, the concordance index (95% confidence interval) was 0.57 (0.57-0.57) for CRS, 0.61 (0.60-0.61) for RSF in combination with CRS, and 0.70 (0.68-0.73) for DeepSurv in combination with CRS. For DSS prediction, the concordance index was 0.59 (0.59-0.59) for CRS, 0.57 (0.56-0.57) for RSF in combination with CRS, and 0.60 (0.58-0.61) for DeepSurv in combination with CRS. For TTR classification, the AUC was 0.33 (0.33-0.33) for CRS, 0.77 (0.75-0.78) for radiomics signature alone, and 0.58 (0.57-0.59) for DeepSurv score alone. For DSS classification, the AUC was 0.61 (0.61-0.61) for CRS, 0.57 (0.56-0.57) for radiomics signature, and 0.75 (0.74-0.76) for DeepSurv score alone. CONCLUSION Radiomics-based survival models outperformed CRS for TTR prediction. More accurate, noninvasive, and early prediction of patient outcome may help reduce exposure to ineffective yet toxic chemotherapy or high-risk major hepatectomies.
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Affiliation(s)
- Emmanuel Montagnon
- Centre de recherche du Centre hospitalier de l'Université de Montréal (CRCHUM), Montréal, QC, Canada
| | - Milena Cerny
- Centre de recherche du Centre hospitalier de l'Université de Montréal (CRCHUM), Montréal, QC, Canada
- Department of Radiology, CISSS des Laurentides, Hôpital de Saint-Eustache, Saint-Eustache, QC, Canada
| | - Vincent Hamilton
- Department of Radiology, Radiation Oncology and Nuclear Medicine, Université de Montréal, Montréal, QC, Canada
| | - Thomas Derennes
- Department of Radiology, Radiation Oncology and Nuclear Medicine, Université de Montréal, Montréal, QC, Canada
| | - André Ilinca
- Department of Radiology, Radiation Oncology and Nuclear Medicine, Université de Montréal, Montréal, QC, Canada
| | - Mohamed El Amine Elforaici
- Centre de recherche du Centre hospitalier de l'Université de Montréal (CRCHUM), Montréal, QC, Canada
- MedICAL Laboratory, Polytechnique Montréal, Montréal, QC, Canada
| | - Gilbert Jabbour
- Department of Radiology, Radiation Oncology and Nuclear Medicine, Université de Montréal, Montréal, QC, Canada
- Division of Internal Medicine, Department of Medicine, Hôpital du Sacré-Cœur-de-Montréal, Montréal, QC, Canada
| | - Edmond Rafie
- Department of Radiology, Radiation Oncology and Nuclear Medicine, Université de Montréal, Montréal, QC, Canada
| | - Anni Wu
- Department of Radiology, Radiation Oncology and Nuclear Medicine, Université de Montréal, Montréal, QC, Canada
| | | | | | - Samuel Kadoury
- Centre de recherche du Centre hospitalier de l'Université de Montréal (CRCHUM), Montréal, QC, Canada
- MedICAL Laboratory, Polytechnique Montréal, Montréal, QC, Canada
| | - Simon Turcotte
- Centre de recherche du Centre hospitalier de l'Université de Montréal (CRCHUM), Montréal, QC, Canada
- Hepatopancreatobiliary and Liver Transplantation Division, Department of Surgery, Centre Hospitalier de l'Université de Montréal (CHUM), Montréal, QC, Canada
| | - An Tang
- Centre de recherche du Centre hospitalier de l'Université de Montréal (CRCHUM), Montréal, QC, Canada
- Department of Radiology, Radiation Oncology and Nuclear Medicine, Université de Montréal, Montréal, QC, Canada
- Department of Radiology, Centre Hospitalier de l'Université de Montréal (CHUM), Montréal, QC, Canada
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Badesha AS, Frood R, Bailey MA, Coughlin PM, Scarsbrook AF. A Scoping Review of Machine-Learning Derived Radiomic Analysis of CT and PET Imaging to Investigate Atherosclerotic Cardiovascular Disease. Tomography 2024; 10:1455-1487. [PMID: 39330754 PMCID: PMC11435603 DOI: 10.3390/tomography10090108] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2024] [Revised: 08/27/2024] [Accepted: 08/30/2024] [Indexed: 09/28/2024] Open
Abstract
BACKGROUND Cardiovascular disease affects the carotid arteries, coronary arteries, aorta and the peripheral arteries. Radiomics involves the extraction of quantitative data from imaging features that are imperceptible to the eye. Radiomics analysis in cardiovascular disease has largely focused on CT and MRI modalities. This scoping review aims to summarise the existing literature on radiomic analysis techniques in cardiovascular disease. METHODS MEDLINE and Embase databases were searched for eligible studies evaluating radiomic techniques in living human subjects derived from CT, MRI or PET imaging investigating atherosclerotic disease. Data on study population, imaging characteristics and radiomics methodology were extracted. RESULTS Twenty-nine studies consisting of 5753 patients (3752 males) were identified, and 78.7% of patients were from coronary artery studies. Twenty-seven studies employed CT imaging (19 CT carotid angiography and 6 CT coronary angiography (CTCA)), and two studies studied PET/CT. Manual segmentation was most frequently undertaken. Processing techniques included voxel discretisation, voxel resampling and filtration. Various shape, first-order, second-order and higher-order radiomic features were extracted. Logistic regression was most commonly used for machine learning. CONCLUSION Most published evidence was feasibility/proof of concept work. There was significant heterogeneity in image acquisition, segmentation techniques, processing and analysis between studies. There is a need for the implementation of standardised imaging acquisition protocols, adherence to published reporting guidelines and economic evaluation.
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Affiliation(s)
- Arshpreet Singh Badesha
- Department of Radiology, St. James’s University Hospital, Leeds Teaching Hospitals NHS Trust, Leeds LS9 7TF, UK
| | - Russell Frood
- Department of Radiology, St. James’s University Hospital, Leeds Teaching Hospitals NHS Trust, Leeds LS9 7TF, UK
- Faculty of Medicine and Health, University of Leeds, Leeds LS2 9TJ, UK
| | - Marc A. Bailey
- Faculty of Medicine and Health, University of Leeds, Leeds LS2 9TJ, UK
- The Leeds Vascular Institute, Leeds General Infirmary, Leeds Teaching Hospitals NHS Trust, Leeds LS1 3EX, UK
| | - Patrick M. Coughlin
- The Leeds Vascular Institute, Leeds General Infirmary, Leeds Teaching Hospitals NHS Trust, Leeds LS1 3EX, UK
| | - Andrew F. Scarsbrook
- Department of Radiology, St. James’s University Hospital, Leeds Teaching Hospitals NHS Trust, Leeds LS9 7TF, UK
- Faculty of Medicine and Health, University of Leeds, Leeds LS2 9TJ, UK
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Ahmed TM, Lopez-Ramirez F, Fishman EK, Chu L. Artificial Intelligence Applications in Pancreatic Cancer Imaging. ADVANCES IN CLINICAL RADIOLOGY 2024; 6:41-54. [DOI: 10.1016/j.yacr.2024.04.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/05/2025]
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Leonhardi J, Sabanov A, Höhn A, Sucher R, Seehofer D, Mehdorn M, Schnarkowski B, Ebel S, Denecke T, Meyer H. CT Texture Analysis of Perihilar Cholangiocarcinoma-Associations With Tumor Grading, Tumor Markers and Clinical Outcome. Cancer Rep (Hoboken) 2024; 7:e2132. [PMID: 39307946 PMCID: PMC11417006 DOI: 10.1002/cnr2.2132] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2024] [Revised: 05/30/2024] [Accepted: 06/30/2024] [Indexed: 09/26/2024] Open
Abstract
BACKGROUND Texture analysis derived from computed tomography (CT) may provide clinically relevant imaging biomarkers associated with tumor histopathology. Perihilar cholangiocarcinoma is a malignant disease with an overall poor prognosis. AIMS The present study sought to elucidate possible associations between texture features derived from CT images with grading, tumor markers, and survival in extrahepatic, perihilar cholangiocarcinomas tumors. METHODS This retrospective study included 22 patients (10 females, 45%) with a mean age of 71.8 ± 8.7 years. Texture analysis was performed using the free available Mazda software. All tumors were histopathologically confirmed. Survival and clinical parameters were used as primary study outcomes. RESULTS In discrimination analysis, "S(1,1)SumVarnc" was statistically significantly different between patients with long-term survival and nonlong-term survival (mean 275.8 ± 32.6 vs. 239.7 ± 26.0, p = 0.01). The first-order parameter "skewness" was associated with the tumor marker "carcinoembryonic antigen" (CEA) (r = -0.7, p = 0.01). A statistically significant correlation of the texture parameter "S(5,0)SumVarnc" with tumor grading was identified (r = -0.6, p < 0.01). Several other texture features correlated with tumor markers CA-19-9 and AFP, as well as with T and N stage of tumors. CONCLUSION Several texture features derived from CT images were associated with tumor characteristics and survival in patients with perihilar cholangiocarcinomas. CT texture features could be used as valuable novel imaging markers in clinical routine.
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Affiliation(s)
- Jakob Leonhardi
- Department of Diagnostic and Interventional RadiologyUniversity of Leipzig Medical CenterLeipzigGermany
| | - Arsen Sabanov
- Department of SurgeryUniversity of Leipzig Medical CenterLeipzigGermany
| | - Anne Kathrin Höhn
- Department of PathologyUniversity of Leipzig Medical CenterLeipzigGermany
| | - Robert Sucher
- Department of SurgeryUniversity of Leipzig Medical CenterLeipzigGermany
- Department of Surgery, Division of General, Visceral and Transplant SurgeryMedical University of GrazGrazAustria
| | - Daniel Seehofer
- Department of SurgeryUniversity of Leipzig Medical CenterLeipzigGermany
| | - Matthias Mehdorn
- Department of SurgeryUniversity of Leipzig Medical CenterLeipzigGermany
| | - Benedikt Schnarkowski
- Department of Diagnostic and Interventional RadiologyUniversity of Leipzig Medical CenterLeipzigGermany
| | - Sebastian Ebel
- Department of Diagnostic and Interventional RadiologyUniversity of Leipzig Medical CenterLeipzigGermany
| | - Timm Denecke
- Department of Diagnostic and Interventional RadiologyUniversity of Leipzig Medical CenterLeipzigGermany
| | - Hans‐Jonas Meyer
- Department of Diagnostic and Interventional RadiologyUniversity of Leipzig Medical CenterLeipzigGermany
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Song X, Li L, Yu Q, Liu N, Zhu S, Yuan S. Radiogenomics models for predicting prognosis in locally advanced non-small cell lung cancer patients undergoing definitive chemoradiotherapy. Transl Lung Cancer Res 2024; 13:1828-1840. [PMID: 39263037 PMCID: PMC11384488 DOI: 10.21037/tlcr-24-145] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2024] [Accepted: 07/17/2024] [Indexed: 09/13/2024]
Abstract
Background Definitive chemoradiotherapy (dCRT) is the cornerstone for locally advanced non-small cell lung cancer (LA-NSCLC). The study aimed to construct a multi-omics model integrating baseline clinical data, computed tomography (CT) images and genetic information to predict the prognosis of dCRT in LA-NSCLC patients. Methods The study retrospectively enrolled 105 stage III LA-NSCLC patients who had undergone dCRT. The pre-treatment CT images were collected, and the primary tumor was delineated as a region of interest (ROI) on the image using 3D-Slicer, and the radiomics features were extracted. The least absolute shrinkage and selection operator (LASSO) was employed for dimensionality reduction and selection of features. Genomic information was obtained from the baseline tumor tissue samples. We then constructed a multi-omics model by combining baseline clinical data, radiomics and genomics features. The predictive performance of the model was evaluated by the area under the curve (AUC) of the receiver operating characteristic (ROC) and the concordance index (C-index). Results The median follow-up time was 30.1 months, and the median progression-free survival (PFS) was 10.60 months. Four features were applied to construct the radiomics model. Multivariable analysis demonstrated the Rad-score, KEAP1 and MET mutations were independent prognostic factors for PFS. The C-index of radiomics model, genomics model and radiogenomics model all performed well in the training group (0.590 vs. 0.606 vs. 0.663) and the validation group (0.599 vs. 0.594 vs. 0.650). Conclusions The radiomics model, genomics model and radiogenomics model can all predict the prognosis of dCRT for LA-NSCLC, and the radiogenomics model is superior to the single type model.
