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Chen K, Wang C, Wei Y, Ma S, Huang W, Dong Y, Wang Y. Machine learning and population pharmacokinetics: a hybrid approach for optimizing vancomycin therapy in sepsis patients. Microbiol Spectr 2025:e0049925. [PMID: 40162774 DOI: 10.1128/spectrum.00499-25] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2025] [Accepted: 03/11/2025] [Indexed: 04/02/2025] Open
Abstract
Predicting vancomycin exposure is essential for optimizing dosing regimens in sepsis patients. While population pharmacokinetic (PPK) models are commonly used, their performance is limited. Machine learning (ML) models offer advantages over PPK models, but it remains unclear which model-PPK, Bayesian, ML, or hybrid PPK-ML-is best for predicting vancomycin exposure across different clinical scenarios in sepsis patients. This study compares the performance of these models in predicting the 24 hour area under the blood concentration curve (AUC24) to support precision dosing in sepsis care. Data from sepsis patients treated with intravenous vancomycin were sourced from the MIMIC-IV database. The data set was split into training and testing sets, and four models-PPK, Bayesian, ML, and hybrid-were developed. In the testing set, AUC24 was predicted using all models, and performance was evaluated using mean absolute error, mean squared error, root mean squared error, mean absolute percentage error (MAPE), and R². A total of 4,059 patients were included. In the absence of vancomycin concentration data, the hybrid model outperformed both PPK and Bayesian models, with MAPE improvements of 58% and 17%, respectively. When vancomycin concentration data were available, the Bayesian model demonstrated the best performance (MAPE: 13.37% vs 68.17%, 34.17%, and 28.52% for PPK, Random Forest, and hybrid models). The hybrid model is recommended to predict AUC24 when concentration data were unavailable, while the Bayesian model should be used when concentrations were available, offering robust strategies for precise vancomycin dosing in sepsis patients. IMPORTANCE This study evaluates and compares the performance of four models-PPK, Bayesian, ML, and hybrid PPK-ML-in predicting vancomycin exposure (AUC24) in sepsis patients using real-world data from the MIMIC-IV database. These results underscore the importance of selecting appropriate models based on the availability of concentration data, providing valuable guidance for precision dosing strategies in sepsis care. This work contributes to advancing personalized vancomycin therapy, optimizing dosing regimens, and improving clinical outcomes in sepsis patients.
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Affiliation(s)
- Keyu Chen
- Department of Pharmacy, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China
| | - Chuhui Wang
- Department of Pharmacy, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China
| | - Yu Wei
- Department of Pharmacy, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China
| | - Sinan Ma
- Department of Pharmacy, The Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China
| | - Weijia Huang
- Department of Pharmacy, The Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China
| | - Yalin Dong
- Department of Pharmacy, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China
| | - Yan Wang
- Department of Pharmacy, The Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China
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Sekkat H, Khallouqi A, Rhazouani OE, Halimi A. Automated Detection of Hydrocephalus in Pediatric Head Computed Tomography Using VGG 16 CNN Deep Learning Architecture and Based Automated Segmentation Workflow for Ventricular Volume Estimation. JOURNAL OF IMAGING INFORMATICS IN MEDICINE 2025:10.1007/s10278-025-01482-x. [PMID: 40108068 DOI: 10.1007/s10278-025-01482-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/30/2024] [Revised: 02/23/2025] [Accepted: 03/11/2025] [Indexed: 03/22/2025]
Abstract
Hydrocephalus, particularly congenital hydrocephalus in infants, remains underexplored in deep learning research. While deep learning has been widely applied to medical image analysis, few studies have specifically addressed the automated classification of hydrocephalus. This study proposes a convolutional neural network (CNN) model based on the VGG16 architecture to detect hydrocephalus in infant head CT images. The model integrates an automated method for ventricular volume extraction, applying windowing, histogram equalization, and thresholding techniques to segment the ventricles from surrounding brain structures. Morphological operations refine the segmentation and contours are extracted for visualization and volume measurement. The dataset consists of 105 head CT scans, each with 60 slices covering the ventricular volume, resulting in 6300 slices. Manual segmentation by three trained radiologists served as the reference standard. The automated method showed a high correlation with manual measurements, with R2 values ranging from 0.94 to 0.99. The mean absolute percentage error (MAPE) ranged 3.99 to 11.13%, while the root mean square error (RRMSE) from 4.56 to 13.74%. To improve model robustness, the dataset was preprocessed, normalized, and augmented with rotation, shifting, zooming, and flipping. The VGG16-based CNN used pre-trained convolutional layers with additional fully connected layers for classification, predicting hydrocephalus or normal labels. Performance evaluation using a multi-split strategy (15 independent splits) achieved a mean accuracy of 90.4% ± 1.2%. This study presents an automated approach for ventricular volume extraction and hydrocephalus detection, offering a promising tool for clinical and research applications with high accuracy and reduced observer bias.