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Affiliation(s)
- Xiaoyu Song
- School of Clinical Medicine, Shandong Second Medical University, Weifang, China
- Department of Radiation Oncology, Shandong Cancer Hospital and Institute, Shandong First Medical University and Shandong Academy of Medical Sciences, Jinan, China
| | - Li Li
- Department of Radiation Oncology, Shandong Cancer Hospital and Institute, Shandong First Medical University and Shandong Academy of Medical Sciences, Jinan, China
- Department of Radiation Oncology, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China
- Department of Radiation Oncology, Anhui Provincial Cancer Hospital, Hefei, China
| | - Qingxi Yu
- Department of Radiation Oncology, Shandong Cancer Hospital and Institute, Shandong First Medical University and Shandong Academy of Medical Sciences, Jinan, China
| | - Ning Liu
- Department of Radiation Oncology, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China
- Department of Radiation Oncology, Anhui Provincial Cancer Hospital, Hefei, China
| | - Shouhui Zhu
- Department of Radiation Oncology, Shandong Cancer Hospital and Institute, Shandong First Medical University and Shandong Academy of Medical Sciences, Jinan, China
| | - Shuanghu Yuan
- Department of Radiation Oncology, Shandong Cancer Hospital and Institute, Shandong First Medical University and Shandong Academy of Medical Sciences, Jinan, China
- Department of Radiation Oncology, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China
- Department of Radiation Oncology, Anhui Provincial Cancer Hospital, Hefei, China
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Tremamunno G, Varga-Szemes A, Schoepf UJ, Laghi A, Zsarnoczay E, Fink N, Aquino GJ, O'Doherty J, Emrich T, Vecsey-Nagy M. Intraindividual reproducibility of myocardial radiomic features between energy-integrating detector and photon-counting detector CT angiography. Eur Radiol Exp 2024; 8:101. [PMID: 39196286 PMCID: PMC11358367 DOI: 10.1186/s41747-024-00493-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2024] [Accepted: 07/03/2024] [Indexed: 08/29/2024] Open
Abstract
BACKGROUND Radiomics is not yet used in clinical practice due to concerns regarding its susceptibility to technical factors. We aimed to assess the stability and interscan and interreader reproducibility of myocardial radiomic features between energy-integrating detector computed tomography (EID-CT) and photon-counting detector CT (PCD-CT) in patients undergoing coronary CT angiography (CCTA) on both systems. METHODS Consecutive patients undergoing clinically indicated CCTA on an EID-CT were prospectively enrolled for a PCD-CT CCTA within 30 days. Virtual monoenergetic images (VMI) at various keV levels and polychromatic images (T3D) were generated for PCD-CT, with image reconstruction parameters standardized between scans. Two readers performed myocardial segmentation and 110 radiomic features were compared intraindividually between EID-CT and PDC-CT series. The agreement of parameters was assessed using the intraclass correlation coefficient and paired t-test for the stability of the parameters. RESULTS Eighteen patients (15 males) aged 67.6 ± 9.7 years (mean ± standard deviation) were included. Besides polychromatic PCD-CT reconstructions, 60- and 70-keV VMIs showed the highest feature stability compared to EID-CT (96%, 90%, and 92%, respectively). The interscan reproducibility of features was moderate even in the most favorable comparisons (median ICC 0.50 [interquartile range 0.20-0.60] for T3D; 0.56 [0.33-0.74] for 60 keV; 0.50 [0.36-0.62] for 70 keV). Interreader reproducibility was excellent for the PCD-CT series and good for EID-CT segmentations. CONCLUSION Most myocardial radiomic features remain stable between EID-CT and PCD-CT. While features demonstrated moderate reproducibility between scanners, technological advances associated with PCD-CT may lead to greater reproducibility, potentially expediting future standardization efforts. RELEVANCE STATEMENT While the use of PCD-CT may facilitate reduced interreader variability in radiomics analysis, the observed interscanner variations in comparison to EID-CT should be taken into account in future research, with efforts being made to minimize their impact in future radiomics studies. KEY POINTS Most myocardial radiomic features resulted in being stable between EID-CT and PCD-CT on certain VMIs. The reproducibility of parameters between detector technologies was limited. PCD-CT improved interreader reproducibility of myocardial radiomic features.
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Affiliation(s)
- Giuseppe Tremamunno
- Department of Radiology and Radiological Science, Medical University of South Carolina, Charleston, SC, USA
- Department of Medical Surgical Sciences and Translational Medicine, Sapienza University of Rome, Rome, Italy
| | - Akos Varga-Szemes
- Department of Radiology and Radiological Science, Medical University of South Carolina, Charleston, SC, USA
| | - U Joseph Schoepf
- Department of Radiology and Radiological Science, Medical University of South Carolina, Charleston, SC, USA
| | - Andrea Laghi
- Department of Medical Surgical Sciences and Translational Medicine, Sapienza University of Rome, Rome, Italy
| | - Emese Zsarnoczay
- Department of Radiology and Radiological Science, Medical University of South Carolina, Charleston, SC, USA
- Medical Imaging Centre, Semmelweis University, Budapest, Hungary
| | - Nicola Fink
- Department of Radiology and Radiological Science, Medical University of South Carolina, Charleston, SC, USA
- Department of Radiology, University Hospital, LMU Munich, Munich, Germany
| | - Gilberto J Aquino
- Department of Radiology and Radiological Science, Medical University of South Carolina, Charleston, SC, USA
| | - Jim O'Doherty
- Department of Radiology and Radiological Science, Medical University of South Carolina, Charleston, SC, USA
- Siemens Medical Solutions, Malvern, PA, USA
| | - Tilman Emrich
- Department of Radiology and Radiological Science, Medical University of South Carolina, Charleston, SC, USA.
- Department of Diagnostic and Interventional Radiology, University Medical Center of the Johannes Gutenberg-University Mainz, Mainz, Germany.
| | - Milan Vecsey-Nagy
- Department of Radiology and Radiological Science, Medical University of South Carolina, Charleston, SC, USA
- Heart and Vascular Center, Semmelweis University, Budapest, Hungary
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Levi R, Mollura M, Savini G, Garoli F, Battaglia M, Ammirabile A, Cappellini LA, Superbi S, Grimaldi M, Barbieri R, Politi LS. A reference framework for standardization and harmonization of CT radiomics features on cadaveric sample. Sci Rep 2024; 14:19259. [PMID: 39164314 PMCID: PMC11336160 DOI: 10.1038/s41598-024-68158-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2024] [Accepted: 07/22/2024] [Indexed: 08/22/2024] Open
Abstract
Radiomics features (RFs) serve as quantitative metrics to characterize shape, density/intensity, and texture patterns in radiological images. Despite their promise, RFs exhibit reproducibility challenges across acquisition settings, thus limiting implementation into clinical practice. In this investigation, we evaluate the effects of different CT scanners and CT acquisition protocols (KV, mA, field-of-view, and reconstruction kernel settings) on RFs extracted from lumbar vertebrae of a cadaveric trunk. Employing univariate and multivariate Generalized Linear Models (GLM), we evaluated the impact of each acquisition parameter on RFs. Our findings indicate that variations in mA had negligible effects on RFs, while alterations in kV resulted in exponential changes in several RFs, notably First Order (94.4%), GLCM (87.5%), and NGTDM (100%). Moreover, we demonstrated that a tailored GLM model was superior to the ComBat algorithm in harmonizing CT images. GLM achieved R2 > 0.90 in 21 RFs (19.6%), contrasting ComBat's mean R2 above 0.90 in only 1 RF (0.9%). This pioneering study unveils the effects of CT acquisition parameters on bone RFs in cadaveric specimens, highlighting significant variations across parameters and scanner datasets. The proposed GLM model presents a robust solution for mitigating these differences, potentially advancing harmonization efforts in Radiomics-based studies across diverse CT protocols and vendors.
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Affiliation(s)
- Riccardo Levi
- Department of Biomedical Sciences, Humanitas University, Via Rita Levi Montalcini, Pieve Emanuele, 20072, Milan, Italy
- Neuroradiology Department, IRCCS Humanitas Research Hospital, Via Manzoni 56, Rozzano, 20089, Milan, Italy
| | - Maximiliano Mollura
- Department of Electronic, Information and Bioengineering, Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133, Milan, Italy
| | - Giovanni Savini
- Neuroradiology Department, IRCCS Humanitas Research Hospital, Via Manzoni 56, Rozzano, 20089, Milan, Italy
| | - Federico Garoli
- Department of Biomedical Sciences, Humanitas University, Via Rita Levi Montalcini, Pieve Emanuele, 20072, Milan, Italy
| | - Massimiliano Battaglia
- Department of Biomedical Sciences, Humanitas University, Via Rita Levi Montalcini, Pieve Emanuele, 20072, Milan, Italy
| | - Angela Ammirabile
- Department of Biomedical Sciences, Humanitas University, Via Rita Levi Montalcini, Pieve Emanuele, 20072, Milan, Italy
| | - Luca A Cappellini
- Department of Biomedical Sciences, Humanitas University, Via Rita Levi Montalcini, Pieve Emanuele, 20072, Milan, Italy
| | - Simona Superbi
- Neuroradiology Department, IRCCS Humanitas Research Hospital, Via Manzoni 56, Rozzano, 20089, Milan, Italy
| | - Marco Grimaldi
- Neuroradiology Department, IRCCS Humanitas Research Hospital, Via Manzoni 56, Rozzano, 20089, Milan, Italy
| | - Riccardo Barbieri
- Department of Electronic, Information and Bioengineering, Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133, Milan, Italy
| | - Letterio S Politi
- Department of Biomedical Sciences, Humanitas University, Via Rita Levi Montalcini, Pieve Emanuele, 20072, Milan, Italy.
- Neuroradiology Department, IRCCS Humanitas Research Hospital, Via Manzoni 56, Rozzano, 20089, Milan, Italy.
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Li Y, Liu X, Gu M, Xu T, Ge C, Chang P. Significance of MRI-based radiomics in predicting pathological complete response to neoadjuvant chemoradiotherapy of locally advanced rectal cancer: A narrative review. Cancer Radiother 2024; 28:390-401. [PMID: 39174361 DOI: 10.1016/j.canrad.2024.04.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2024] [Revised: 04/24/2024] [Accepted: 04/25/2024] [Indexed: 08/24/2024]
Abstract
Neoadjuvant chemoradiotherapy is the standard treatment for patients with locally advanced rectal cancers owing to its ability to downstage primary tumours. Some patients can achieve pathological complete response after neoadjuvant therapy, and can adopt a "watch and wait" treatment strategy to avoid overtreatment. Therefore, it is essential to develop strategies for predicting responses to neoadjuvant therapy. Radiomics has shown great potential in extracting tumour features from high-throughput medical images for the construction of mathematics models for predicting the effects of anticancerous therapies. Herein, we explored MRI-based radiomics and found that it can predict responses of locally advanced rectal cancers to chemoradiation. Efficient radiomics model allow early-stage prediction of the effect of neoadjuvant chemoradiotherapy on locally advanced rectal cancers. It helps clinicians to make informed therapeutic decisions. In this review, we discuss the workflow of radiomics, and summarize the clinical application of MRI-based radiomics in predicting pathological complete response to neoadjuvant chemoradiotherapy of locally advanced rectal cancer.
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Affiliation(s)
- Y Li
- Department of Radiation Oncology and Therapy, The First Hospital of Jilin University, Changchun, China
| | - X Liu
- Department of Radiation Oncology and Therapy, The First Hospital of Jilin University, Changchun, China
| | - M Gu
- Department of Radiation Oncology and Therapy, The First Hospital of Jilin University, Changchun, China
| | - T Xu
- Department of Radiation Oncology and Therapy, The First Hospital of Jilin University, Changchun, China
| | - C Ge
- Department of Radiation Oncology and Therapy, The First Hospital of Jilin University, Changchun, China
| | - P Chang
- Department of Radiation Oncology and Therapy, The First Hospital of Jilin University, Changchun, China.
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Weeda YA, Kalisvaart GM, Hartgrink HH, van der Molen AJ, Gelderblom H, Bovée JV, de Geus-Oei LF, Grootjans W, van der Hage JA. Monitoring neoadjuvant treatment-induced surgical benefit in GIST patients using CT-based radiological criteria. Surg Open Sci 2024; 20:169-177. [PMID: 39886063 PMCID: PMC11780385 DOI: 10.1016/j.sopen.2024.07.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2024] [Revised: 07/03/2024] [Accepted: 07/07/2024] [Indexed: 01/05/2025] Open
Abstract
Objective This single-centre retrospective study aims to determine the incidence of therapy-induced surgical benefit in patients with non-metastatic gastrointestinal stromal tumour (GIST) treated with neoadjuvant tyrosine kinase inhibitors (TKI) and evaluate whether this can be predicted by radiological response criteria. Methods Thirty-nine non-metastatic GIST patients were treated with neoadjuvant TKI treatment, followed by curative-intended surgery, and monitored using contrast-enhanced computed tomography (CE-CT). Surgical benefit was independently assessed by two surgical oncologists and was defined by de-escalation of surgical strategy or reduced surgical complexity. Radiological response between baseline and the last preoperative scan was determined through RECIST 1.1, Choi and volumetric criteria. Results In this patient cohort, median neoadjuvant treatment interval was 8.3 (IQR, 3.9-10.6) months. Surgical benefit was gained in 22/39 patients. When comparing radiological criteria to findings on surgical benefit, accuracy, sensitivity, and specificity for RECIST 1.1 (90 %, 100.0 % and 82 %), Choi (64 %, 24 %, and 96 %) and volumetry (95 %, 100.0 %, and 91 %) were calculated. In 30/39 patients, temporal changes in tumour size over the course of treatment was assessed. Tumour volume reduced significantly in the surgical-benefit group compared to the non-benefit group (72 % vs. 25 %, p < 0.01) within three months. 14/19 surgical-benefit patients had an initial volume reduction above 66 %, after which volume reduced slightly with a median 3.1 % (IQR, 2.1-7.8 %) reduction. Conclusion Surgical benefit after neoadjuvant treatment was achieved in 56 % of patients and was most accurately reflected by size-based response criteria. In patients with therapy-induced surgical benefit, nearly all treatment-induced volume reductions were achieved within three months.
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Affiliation(s)
- Ylva A. Weeda
- Department of Radiology, Leiden University Medical Center, 2333 ZA Leiden, the Netherlands
| | - Gijsbert M. Kalisvaart
- Department of Radiology, Leiden University Medical Center, 2333 ZA Leiden, the Netherlands
| | - Henk H. Hartgrink
- Department of Surgical Oncology, Leiden University Medical Center, 2333 ZA Leiden, the Netherlands
| | - Aart J. van der Molen
- Department of Radiology, Leiden University Medical Center, 2333 ZA Leiden, the Netherlands
| | - Hans Gelderblom
- Department of Medical Oncology, Leiden University Medical Center, 2333 ZA Leiden, the Netherlands
| | - Judith V.M.G. Bovée
- Department of Pathology, Leiden University Medical Center, 2333 ZA Leiden, the Netherlands
| | - Lioe-Fee de Geus-Oei
- Department of Radiology, Leiden University Medical Center, 2333 ZA Leiden, the Netherlands
- Biomedical Photonic Imaging Group, University of Twente, 7522 NB Enschede, the Netherlands
- Department of Radiation Science & Technology, Delft University of Technology, 2629 JB Delft, the Netherlands
| | - Willem Grootjans
- Department of Radiology, Leiden University Medical Center, 2333 ZA Leiden, the Netherlands
| | - Jos A. van der Hage
- Department of Surgical Oncology, Leiden University Medical Center, 2333 ZA Leiden, the Netherlands
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Viswanathan VS, Parmar V, Madabhushi A. Towards equitable AI in oncology. Nat Rev Clin Oncol 2024; 21:628-637. [PMID: 38849530 DOI: 10.1038/s41571-024-00909-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/21/2024] [Indexed: 06/09/2024]
Abstract
Artificial intelligence (AI) stands at the threshold of revolutionizing clinical oncology, with considerable potential to improve early cancer detection and risk assessment, and to enable more accurate personalized treatment recommendations. However, a notable imbalance exists in the distribution of the benefits of AI, which disproportionately favour those living in specific geographical locations and in specific populations. In this Perspective, we discuss the need to foster the development of equitable AI tools that are both accurate in and accessible to a diverse range of patient populations, including those in low-income to middle-income countries. We also discuss some of the challenges and potential solutions in attaining equitable AI, including addressing the historically limited representation of diverse populations in existing clinical datasets and the use of inadequate clinical validation methods. Additionally, we focus on extant sources of inequity including the type of model approach (such as deep learning, and feature engineering-based methods), the implications of dataset curation strategies, the need for rigorous validation across a variety of populations and settings, and the risk of introducing contextual bias that comes with developing tools predominantly in high-income countries.
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Affiliation(s)
| | - Vani Parmar
- Department of Breast Surgical Oncology, Punyashlok Ahilyadevi Holkar Head & Neck Cancer Institute of India, Mumbai, India
| | - Anant Madabhushi
- Department of Biomedical Engineering, Emory University and Georgia Institute of Technology, Atlanta, GA, USA.
- Atlanta Veterans Administration Medical Center, Atlanta, GA, USA.
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Owen K, Joe W, Ivander A, Palgunadi IN, Adhyatma KP. Role of Noncontrast Computed Tomography Parameters in Predicting the Outcome of Extracorporeal Shock Wave Lithotripsy for Upper Urinary Stones Cases: A Meta-analysis. Acad Radiol 2024; 31:3282-3296. [PMID: 37985292 DOI: 10.1016/j.acra.2023.10.021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2023] [Revised: 10/09/2023] [Accepted: 10/10/2023] [Indexed: 11/22/2023]
Abstract
RATIONALE Extracorporeal shock wave lithotripsy (ESWL) is widely considered the primary approach for managing urinary tract stones. This study aimed to assess the predictive factors associated with non-contrast computed tomography (NCCT)-based parameters of upper urinary stones in relation to the outcomes of ESWL. MATERIALS AND METHODS A systematic search was conducted in PubMed, ScienceDirect, Web of Science, and Cochrane Library to identify all relevant studies published up to June 3, 2023. Several NCCT-based parameters to predict ESWL outcomes, comprised of mean stone density (MSD), skin-to-stone distance (SSD), and stone size, were extracted and analyzed using Review Manager software. RESULTS Out of 979 publications screened, a total of 39 publications, involving 7869 patients, were enrolled in the analysis. The pooled estimate demonstrated significant differences between MSD, and stone size between successful and failure of stone fragmentation groups, in which lower values of these parameters are associated with successful ESWL outcomes. CONCLUSION The results from the current study suggested that lower NCCT parameters, notably MSD, SSD, and stone size, are significantly associated with successful ESWL outcome. However, additional large-scale prospective studies are required to utilize these parameters effectively, and the optimal cutoff value should be determined.
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Affiliation(s)
- Kevin Owen
- Bangli General Hospital, Bangli, Indonesia (K.O.).
| | - Wilbert Joe
- Regional Public Hospital dr.M. Thomsen Nias, Gunungsitoli, Indonesia (W.J.)
| | - Alvin Ivander
- Faculty of Medicine, Universitas Sumatera Utara, Medan, Indonesia (A.I.)
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Kumar K, Yeo AU, McIntosh L, Kron T, Wheeler G, Franich RD. Deep Learning Auto-Segmentation Network for Pediatric Computed Tomography Data Sets: Can We Extrapolate From Adults? Int J Radiat Oncol Biol Phys 2024; 119:1297-1306. [PMID: 38246249 DOI: 10.1016/j.ijrobp.2024.01.201] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2023] [Revised: 12/10/2023] [Accepted: 01/07/2024] [Indexed: 01/23/2024]
Abstract
PURPOSE Artificial intelligence (AI)-based auto-segmentation models hold promise for enhanced efficiency and consistency in organ contouring for adaptive radiation therapy and radiation therapy planning. However, their performance on pediatric computed tomography (CT) data and cross-scanner compatibility remain unclear. This study aimed to evaluate the performance of AI-based auto-segmentation models trained on adult CT data when applied to pediatric data sets and explore the improvement in performance gained by including pediatric training data. It also examined their ability to accurately segment CT data acquired from different scanners. METHODS AND MATERIALS Using the nnU-Net framework, segmentation models were trained on data sets of adult, pediatric, and combined CT scans for 7 pelvic/thoracic organs. Each model was trained on 290 to 300 cases per category and organ. Training data sets included a combination of clinical data and several open repositories. The study incorporated a database of 459 pediatric (0-16 years) CT scans and 950 adults (>18 years), ensuring all scans had human expert ground-truth contours of the selected organs. Performance was evaluated based on Dice similarity coefficients (DSC) of the model-generated contours. RESULTS AI models trained exclusively on adult data underperformed on pediatric data, especially for the 0 to 2 age group: mean DSC was below 0.5 for the bladder and spleen. The addition of pediatric training data demonstrated significant improvement for all age groups, achieving a mean DSC of above 0.85 for all organs in every age group. Larger organs like the liver and kidneys maintained consistent performance for all models across age groups. No significant difference emerged in the cross-scanner performance evaluation, suggesting robust cross-scanner generalization. CONCLUSIONS For optimal segmentation across age groups, it is important to include pediatric data in the training of segmentation models. The successful cross-scanner generalization also supports the real-world clinical applicability of these AI models. This study emphasizes the significance of data set diversity in training robust AI systems for medical image interpretation tasks.