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Affiliation(s)
- Hamza Sekkat
- Sciences and Engineering of Biomedicals, Biophysics and Health Laboratory, Higher Institute of Health Sciences, Hassan 1st University, Settat, 26000, Morocco.
- Department of Radiotherapy, International Clinic of Settat, Settat, Morocco.
| | - Abdellah Khallouqi
- Sciences and Engineering of Biomedicals, Biophysics and Health Laboratory, Higher Institute of Health Sciences, Hassan 1st University, Settat, 26000, Morocco
- Department of Radiology, Public Hospital of Mediouna, Mediouna, Morocco
- Department of Radiology, Private Clinic Hay Mouhamadi, Casablanca, Morocco
| | - Omar El Rhazouani
- Sciences and Engineering of Biomedicals, Biophysics and Health Laboratory, Higher Institute of Health Sciences, Hassan 1st University, Settat, 26000, Morocco
| | - Abdellah Halimi
- Sciences and Engineering of Biomedicals, Biophysics and Health Laboratory, Higher Institute of Health Sciences, Hassan 1st University, Settat, 26000, Morocco
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Rawashdeh B, Al-abdallat H, Arpali E, Thomas B, Dunn TB, Cooper M. Machine learning in solid organ transplantation: Charting the evolving landscape. World J Transplant 2025; 15:99642. [PMID: 40104197 PMCID: PMC11612896 DOI: 10.5500/wjt.v15.i1.99642] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/26/2024] [Revised: 10/17/2024] [Accepted: 11/06/2024] [Indexed: 11/26/2024] Open
Abstract
BACKGROUND Machine learning (ML), a major branch of artificial intelligence, has not only demonstrated the potential to significantly improve numerous sectors of healthcare but has also made significant contributions to the field of solid organ transplantation. ML provides revolutionary opportunities in areas such as donor-recipient matching, post-transplant monitoring, and patient care by automatically analyzing large amounts of data, identifying patterns, and forecasting outcomes. AIM To conduct a comprehensive bibliometric analysis of publications on the use of ML in transplantation to understand current research trends and their implications. METHODS On July 18, a thorough search strategy was used with the Web of Science database. ML and transplantation-related keywords were utilized. With the aid of the VOS viewer application, the identified articles were subjected to bibliometric variable analysis in order to determine publication counts, citation counts, contributing countries, and institutions, among other factors. RESULTS Of the 529 articles that were first identified, 427 were deemed relevant for bibliometric analysis. A surge in publications was observed over the last four years, especially after 2018, signifying growing interest in this area. With 209 publications, the United States emerged as the top contributor. Notably, the "Journal of Heart and Lung Transplantation" and the "American Journal of Transplantation" emerged as the leading journals, publishing the highest number of relevant articles. Frequent keyword searches revealed that patient survival, mortality, outcomes, allocation, and risk assessment were significant themes of focus. CONCLUSION The growing body of pertinent publications highlights ML's growing presence in the field of solid organ transplantation. This bibliometric analysis highlights the growing importance of ML in transplant research and highlights its exciting potential to change medical practices and enhance patient outcomes. Encouraging collaboration between significant contributors can potentially fast-track advancements in this interdisciplinary domain.