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Affiliation(s)
- Kartik Kumar
- Physical Sciences Department, Peter MacCallum Cancer Centre, Victoria, Australia; School of Science, RMIT University, Melbourne, Victoria, Australia
| | - Adam U Yeo
- Physical Sciences Department, Peter MacCallum Cancer Centre, Victoria, Australia; School of Science, RMIT University, Melbourne, Victoria, Australia; Sir Peter MacCallum Department of Oncology, University of Melbourne, Melbourne, Victoria, Australia
| | - Lachlan McIntosh
- Physical Sciences Department, Peter MacCallum Cancer Centre, Victoria, Australia; School of Science, RMIT University, Melbourne, Victoria, Australia
| | - Tomas Kron
- Physical Sciences Department, Peter MacCallum Cancer Centre, Victoria, Australia; School of Science, RMIT University, Melbourne, Victoria, Australia; Sir Peter MacCallum Department of Oncology, University of Melbourne, Melbourne, Victoria, Australia; Centre for Medical Radiation Physics, University of Wollongong, Wollongong, New South Wales, Australia
| | - Greg Wheeler
- Physical Sciences Department, Peter MacCallum Cancer Centre, Victoria, Australia; Sir Peter MacCallum Department of Oncology, University of Melbourne, Melbourne, Victoria, Australia
| | - Rick D Franich
- Physical Sciences Department, Peter MacCallum Cancer Centre, Victoria, Australia; School of Science, RMIT University, Melbourne, Victoria, Australia.
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Brown KH, Kerr BN, Pettigrew M, Connor K, Miller IS, Shiels L, Connolly C, McGarry C, Byrne AT, Butterworth KT. A comparative analysis of preclinical computed tomography radiomics using cone-beam and micro-computed tomography scanners. Phys Imaging Radiat Oncol 2024; 31:100615. [PMID: 39157293 PMCID: PMC11328005 DOI: 10.1016/j.phro.2024.100615] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2024] [Revised: 07/17/2024] [Accepted: 07/20/2024] [Indexed: 08/20/2024] Open
Abstract
Background and purpose Radiomics analysis extracts quantitative data (features) from medical images. These features could potentially reflect biological characteristics and act as imaging biomarkers within precision medicine. However, there is a lack of cross-comparison and validation of radiomics outputs which is paramount for clinical implementation. In this study, we compared radiomics outputs across two computed tomography (CT)-based preclinical scanners. Materials and methods Cone beam CT (CBCT) and µCT scans were acquired using different preclinical CT imaging platforms. The reproducibility of radiomics features on each scanner was assessed using a phantom across imaging energies (40 & 60 kVp) and segmentation volumes (44-238 mm3). Retrospective mouse scans were used to compare feature reliability across varying tissue densities (lung, heart, bone), scanners and after voxel size harmonisation. Reliable features had an intraclass correlation coefficient (ICC) > 0.8. Results First order and GLCM features were the most reliable on both scanners across different volumes. There was an inverse relationship between tissue density and feature reliability, with the highest number of features in lung (CBCT=580, µCT=734) and lowest in bone (CBCT=110, µCT=560). Comparable features for lung and heart tissues increased when voxel sizes were harmonised. We have identified tissue-specific preclinical radiomics signatures in mice for the lung (133), heart (35), and bone (15). Conclusions Preclinical CBCT and µCT scans can be used for radiomics analysis to support the development of meaningful radiomics signatures. This study demonstrates the importance of standardisation and emphasises the need for multi-centre studies.
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Affiliation(s)
- Kathryn H Brown
- Patrick G. Johnston Centre for Cancer Research, Queen's University Belfast, Belfast, United Kingdom
| | - Brianna N Kerr
- Patrick G. Johnston Centre for Cancer Research, Queen's University Belfast, Belfast, United Kingdom
| | - Mihaela Pettigrew
- Patrick G. Johnston Centre for Cancer Research, Queen's University Belfast, Belfast, United Kingdom
| | - Kate Connor
- Department of Physiology and Medical Physics and Centre for Systems Medicine, Royal College of Surgeons in Ireland, Dublin 2, Ireland
| | - Ian S Miller
- Department of Physiology and Medical Physics and Centre for Systems Medicine, Royal College of Surgeons in Ireland, Dublin 2, Ireland
- National Preclinical Imaging Centre, Royal College of Surgeons in Ireland, Dublin 2, Ireland
| | - Liam Shiels
- Department of Physiology and Medical Physics and Centre for Systems Medicine, Royal College of Surgeons in Ireland, Dublin 2, Ireland
| | - Colum Connolly
- Department of Physiology and Medical Physics and Centre for Systems Medicine, Royal College of Surgeons in Ireland, Dublin 2, Ireland
| | - Conor McGarry
- Patrick G. Johnston Centre for Cancer Research, Queen's University Belfast, Belfast, United Kingdom
- Northern Ireland Cancer Centre, Belfast Health & Social Care Trust, Belfast, United Kingdom
| | - Annette T Byrne
- Department of Physiology and Medical Physics and Centre for Systems Medicine, Royal College of Surgeons in Ireland, Dublin 2, Ireland
- National Preclinical Imaging Centre, Royal College of Surgeons in Ireland, Dublin 2, Ireland
| | - Karl T Butterworth
- Patrick G. Johnston Centre for Cancer Research, Queen's University Belfast, Belfast, United Kingdom
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Yang KF, Li SJ, Xu J, Zheng YB. Machine learning prediction model for gray-level co-occurrence matrix features of synchronous liver metastasis in colorectal cancer. World J Gastrointest Surg 2024; 16:1571-1581. [PMID: 38983351 PMCID: PMC11229995 DOI: 10.4240/wjgs.v16.i6.1571] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/27/2024] [Revised: 03/16/2024] [Accepted: 04/25/2024] [Indexed: 06/27/2024] Open
Abstract
BACKGROUND Synchronous liver metastasis (SLM) is a significant contributor to morbidity in colorectal cancer (CRC). There are no effective predictive device integration algorithms to predict adverse SLM events during the diagnosis of CRC. AIM To explore the risk factors for SLM in CRC and construct a visual prediction model based on gray-level co-occurrence matrix (GLCM) features collected from magnetic resonance imaging (MRI). METHODS Our study retrospectively enrolled 392 patients with CRC from Yichang Central People's Hospital from January 2015 to May 2023. Patients were randomly divided into a training and validation group (3:7). The clinical parameters and GLCM features extracted from MRI were included as candidate variables. The prediction model was constructed using a generalized linear regression model, random forest model (RFM), and artificial neural network model. Receiver operating characteristic curves and decision curves were used to evaluate the prediction model. RESULTS Among the 392 patients, 48 had SLM (12.24%). We obtained fourteen GLCM imaging data for variable screening of SLM prediction models. Inverse difference, mean sum, sum entropy, sum variance, sum of squares, energy, and difference variance were listed as candidate variables, and the prediction efficiency (area under the curve) of the subsequent RFM in the training set and internal validation set was 0.917 [95% confidence interval (95%CI): 0.866-0.968] and 0.09 (95%CI: 0.858-0.960), respectively. CONCLUSION A predictive model combining GLCM image features with machine learning can predict SLM in CRC. This model can assist clinicians in making timely and personalized clinical decisions.
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Affiliation(s)
- Kai-Feng Yang
- Department of Gastrointestinal Surgery, Renmin Hospital of Wuhan University, Wuhan 430030, Hubei Province, China
| | - Sheng-Jie Li
- Department of Gastrointestinal Surgery, The First College of Clinical Medical Science, China Three Gorges University, Yichang Central People’s Hospital, Yichang 443008, Hubei Province, China
| | - Jun Xu
- Department of Gastrointestinal Surgery, The First College of Clinical Medical Science, China Three Gorges University, Yichang Central People’s Hospital, Yichang 443008, Hubei Province, China
| | - Yong-Bin Zheng
- Department of Gastrointestinal Surgery, Renmin Hospital of Wuhan University, Wuhan 430030, Hubei Province, China
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Grossen AA, Evans AR, Ernst GL, Behnen CC, Zhao X, Bauer AM. The current landscape of machine learning-based radiomics in arteriovenous malformations: a systematic review and radiomics quality score assessment. Front Neurol 2024; 15:1398876. [PMID: 38915798 PMCID: PMC11194423 DOI: 10.3389/fneur.2024.1398876] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2024] [Accepted: 05/21/2024] [Indexed: 06/26/2024] Open
Abstract
Background Arteriovenous malformations (AVMs) are rare vascular anomalies involving a disorganization of arteries and veins with no intervening capillaries. In the past 10 years, radiomics and machine learning (ML) models became increasingly popular for analyzing diagnostic medical images. The goal of this review was to provide a comprehensive summary of current radiomic models being employed for the diagnostic, therapeutic, prognostic, and predictive outcomes in AVM management. Methods A systematic literature review was conducted according to the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) 2020 guidelines, in which the PubMed and Embase databases were searched using the following terms: (cerebral OR brain OR intracranial OR central nervous system OR spine OR spinal) AND (AVM OR arteriovenous malformation OR arteriovenous malformations) AND (radiomics OR radiogenomics OR machine learning OR artificial intelligence OR deep learning OR computer-aided detection OR computer-aided prediction OR computer-aided treatment decision). A radiomics quality score (RQS) was calculated for all included studies. Results Thirteen studies were included, which were all retrospective in nature. Three studies (23%) dealt with AVM diagnosis and grading, 1 study (8%) gauged treatment response, 8 (62%) predicted outcomes, and the last one (8%) addressed prognosis. No radiomics model had undergone external validation. The mean RQS was 15.92 (range: 10-18). Conclusion We demonstrated that radiomics is currently being studied in different facets of AVM management. While not ready for clinical use, radiomics is a rapidly emerging field expected to play a significant future role in medical imaging. More prospective studies are warranted to determine the role of radiomics in the diagnosis, prediction of comorbidities, and treatment selection in AVM management.
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Affiliation(s)
- Audrey A. Grossen
- Department of Neurosurgery, University of Oklahoma Health Sciences Center, Oklahoma City, OK, United States
| | - Alexander R. Evans
- Department of Neurosurgery, University of Oklahoma Health Sciences Center, Oklahoma City, OK, United States
| | - Griffin L. Ernst
- Department of Neurosurgery, University of Oklahoma Health Sciences Center, Oklahoma City, OK, United States
| | - Connor C. Behnen
- Data Science and Analytics, University of Oklahoma, Norman, OK, United States
| | - Xiaochun Zhao
- Department of Neurosurgery, University of Oklahoma Health Sciences Center, Oklahoma City, OK, United States
| | - Andrew M. Bauer
- Department of Neurosurgery, University of Oklahoma Health Sciences Center, Oklahoma City, OK, United States
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Zhang X, Iqbal Bin Saripan M, Wu Y, Wang Z, Wen D, Cao Z, Wang B, Xu S, Liu Y, Marhaban MH, Dong X. The impact of the combat method on radiomics feature compensation and analysis of scanners from different manufacturers. BMC Med Imaging 2024; 24:137. [PMID: 38844854 PMCID: PMC11157873 DOI: 10.1186/s12880-024-01306-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2023] [Accepted: 05/23/2024] [Indexed: 06/09/2024] Open
Abstract
BACKGROUND This study investigated whether the Combat compensation method can remove the variability of radiomic features extracted from different scanners, while also examining its impact on the subsequent predictive performance of machine learning models. MATERIALS AND METHODS 135 CT images of Credence Cartridge Radiomic phantoms were collected and screened from three scanners manufactured by Siemens, Philips, and GE. 100 radiomic features were extracted and 20 radiomic features were screened according to the Lasso regression method. The radiomic features extracted from the rubber and resin-filled regions in the cartridges were labeled into different categories for evaluating the performance of the machine learning model. Radiomics features were divided into three groups based on the different scanner manufacturers. The radiomic features were randomly divided into training and test sets with a ratio of 8:2. Five machine learning models (lasso, logistic regression, random forest, support vector machine, neural network) were employed to evaluate the impact of Combat on radiomic features. The variability among radiomic features were assessed using analysis of variance (ANOVA) and principal component analysis (PCA). Accuracy, precision, recall, and area under the receiver curve (AUC) were used as evaluation metrics for model classification. RESULTS The principal component and ANOVA analysis results show that the variability of different scanner manufacturers in radiomic features was removed (P˃0.05). After harmonization with the Combat algorithm, the distributions of radiomic features were aligned in terms of location and scale. The performance of machine learning models for classification improved, with the Random Forest model showing the most significant enhancement. The AUC value increased from 0.88 to 0.92. CONCLUSIONS The Combat algorithm has reduced variability in radiomic features from different scanners. In the phantom CT dataset, it appears that the machine learning model's classification performance may have improved after Combat harmonization. However, further investigation and validation are required to fully comprehend Combat's impact on radiomic features in medical imaging.
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Affiliation(s)
- Xiaolei Zhang
- Faculty of Engineering, Universiti Putra Malaysia, Serdang, Malaysia.
- Hebei International Research Center of Medical Engineering, Chengde Medical University, Chengde City, Hebei Province, China.
- Department of Biomedical Engineering, Chengde Medical University, Chengde City, Hebei Province, China.
| | | | - Yanjun Wu
- Hebei International Research Center of Medical Engineering, Chengde Medical University, Chengde City, Hebei Province, China
| | - Zhongxiao Wang
- Hebei International Research Center of Medical Engineering, Chengde Medical University, Chengde City, Hebei Province, China
| | - Dong Wen
- Institute of Artificial Intelligence, University of Science and Technology Beijing, Beijing, China
| | - Zhendong Cao
- Department of Radiology, the Affiliated Hospital of Chengde Medical University, Chengde, Hebei, China
| | - Bingzhen Wang
- Faculty of Engineering, Universiti Putra Malaysia, Serdang, Malaysia
- Hebei International Research Center of Medical Engineering, Chengde Medical University, Chengde City, Hebei Province, China
| | - Shiqi Xu
- Hebei International Research Center of Medical Engineering, Chengde Medical University, Chengde City, Hebei Province, China
| | - Yanli Liu
- Hebei International Research Center of Medical Engineering, Chengde Medical University, Chengde City, Hebei Province, China
| | | | - Xianling Dong
- Hebei International Research Center of Medical Engineering, Chengde Medical University, Chengde City, Hebei Province, China.
- Hebei Provincial Key Laboratory of Nerve Injury and Repair, Chengde Medical University, Chengde City, Hebei Province, China.
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Vellala A, Mogler C, Haag F, Tollens F, Rudolf H, Pietsch F, Wängler C, Wängler B, Schoenberg SO, Froelich MF, Hertel A. Comparing quantitative image parameters between animal and clinical CT-scanners: a translational phantom study analysis. Front Med (Lausanne) 2024; 11:1407235. [PMID: 38903806 PMCID: PMC11188677 DOI: 10.3389/fmed.2024.1407235] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2024] [Accepted: 05/27/2024] [Indexed: 06/22/2024] Open
Abstract
Purpose This study compares phantom-based variability of extracted radiomics features from scans on a photon counting CT (PCCT) and an experimental animal PET/CT-scanner (Albira II) to investigate the potential of radiomics for translation from animal models to human scans. While oncological basic research in animal PET/CT has allowed an intrinsic comparison between PET and CT, but no 1:1 translation to a human CT scanner due to resolution and noise limitations, Radiomics as a statistical and thus scale-independent method can potentially close the critical gap. Methods Two phantoms were scanned on a PCCT and animal PET/CT-scanner with different scan parameters and then the radiomics parameters were extracted. A Principal Component Analysis (PCA) was conducted. To overcome the limitation of a small dataset, a data augmentation technique was applied. A Ridge Classifier was trained and a Feature Importance- and Cluster analysis was performed. Results PCA and Cluster Analysis shows a clear differentiation between phantom types while emphasizing the comparability of both scanners. The Ridge Classifier exhibited a strong training performance with 93% accuracy, but faced challenges in generalization with a test accuracy of 62%. Conclusion These results show that radiomics has great potential as a translational tool between animal models and human routine diagnostics, especially using the novel photon counting technique. This is another crucial step towards integration of radiomics analysis into clinical practice.
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Affiliation(s)
- Abhinay Vellala
- Department of Radiology and Nuclear medicine, University Medical Centre Mannheim, University of Heidelberg, Mannheim, Germany
| | - Carolin Mogler
- Department of Pathology, Technical University of Munich, Munich, Germany
| | - Florian Haag
- Department of Radiology and Nuclear medicine, University Medical Centre Mannheim, University of Heidelberg, Mannheim, Germany
| | - Fabian Tollens
- Department of Radiology and Nuclear medicine, University Medical Centre Mannheim, University of Heidelberg, Mannheim, Germany
| | - Henning Rudolf
- Department of Radiology and Nuclear medicine, University Medical Centre Mannheim, University of Heidelberg, Mannheim, Germany
| | - Friedrich Pietsch
- Department of Radiology and Nuclear medicine, University Medical Centre Mannheim, University of Heidelberg, Mannheim, Germany
| | - Carmen Wängler
- Department of Radiology and Nuclear medicine, University Medical Centre Mannheim, University of Heidelberg, Mannheim, Germany
| | - Björn Wängler
- Department of Radiology and Nuclear medicine, University Medical Centre Mannheim, University of Heidelberg, Mannheim, Germany
| | - Stefan O. Schoenberg
- Department of Radiology and Nuclear medicine, University Medical Centre Mannheim, University of Heidelberg, Mannheim, Germany
| | - Matthias F. Froelich
- Department of Radiology and Nuclear medicine, University Medical Centre Mannheim, University of Heidelberg, Mannheim, Germany
| | - Alexander Hertel
- Department of Radiology and Nuclear medicine, University Medical Centre Mannheim, University of Heidelberg, Mannheim, Germany
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Chen Y, He D, Wu Y, Li X, Yang K, Zhan Y, Chen J, Zhou X. A new computed tomography score-based staging for melioidosis pneumonia to predict progression. Quant Imaging Med Surg 2024; 14:3863-3874. [PMID: 38846316 PMCID: PMC11151251 DOI: 10.21037/qims-23-1476] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2023] [Accepted: 03/29/2024] [Indexed: 06/09/2024]
Abstract
Background Melioidosis pneumonia, caused by the bacterium Burkholderia pseudomallei, is a serious infectious disease prevalent in tropical regions. Chest computed tomography (CT) has emerged as a valuable tool for assessing the severity and progression of lung involvement in melioidosis pneumonia. However, there persists a need for the quantitative assessment of CT characteristics and staging methodologies to precisely anticipate disease progression. This study aimed to quantitatively extract CT features and evaluate a CT score-based staging system in predicting the progression of melioidosis pneumonia. Methods This study included 97 patients with culture-confirmed melioidosis pneumonia who presented between January 2002 and December 2021. Lung segmentation and annotation of lesions (consolidation, nodules, and cavity) were used for feature extraction. The features, including the involved area, amount, and intensity, were extracted. The CT scores of the lesion features were defined by the feature importance weight and qualitative stage of melioidosis pneumonia. Gaussian process regression (GPR) was used to predict patients with severe or critical melioidosis pneumonia according to CT scores. Results The melioidosis pneumonia stages included acute stage (0-7 days), subacute stage (8-28 days), and chronic stage (>28 days). In the acute stage, the CT scores of all patients ranged from 2.5 to 6.5. In the subacute stage, the CT scores for the severe and mild patients were 3.0-7.0 and 2.0-5.0, respectively. In the chronic stage, the CT score of the mild patients fluctuated approximately between 2.5 and 3.5 in a linear distribution. Consolidation was the most common type of lung lesion in those with melioidosis pneumonia. Between stages I and II, the percentage of severe scans with nodules dropped from 72.22% to 47.62% (P<0.05), and the percentage of severe scans with cavities significantly increased from 16.67% to 57.14% (P<0.05). The GPR optimization function yielded area under the receiver operating characteristic curves of 0.71 for stage I, 0.92 for stage II, and 0.87 for all stages. Conclusions In patients with melioidosis pneumonia, it is reasonable to divide the period (the whole progression of melioidosis pneumonia) into three stages to determine the prognosis.
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Affiliation(s)
- Yang Chen
- Department of West China Biomedical Big Data Center and Medical Ultrasound, West China Hospital, Sichuan University, Chengdu, China
| | - Dehuai He
- Department of West China Biomedical Big Data Center and Medical Ultrasound, West China Hospital, Sichuan University, Chengdu, China
| | - Yehua Wu
- Department of Anesthesiology, Hainan Affiliated Hospital of Hainan Medical University, Haikou, China
| | - Xiangying Li
- Department of Radiology, Central South University Xiangya School of Medicine Affiliated Haikou Hospital, Haikou, China
| | - Kaifu Yang
- Ministry of Education Key Lab for Neuroinformation, Radiation Oncology Key Laboratory of Sichuan Province, University of Electronic Science and Technology of China, Chengdu, China
| | - Yuefu Zhan
- Department of Radiology, The Third People’s Hospital of Longgang District, Shenzhen, China
- Department of Radiology, Hainan Women and Children’s Medical Centre, Haikou, China
| | - Jianqiang Chen
- Department of Radiology, The First Affiliated Hospital of Hainan Medical University, Haikou, China
| | - Xiaobo Zhou
- School of Biomedical Informatics, University of Texas Health Science Center at Houston, Houston, TX, USA
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Lippitt WL, Maier LA, Fingerlin TE, Lynch DA, Yadav R, Rieck J, Hill AC, Liao SY, Mroz MM, Barkes BQ, Chae KJ, Hwang HJ, Carlson NE. The textures of sarcoidosis: quantifying lung disease through variograms. MEDRXIV : THE PREPRINT SERVER FOR HEALTH SCIENCES 2024:2024.05.20.24307618. [PMID: 38826353 PMCID: PMC11142277 DOI: 10.1101/2024.05.20.24307618] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2024]
Abstract
Objective Sarcoidosis is a granulomatous disease affecting the lungs in over 90% of patients. Qualitative assessment of chest CT by radiologists is standard clinical practice and reliable quantification of disease from CT would support ongoing efforts to identify sarcoidosis phenotypes. Standard imaging feature engineering techniques such as radiomics suffer from extreme sensitivity to image acquisition and processing, potentially impeding generalizability of research to clinical populations. In this work, we instead investigate approaches to engineering variogram-based features with the intent to identify a robust, generalizable pipeline for image quantification in the study of sarcoidosis. Approach For a cohort of more than 300 individuals with sarcoidosis, we investigated 24 feature engineering pipelines differing by decisions for image registration to a template lung, empirical and model variogram estimation methods, and feature harmonization for CT scanner model, and subsequently 48 sets of phenotypes produced through unsupervised clustering. We then assessed sensitivity of engineered features, phenotypes produced through unsupervised clustering, and sarcoidosis disease signal strength to pipeline. Main results We found that variogram features had low to mild association with scanner model and associations were reduced by image registration. For each feature type, features were also typically robust to all pipeline decisions except image registration. Strength of disease signal as measured by association with pulmonary function testing and some radiologist visual assessments was strong (optimistic AUC ≈ 0.9, p ≪ 0.0001 in models for architectural distortion, conglomerate mass, fibrotic abnormality, and traction bronchiectasis) and fairly consistent across engineering approaches regardless of registration and harmonization for CT scanner. Significance Variogram-based features appear to be a suitable approach to image quantification in support of generalizable research in pulmonary sarcoidosis.
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Affiliation(s)
- William L Lippitt
- Dept of Biostatistics and Informatics, Uni. of Colorado Anschutz Medical Campus, Aurora, CO, USA
| | - Lisa A Maier
- Dept of Medicine, National Jewish Health, Denver, CO, USA
- Dept of Medicine, Uni. of Colorado Anschutz Medical Campus, Aurora, CO, USA
- Dept of Environmental and Occupational Health, Uni. of Colorado Anschutz Medical Campus, Aurora, CO, USA
| | - Tasha E Fingerlin
- Dept of Biostatistics and Informatics, Uni. of Colorado Anschutz Medical Campus, Aurora, CO, USA
- Dept of Immunology and Genomic Medicine, National Jewish Health, Denver, CO, USA
| | - David A Lynch
- Dept of Radiology, National Jewish Health, Denver, CO, USA
| | - Ruchi Yadav
- Dept of Diagnostic Radiology, Cleveland Clinic, Cleveland, OH, USA
| | - Jared Rieck
- Dept of Biostatistics and Informatics, Uni. of Colorado Anschutz Medical Campus, Aurora, CO, USA
| | - Andrew C Hill
- Dept of Biostatistics and Informatics, Uni. of Colorado Anschutz Medical Campus, Aurora, CO, USA
| | - Shu-Yi Liao
- Dept of Medicine, National Jewish Health, Denver, CO, USA
- Dept of Medicine, Uni. of Colorado Anschutz Medical Campus, Aurora, CO, USA
| | | | | | - Kum Ju Chae
- Dept of Radiology, Research Institute of Clinical Medicine of Jeonbuk National University-Biomedical Research Institute of Jeonbuk National University Hospital, Jeonju, Jeollabuk-do, Korea
| | - Hye Jeon Hwang
- Dept of Radiology and Research Institute of Radiology, University of Ulsan College of Medicine, Asan Medical Center, 86 Asanbyeongwon-Gil, Songpa-Gu, Seoul, Korea
| | - Nichole E Carlson
- Dept of Biostatistics and Informatics, Uni. of Colorado Anschutz Medical Campus, Aurora, CO, USA
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Koçak B, Yüzkan S, Mutlu S, Karagülle M, Kala A, Kadıoğlu M, Solak S, Sunman Ş, Temiz ZH, Ganiyusufoğlu AK. Influence of image preprocessing on the segmentation-based reproducibility of radiomic features: in vivo experiments on discretization and resampling parameters. Diagn Interv Radiol 2024; 30:152-162. [PMID: 38073244 PMCID: PMC11095065 DOI: 10.4274/dir.2023.232543] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2023] [Accepted: 11/14/2023] [Indexed: 05/15/2024]
Abstract
PURPOSE To systematically investigate the impact of image preprocessing parameters on the segmentation-based reproducibility of magnetic resonance imaging (MRI) radiomic features. METHODS The MRI scans of 50 patients were included from the multi-institutional Brain Tumor Segmentation 2021 public glioma dataset. Whole tumor volumes were manually segmented by two independent readers, with the participation of eight readers. Radiomic features were extracted from two sequences: T2-weighted (T2) and contrast-enhanced T1-weighted (T1ce). Two methods were considered for discretization: bin count (i.e., relative discretization) and bin width (i.e., absolute discretization). Ten discretization (five for each method) and five resampling parameters were varied while other parameters were fixed. The intraclass correlation coefficient (ICC) was used for reliability analysis based on two commonly used cut-off values (0.75 and 0.90). RESULTS Image preprocessing parameters had a significant impact on the segmentation-based reproducibility of radiomic features. The bin width method yielded more reproducible features than the bin count method. In discretization experiments using the bin width on both sequences, according to the ICC cut-off values of 0.75 and 0.90, the rate of reproducible features ranged from 70% to 84% and from 35% to 57%, respectively, with an increasing percentage trend as parameter values decreased (from 84 to 5 for T2; 100 to 6 for T1ce). In the resampling experiments, these ranged from 53% to 74% and from 10% to 20%, respectively, with an increasing percentage trend from lower to higher parameter values (physical voxel size; from 1 x 1 x 1 to 2 x 2 x 2 mm3). CONCLUSION The segmentation-based reproducibility of radiomic features appears to be substantially influenced by discretization and resampling parameters. Our findings indicate that the bin width method should be used for discretization and lower bin width and higher resampling values should be used to allow more reproducible features.
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Affiliation(s)
- Burak Koçak
- University of Health Sciences, Başakşehir Çam and Sakura City Hospital, Clinic of Radiology, İstanbul, Türkiye
| | - Sabahattin Yüzkan
- University of Health Sciences, Başakşehir Çam and Sakura City Hospital, Clinic of Radiology, İstanbul, Türkiye
| | - Samet Mutlu
- University of Health Sciences, Başakşehir Çam and Sakura City Hospital, Clinic of Radiology, İstanbul, Türkiye
| | - Mehmet Karagülle
- University of Health Sciences, Başakşehir Çam and Sakura City Hospital, Clinic of Radiology, İstanbul, Türkiye
| | - Ahmet Kala
- University of Health Sciences, Başakşehir Çam and Sakura City Hospital, Clinic of Radiology, İstanbul, Türkiye
| | - Mehmet Kadıoğlu
- University of Health Sciences, Başakşehir Çam and Sakura City Hospital, Clinic of Radiology, İstanbul, Türkiye
| | - Sıla Solak
- University of Health Sciences, Başakşehir Çam and Sakura City Hospital, Clinic of Radiology, İstanbul, Türkiye
| | - Şeyma Sunman
- University of Health Sciences, Başakşehir Çam and Sakura City Hospital, Clinic of Radiology, İstanbul, Türkiye
| | - Zişan Hayriye Temiz
- University of Health Sciences, Başakşehir Çam and Sakura City Hospital, Clinic of Radiology, İstanbul, Türkiye
| | - Ali Kürşad Ganiyusufoğlu
- University of Health Sciences, Başakşehir Çam and Sakura City Hospital, Clinic of Radiology, İstanbul, Türkiye
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Louis T, Lucia F, Cousin F, Mievis C, Jansen N, Duysinx B, Le Pennec R, Visvikis D, Nebbache M, Rehn M, Hamya M, Geier M, Salaun PY, Schick U, Hatt M, Coucke P, Lovinfosse P, Hustinx R. Identification of CT radiomic features robust to acquisition and segmentation variations for improved prediction of radiotherapy-treated lung cancer patient recurrence. Sci Rep 2024; 14:9028. [PMID: 38641673 PMCID: PMC11031577 DOI: 10.1038/s41598-024-58551-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2023] [Accepted: 04/01/2024] [Indexed: 04/21/2024] Open
Abstract
The primary objective of the present study was to identify a subset of radiomic features extracted from primary tumor imaged by computed tomography of early-stage non-small cell lung cancer patients, which remain unaffected by variations in segmentation quality and in computed tomography image acquisition protocol. The robustness of these features to segmentation variations was assessed by analyzing the correlation of feature values extracted from lesion volumes delineated by two annotators. The robustness to variations in acquisition protocol was evaluated by examining the correlation of features extracted from high-dose and low-dose computed tomography scans, both of which were acquired for each patient as part of the stereotactic body radiotherapy planning process. Among 106 radiomic features considered, 21 were identified as robust. An analysis including univariate and multivariate assessments was subsequently conducted to estimate the predictive performance of these robust features on the outcome of early-stage non-small cell lung cancer patients treated with stereotactic body radiation therapy. The univariate predictive analysis revealed that robust features demonstrated superior predictive potential compared to non-robust features. The multivariate analysis indicated that linear regression models built with robust features displayed greater generalization capabilities by outperforming other models in predicting the outcomes of an external validation dataset.
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Affiliation(s)
- Thomas Louis
- Division of Nuclear Medicine and Oncological Imaging, University Hospital of Liège, Liège, Belgium.
| | - François Lucia
- Division of Nuclear Medicine and Oncological Imaging, University Hospital of Liège, Liège, Belgium.
- Radiation Oncology Department, University Hospital of Brest, Brest, France.
- LaTIM, INSERM, UMR 1101, University of Brest, Brest, France.
| | - François Cousin
- Division of Nuclear Medicine and Oncological Imaging, University Hospital of Liège, Liège, Belgium
| | - Carole Mievis
- Department of Radiotherapy Oncology, University Hospital of Liège, Liège, Belgium
| | - Nicolas Jansen
- Department of Radiotherapy Oncology, University Hospital of Liège, Liège, Belgium
| | - Bernard Duysinx
- Division of Pulmonology, University Hospital of Liège, Liège, Belgium
| | - Romain Le Pennec
- Nuclear Medicine Department, University Hospital of Brest, Brest, France
- GETBO INSERM UMR 1304, University of Brest, UBO, Brest, France
| | | | - Malik Nebbache
- Radiation Oncology Department, University Hospital of Brest, Brest, France
| | - Martin Rehn
- Radiation Oncology Department, University Hospital of Brest, Brest, France
| | - Mohamed Hamya
- Radiation Oncology Department, University Hospital of Brest, Brest, France
| | - Margaux Geier
- Medical Oncology Department, University Hospital of Brest, Brest, France
| | - Pierre-Yves Salaun
- Nuclear Medicine Department, University Hospital of Brest, Brest, France
- GETBO INSERM UMR 1304, University of Brest, UBO, Brest, France
| | - Ulrike Schick
- Radiation Oncology Department, University Hospital of Brest, Brest, France
- LaTIM, INSERM, UMR 1101, University of Brest, Brest, France
| | - Mathieu Hatt
- LaTIM, INSERM, UMR 1101, University of Brest, Brest, France
| | - Philippe Coucke
- Department of Radiotherapy Oncology, University Hospital of Liège, Liège, Belgium
| | - Pierre Lovinfosse
- Division of Nuclear Medicine and Oncological Imaging, University Hospital of Liège, Liège, Belgium
| | - Roland Hustinx
- Division of Nuclear Medicine and Oncological Imaging, University Hospital of Liège, Liège, Belgium
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Levi R, Mollura M, Savini G, Garoli F, Battaglia M, Ammirabile A, Cappellini LA, Superbi S, Grimaldi M, Barbieri R, Politi LS. CT Cadaveric dataset for Radiomics features stability assessment in lumbar vertebrae. Sci Data 2024; 11:366. [PMID: 38605079 PMCID: PMC11009306 DOI: 10.1038/s41597-024-03191-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2023] [Accepted: 03/26/2024] [Indexed: 04/13/2024] Open
Abstract
Radiomics features (RFs) studies have showed limitations in the reproducibility of RFs in different acquisition settings. To date, reproducibility studies using CT images mainly rely on phantoms, due to the harness of patient exposure to X-rays. The provided CadAIver dataset has the aims of evaluating how CT scanner parameters effect radiomics features on cadaveric donor. The dataset comprises 112 unique CT acquisitions of a cadaveric truck acquired on 3 different CT scanners varying KV, mA, field-of-view, and reconstruction kernel settings. Technical validation of the CadAIver dataset comprises a comprehensive univariate and multivariate GLM approach to assess stability of each RFs extracted from lumbar vertebrae. The complete dataset is publicly available to be applied for future research in the RFs field, and could foster the creation of a collaborative open CT image database to increase the sample size, the range of available scanners, and the available body districts.
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Affiliation(s)
- Riccardo Levi
- Neuroradiology Department, IRCCS Humanitas Research Hospital, Via Manzoni 56, Rozzano, 20089, Milan, Italy
| | - Maximiliano Mollura
- Department of Electronic, Information and Bioengineering, Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133, Milan, Italy
| | - Giovanni Savini
- Neuroradiology Department, IRCCS Humanitas Research Hospital, Via Manzoni 56, Rozzano, 20089, Milan, Italy
- Department of Biomedical Sciences, Humanitas University, Via Rita Levi Montalcini 4, Pieve Emanuele, 20072, Milan, Italy
| | - Federico Garoli
- Neuroradiology Department, IRCCS Humanitas Research Hospital, Via Manzoni 56, Rozzano, 20089, Milan, Italy
- Department of Biomedical Sciences, Humanitas University, Via Rita Levi Montalcini 4, Pieve Emanuele, 20072, Milan, Italy
| | - Massimiliano Battaglia
- Neuroradiology Department, IRCCS Humanitas Research Hospital, Via Manzoni 56, Rozzano, 20089, Milan, Italy
- Department of Biomedical Sciences, Humanitas University, Via Rita Levi Montalcini 4, Pieve Emanuele, 20072, Milan, Italy
| | - Angela Ammirabile
- Neuroradiology Department, IRCCS Humanitas Research Hospital, Via Manzoni 56, Rozzano, 20089, Milan, Italy
- Department of Biomedical Sciences, Humanitas University, Via Rita Levi Montalcini 4, Pieve Emanuele, 20072, Milan, Italy
| | - Luca A Cappellini
- Neuroradiology Department, IRCCS Humanitas Research Hospital, Via Manzoni 56, Rozzano, 20089, Milan, Italy
- Department of Biomedical Sciences, Humanitas University, Via Rita Levi Montalcini 4, Pieve Emanuele, 20072, Milan, Italy
| | - Simona Superbi
- Neuroradiology Department, IRCCS Humanitas Research Hospital, Via Manzoni 56, Rozzano, 20089, Milan, Italy
| | - Marco Grimaldi
- Neuroradiology Department, IRCCS Humanitas Research Hospital, Via Manzoni 56, Rozzano, 20089, Milan, Italy
| | - Riccardo Barbieri
- Department of Electronic, Information and Bioengineering, Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133, Milan, Italy
| | - Letterio S Politi
- Neuroradiology Department, IRCCS Humanitas Research Hospital, Via Manzoni 56, Rozzano, 20089, Milan, Italy.
- Department of Biomedical Sciences, Humanitas University, Via Rita Levi Montalcini 4, Pieve Emanuele, 20072, Milan, Italy.
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Varghese BA, Cen SY, Jensen K, Levy J, Andersen HK, Schulz A, Lei X, Duddalwar VA, Goodenough DJ. Investigating the role of imaging factors in the variability of CT-based texture analysis metrics. J Appl Clin Med Phys 2024; 25:e14192. [PMID: 37962032 PMCID: PMC11005980 DOI: 10.1002/acm2.14192] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2023] [Revised: 08/02/2023] [Accepted: 10/12/2023] [Indexed: 11/15/2023] Open
Abstract
OBJECTIVE This study assesses the robustness of first-order radiomic texture features namely interquartile range (IQR), coefficient of variation (CV) and standard deviation (SD) derived from computed tomography (CT) images by varying dose, reconstruction algorithms and slice thickness using scans of a uniform water phantom, a commercial anthropomorphic liver phantom, and a human liver in-vivo. MATERIALS AND METHODS Scans were acquired on a 16 cm detector GE Revolution Apex Edition CT scanner with variations across three different nominal slice thicknesses: 0.625, 1.25, and 2.5 mm, three different dose levels: CTDIvol of 13.86 mGy for the standard dose, 40% reduced dose and 60% reduced dose and two different reconstruction algorithms: a deep learning image reconstruction (DLIR-high) algorithm and a hybrid iterative reconstruction (IR) algorithm ASiR-V50% (AV50) were explored, varying one at a time. To assess the effect of non-linear modifications of images by AV50 and DLIR-high, images of the water phantom were also reconstructed using filtered back projection (FBP). Quantitative measures of IQR, CV and SD were extracted from twelve pre-selected, circular (1 cm diameter) regions of interest (ROIs) capturing different texture patterns across all scans. RESULTS Across all scans, imaging, and reconstruction settings, CV, IQR and SD were observed to increase with reduction in dose and slice thickness. An exception to this observation was found when using FBP reconstruction. Lower values of CV, IQR and SD were observed in DLIR-high reconstructions compared to AV50 and FBP. The Poisson statistics were more stringently noted in FBP than DLIR-high and AV50, due to the non-linear nature of the latter two algorithms. CONCLUSION Variation in image noise due to dose reduction algorithms, tube current, and slice thickness show a consistent trend across phantom and patient scans. Prospective evaluation across multiple centers, scanners and imaging protocols is needed for establishing quality assurance standards of radiomics.
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Affiliation(s)
- Bino Abel Varghese
- Keck Medical CenterDepartment of RadiologyUniversity of Southern CaliforniaLos AngelesCaliforniaUSA
| | - Steven Yong Cen
- Keck Medical CenterDepartment of RadiologyUniversity of Southern CaliforniaLos AngelesCaliforniaUSA
| | - Kristin Jensen
- Department of Physics and Computational RadiologyOsloNorway
| | | | | | - Anselm Schulz
- Department of Radiology and Nuclear MedicineOslo University HospitalOsloNorway
| | - Xiaomeng Lei
- Keck Medical CenterDepartment of RadiologyUniversity of Southern CaliforniaLos AngelesCaliforniaUSA
| | - Vinay Anant Duddalwar
- Keck Medical CenterDepartment of RadiologyUniversity of Southern CaliforniaLos AngelesCaliforniaUSA
| | - David John Goodenough
- Department of RadiologyGeorge Washington UniversityWashingtonDistrict of ColumbiaUSA
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Varghese BA, Cen SY, Jensen K, Levy J, Andersen HK, Schulz A, Lei X, Duddalwar VA, Goodenough DJ. Technical and clinical considerations of a physical liver phantom for CT radiomics analysis. J Appl Clin Med Phys 2024; 25:e14309. [PMID: 38386922 PMCID: PMC11005983 DOI: 10.1002/acm2.14309] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2023] [Revised: 01/17/2024] [Accepted: 02/03/2024] [Indexed: 02/24/2024] Open
Abstract
OBJECTIVE This study identifies key characteristics to help build a physical liver computed tomography (CT) phantom for radiomics harmonization; particularly, the higher-order texture metrics. MATERIALS AND METHODS CT scans of a radiomics phantom comprising of 18 novel 3D printed inserts with varying size, shape, and material combinations were acquired on a 64-slice CT scanner (Brilliance 64, Philips Healthcare). The images were acquired at 120 kV, 250 mAs, CTDIvol of 16.36 mGy, 2 mm slice thickness, and iterative noise-reduction reconstruction (iDose, Philips Healthcare, Andover, MA). Radiomics analysis was performed using the Cancer Imaging Phenomics Toolkit (CaPTk), following automated segmentation of 3D regions of interest (ROI) of the 18 inserts. The findings were compared to three additional ROI obtained of an anthropomorphic liver phantom, a patient liver CT scan, and a water phantom, at comparable imaging settings. Percentage difference in radiomic metrics values between phantom and tissue was used to assess the biological equivalency and <10% was used to claim equivalent. RESULTS The HU for all 18 ROI from the phantom ranged from -30 to 120 which is within clinically observed HU range of the liver, showing that our phantom material (T3-6B) is representative of biological CT tissue densities (liver) with >50% radiomic features having <10% difference from liver tissue. Based on the assessment of the Neighborhood Gray Tone Difference Matrix (NGTDM) metrics it is evident that the water phantom ROI show extreme values compared to the ROIs from the phantom. This result may further reinforce the difference between a structureless quantity such as water HU values and tissue HU values found in liver. CONCLUSION The 3-D printed patterns of the constructed radiomics phantom cover a wide span of liver tissue textures seen in CT images. Using our results, texture metrics can be selectively harmonized to establish clinically relevant and reliable radiomics panels.
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Affiliation(s)
- Bino Abel Varghese
- Department of RadiologyKeck Medical CenterUniversity of Southern CaliforniaLos AngelesCaliforniaUSA
| | - Steven Yong Cen
- Department of RadiologyKeck Medical CenterUniversity of Southern CaliforniaLos AngelesCaliforniaUSA
| | - Kristin Jensen
- Department of Physics and Computational RadiologyOslo University HospitalOsloNorway
| | | | | | - Anselm Schulz
- Department of Radiology and Nuclear MedicineOslo University HospitalOsloNorway
| | - Xiaomeng Lei
- Department of RadiologyKeck Medical CenterUniversity of Southern CaliforniaLos AngelesCaliforniaUSA
| | - Vinay Anant Duddalwar
- Department of RadiologyKeck Medical CenterUniversity of Southern CaliforniaLos AngelesCaliforniaUSA
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48
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Zarei M, Abadi E, Vancoillie L, Samei E. Protocol selection formalism for minimizing detectable differences in morphological radiomics features of lung lesions in repeated CT acquisitions. J Med Imaging (Bellingham) 2024; 11:025501. [PMID: 38680209 PMCID: PMC11047768 DOI: 10.1117/1.jmi.11.2.025501] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2023] [Revised: 02/28/2024] [Accepted: 04/03/2024] [Indexed: 05/01/2024] Open
Abstract
Background The accuracy of morphological radiomic features (MRFs) can be affected by various acquisition settings and imaging conditions. To ensure that clinically irrelevant changes do not reduce sensitivity to capture the radiomics changes between successive acquisitions, it is essential to determine the optimal imaging systems and protocols to use. Purpose The main goal of our study was to optimize CT protocols and minimize the minimum detectable difference (MDD) in successive acquisitions of MRFs. Method MDDs were derived based on the previous research involving 15 realizations of nodule models at two different sizes. Our study involved simulations of two consecutive acquisitions using 297 different imaging conditions, representing variations in scanners' reconstruction kernels, dose levels, and slice thicknesses. Parametric polynomial models were developed to establish correlations between imaging system characteristics, lesion size, and MDDs. Additionally, polynomial models were used to model the correlation of the imaging system parameters. Optimization problems were formulated for each MRF to minimize the approximated function. Feature importance was determined for each MRF through permutation feature analysis. The proposed method was compared to the recommended guidelines by the quantitative imaging biomarkers alliance (QIBA). Results The feature importance analysis showed that lesion size is the most influential parameter to estimate the MDDs in most of the MRFs. Our study revealed that thinner slices and higher doses had a measurable impact on reducing the MDDs. Higher spatial resolution and lower noise magnitude were identified as the most suitable or noninferior acquisition settings. Compared to QIBA, the proposed protocol selection guideline demonstrated a reduced coefficient of variation, with values decreasing from 1.49 to 1.11 for large lesions and from 1.68 to 1.12 for small lesions. Conclusion The protocol optimization framework provides means to assess and optimize protocols to minimize the MDD to increase the sensitivity of the measurements in lung cancer screening.
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Affiliation(s)
- Mojtaba Zarei
- Duke University, Center for Virtual Imaging Trials, Carl E. Ravin Advanced Imaging Laboratories, Durham, North Carolina, United States
- Duke University, Pratt School of Engineering, Department of Electrical and Computer Engineering, Durham, North Carolina, United States
- Duke University, Department of Radiology, Durham, North Carolina, United States
- Duke University, Duke University School of Medicine, Durham, North Carolina, United States
| | - Ehsan Abadi
- Duke University, Center for Virtual Imaging Trials, Carl E. Ravin Advanced Imaging Laboratories, Durham, North Carolina, United States
- Duke University, Pratt School of Engineering, Department of Electrical and Computer Engineering, Durham, North Carolina, United States
- Duke University, Department of Radiology, Durham, North Carolina, United States
- Duke University, Duke University School of Medicine, Durham, North Carolina, United States
| | - Liesbeth Vancoillie
- Duke University, Center for Virtual Imaging Trials, Carl E. Ravin Advanced Imaging Laboratories, Durham, North Carolina, United States
- Duke University, Pratt School of Engineering, Department of Electrical and Computer Engineering, Durham, North Carolina, United States
- Duke University, Department of Radiology, Durham, North Carolina, United States
- Duke University, Duke University School of Medicine, Durham, North Carolina, United States
| | - Ehsan Samei
- Duke University, Center for Virtual Imaging Trials, Carl E. Ravin Advanced Imaging Laboratories, Durham, North Carolina, United States
- Duke University, Pratt School of Engineering, Department of Electrical and Computer Engineering, Durham, North Carolina, United States
- Duke University, Department of Radiology, Durham, North Carolina, United States
- Duke University, Duke University School of Medicine, Durham, North Carolina, United States
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49
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Mukherjee S, Korfiatis P, Patnam NG, Trivedi KH, Karbhari A, Suman G, Fletcher JG, Goenka AH. Assessing the robustness of a machine-learning model for early detection of pancreatic adenocarcinoma (PDA): evaluating resilience to variations in image acquisition and radiomics workflow using image perturbation methods. Abdom Radiol (NY) 2024; 49:964-974. [PMID: 38175255 DOI: 10.1007/s00261-023-04127-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2023] [Revised: 11/08/2023] [Accepted: 11/12/2023] [Indexed: 01/05/2024]
Abstract
PURPOSE To evaluate robustness of a radiomics-based support vector machine (SVM) model for detection of visually occult PDA on pre-diagnostic CTs by simulating common variations in image acquisition and radiomics workflow using image perturbation methods. METHODS Eighteen algorithmically generated-perturbations, which simulated variations in image noise levels (σ, 2σ, 3σ, 5σ), image rotation [both CT image and the corresponding pancreas segmentation mask by 45° and 90° in axial plane], voxel resampling (isotropic and anisotropic), gray-level discretization [bin width (BW) 32 and 64)], and pancreas segmentation (sequential erosions by 3, 4, 6, and 8 pixels and dilations by 3, 4, and 6 pixels from the boundary), were introduced to the original (unperturbed) test subset (n = 128; 45 pre-diagnostic CTs, 83 control CTs with normal pancreas). Radiomic features were extracted from pancreas masks of these additional test subsets, and the model's performance was compared vis-a-vis the unperturbed test subset. RESULTS The model correctly classified 43 out of 45 pre-diagnostic CTs and 75 out of 83 control CTs in the unperturbed test subset, achieving 92.2% accuracy and 0.98 AUC. Model's performance was unaffected by a three-fold increase in noise level except for sensitivity declining to 80% at 3σ (p = 0.02). Performance remained comparable vis-a-vis the unperturbed test subset despite variations in image rotation (p = 0.99), voxel resampling (p = 0.25-0.31), change in gray-level BW to 32 (p = 0.31-0.99), and erosions/dilations up to 4 pixels from the pancreas boundary (p = 0.12-0.34). CONCLUSION The model's high performance for detection of visually occult PDA was robust within a broad range of clinically relevant variations in image acquisition and radiomics workflow.
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Affiliation(s)
- Sovanlal Mukherjee
- Divisions of Abdominal and Nuclear Imaging, Nuclear Radiology Fellowship, Nuclear Radiology Research Operations, Enterprise PET/MR Research and Development, Department of Radiology, Mayo Clinic, 200 First St SW, Charlton 1, Rochester, MN, 55905, USA
| | - Panagiotis Korfiatis
- Divisions of Abdominal and Nuclear Imaging, Nuclear Radiology Fellowship, Nuclear Radiology Research Operations, Enterprise PET/MR Research and Development, Department of Radiology, Mayo Clinic, 200 First St SW, Charlton 1, Rochester, MN, 55905, USA
| | - Nandakumar G Patnam
- Divisions of Abdominal and Nuclear Imaging, Nuclear Radiology Fellowship, Nuclear Radiology Research Operations, Enterprise PET/MR Research and Development, Department of Radiology, Mayo Clinic, 200 First St SW, Charlton 1, Rochester, MN, 55905, USA
| | - Kamaxi H Trivedi
- Divisions of Abdominal and Nuclear Imaging, Nuclear Radiology Fellowship, Nuclear Radiology Research Operations, Enterprise PET/MR Research and Development, Department of Radiology, Mayo Clinic, 200 First St SW, Charlton 1, Rochester, MN, 55905, USA
| | - Aashna Karbhari
- Divisions of Abdominal and Nuclear Imaging, Nuclear Radiology Fellowship, Nuclear Radiology Research Operations, Enterprise PET/MR Research and Development, Department of Radiology, Mayo Clinic, 200 First St SW, Charlton 1, Rochester, MN, 55905, USA
| | - Garima Suman
- Divisions of Abdominal and Nuclear Imaging, Nuclear Radiology Fellowship, Nuclear Radiology Research Operations, Enterprise PET/MR Research and Development, Department of Radiology, Mayo Clinic, 200 First St SW, Charlton 1, Rochester, MN, 55905, USA
| | - Joel G Fletcher
- Divisions of Abdominal and Nuclear Imaging, Nuclear Radiology Fellowship, Nuclear Radiology Research Operations, Enterprise PET/MR Research and Development, Department of Radiology, Mayo Clinic, 200 First St SW, Charlton 1, Rochester, MN, 55905, USA
| | - Ajit H Goenka
- Divisions of Abdominal and Nuclear Imaging, Nuclear Radiology Fellowship, Nuclear Radiology Research Operations, Enterprise PET/MR Research and Development, Department of Radiology, Mayo Clinic, 200 First St SW, Charlton 1, Rochester, MN, 55905, USA.
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50
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Schön F, Kieslich A, Nebelung H, Riediger C, Hoffmann RT, Zwanenburg A, Löck S, Kühn JP. Comparative analysis of radiomics and deep-learning algorithms for survival prediction in hepatocellular carcinoma. Sci Rep 2024; 14:590. [PMID: 38182664 PMCID: PMC10770355 DOI: 10.1038/s41598-023-50451-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2023] [Accepted: 12/20/2023] [Indexed: 01/07/2024] Open
Abstract
To examine the comparative robustness of computed tomography (CT)-based conventional radiomics and deep-learning convolutional neural networks (CNN) to predict overall survival (OS) in HCC patients. Retrospectively, 114 HCC patients with pretherapeutic CT of the liver were randomized into a development (n = 85) and a validation (n = 29) cohort, including patients of all tumor stages and several applied therapies. In addition to clinical parameters, image annotations of the liver parenchyma and of tumor findings on CT were available. Cox-regression based on radiomics features and CNN models were established and combined with clinical parameters to predict OS. Model performance was assessed using the concordance index (C-index). Log-rank tests were used to test model-based patient stratification into high/low-risk groups. The clinical Cox-regression model achieved the best validation performance for OS (C-index [95% confidence interval (CI)] 0.74 [0.57-0.86]) with a significant difference between the risk groups (p = 0.03). In image analysis, the CNN models (lowest C-index [CI] 0.63 [0.39-0.83]; highest C-index [CI] 0.71 [0.49-0.88]) were superior to the corresponding radiomics models (lowest C-index [CI] 0.51 [0.30-0.73]; highest C-index [CI] 0.66 [0.48-0.79]). A significant risk stratification was not possible (p > 0.05). Under clinical conditions, CNN-algorithms demonstrate superior prognostic potential to predict OS in HCC patients compared to conventional radiomics approaches and could therefore provide important information in the clinical setting, especially when clinical data is limited.
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Affiliation(s)
- Felix Schön
- Institute and Polyclinic for Diagnostic and Interventional Radiology, Faculty of Medicine and University Hospital Carl Gustav Carus, TU Dresden, Dresden, Germany.
| | - Aaron Kieslich
- OncoRay‑National Center for Radiation Research in Oncology, Faculty of Medicine and University Hospital Carl Gustav Carus, TU Dresden, Helmholtz-Zentrum Dresden-Rossendorf, Dresden, Germany.
| | - Heiner Nebelung
- Institute and Polyclinic for Diagnostic and Interventional Radiology, Faculty of Medicine and University Hospital Carl Gustav Carus, TU Dresden, Dresden, Germany
| | - Carina Riediger
- Department of Visceral, Thoracic and Vascular Surgery, Faculty of Medicine and University Hospital Carl Gustav Carus, TU Dresden, Dresden, Germany
| | - Ralf-Thorsten Hoffmann
- Institute and Polyclinic for Diagnostic and Interventional Radiology, Faculty of Medicine and University Hospital Carl Gustav Carus, TU Dresden, Dresden, Germany
| | - Alex Zwanenburg
- OncoRay‑National Center for Radiation Research in Oncology, Faculty of Medicine and University Hospital Carl Gustav Carus, TU Dresden, Helmholtz-Zentrum Dresden-Rossendorf, Dresden, Germany
- National Center for Tumor Diseases (NCT/UCC) Dresden, Dresden, Germany
- German Cancer Research Center (DKFZ), Heidelberg, Germany
| | - Steffen Löck
- OncoRay‑National Center for Radiation Research in Oncology, Faculty of Medicine and University Hospital Carl Gustav Carus, TU Dresden, Helmholtz-Zentrum Dresden-Rossendorf, Dresden, Germany
| | - Jens-Peter Kühn
- Institute and Polyclinic for Diagnostic and Interventional Radiology, Faculty of Medicine and University Hospital Carl Gustav Carus, TU Dresden, Dresden, Germany
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