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Affiliation(s)
- Badi Rawashdeh
- Division of Transplant Surgery, Medical College of Wisconsin, Milwaukee, WI 53202, United States
| | | | - Emre Arpali
- Division of Transplant Surgery, Medical College of Wisconsin, Milwaukee, WI 53202, United States
| | - Beje Thomas
- Department of Nephrology, Medical College of Wisconsin, Milwaukee, WI 53226, United States
| | - Ty B Dunn
- Division of Transplant Surgery, Medical College of Wisconsin, Milwaukee, WI 53202, United States
| | - Matthew Cooper
- Division of Transplant Surgery, Medical College of Wisconsin, Milwaukee, WI 53202, United States
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dos Santos RR, Marumo MB, Eckeli AL, Salgado HC, Silva LEV, Tinós R, Fazan R. The use of heart rate variability, oxygen saturation, and anthropometric data with machine learning to predict the presence and severity of obstructive sleep apnea. Front Cardiovasc Med 2025; 12:1389402. [PMID: 40161388 PMCID: PMC11949982 DOI: 10.3389/fcvm.2025.1389402] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2024] [Accepted: 03/03/2025] [Indexed: 04/02/2025] Open
Abstract
Introduction Obstructive sleep apnea (OSA) is a prevalent sleep disorder with a high rate of undiagnosed patients, primarily due to the complexity of its diagnosis made by polysomnography (PSG). Considering the severe comorbidities associated with OSA, especially in the cardiovascular system, the development of early screening tools for this disease is imperative. Heart rate variability (HRV) is a simple and non-invasive approach used as a probe to evaluate cardiac autonomic modulation, with a variety of newly developed indices lacking studies with OSA patients. Objectives We aimed to evaluate numerous HRV indices, derived from linear but mainly nonlinear indices, combined or not with oxygen saturation indices, for detecting the presence and severity of OSA using machine learning models. Methods ECG waveforms were collected from 291 PSG recordings to calculate 34 HRV indices. Minimum oxygen saturation value during sleep (SatMin), the percentage of total sleep time the patient spent with oxygen saturation below 90% (T90), and patient anthropometric data were also considered as inputs to the models. The Apnea-Hypopnea Index (AHI) was used to categorize into severity classes of OSA (normal, mild, moderate, severe) to train multiclass or binary (normal-to-mild and moderate-to-severe) classification models, using the Random Forest (RF) algorithm. Since the OSA severity groups were unbalanced, we used the Synthetic Minority Over-sampling Technique (SMOTE) to oversample the minority classes. Results Multiclass models achieved a mean area under the ROC curve (AUROC) of 0.92 and 0.86 in classifying normal individuals and severe OSA patients, respectively, when using all attributes. When the groups were dichotomized into normal-to-mild OSA vs. moderate-to-severe OSA, an AUROC of 0.83 was obtained. As revealed by RF, the importance of features indicates that all feature modalities (HRV, SpO2, and anthropometric variables) contribute to the top 10 ranks. Conclusion The present study demonstrates the feasibility of using classification models to detect the presence and severity of OSA using these indices. Our findings have the potential to contribute to the development of rapid screening tools aimed at assisting individuals affected by this condition, to expedite diagnosis and initiate timely treatment.
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Affiliation(s)
- Rafael Rodrigues dos Santos
- Department of Physiology, School of Medicine of Ribeirao Preto, University of Sao Paulo, Ribeirão Preto, Brazil
| | - Matheo Bellini Marumo
- Department of Computing and Mathematics, Faculty of Philosophy, Sciences and Letters, University of Sao Paulo, Ribeirão Preto, Brazil
| | - Alan Luiz Eckeli
- Department of Neuroscience and Behavior Sciences, Division of Neurology, School of Medicine of Ribeirao Preto, University of Sao Paulo, Ribeirão Preto, Brazil
| | - Helio Cesar Salgado
- Department of Physiology, School of Medicine of Ribeirao Preto, University of Sao Paulo, Ribeirão Preto, Brazil
| | - Luiz Eduardo Virgílio Silva
- Department of Biomedical and Health Informatics, Children’s Hospital of Philadelphia, Philadelphia, PA, United States
| | - Renato Tinós
- Department of Computing and Mathematics, Faculty of Philosophy, Sciences and Letters, University of Sao Paulo, Ribeirão Preto, Brazil
| | - Rubens Fazan
- Department of Physiology, School of Medicine of Ribeirao Preto, University of Sao Paulo, Ribeirão Preto, Brazil
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Wei S, Guo X, He S, Zhang C, Chen Z, Chen J, Huang Y, Zhang F, Liu Q. Application of Machine Learning for Patients With Cardiac Arrest: Systematic Review and Meta-Analysis. J Med Internet Res 2025; 27:e67871. [PMID: 40063076 PMCID: PMC11933771 DOI: 10.2196/67871] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2024] [Revised: 12/19/2024] [Accepted: 01/16/2025] [Indexed: 03/27/2025] Open
Abstract
BACKGROUND Currently, there is a lack of effective early assessment tools for predicting the onset and development of cardiac arrest (CA). With the increasing attention of clinical researchers on machine learning (ML), some researchers have developed ML models for predicting the occurrence and prognosis of CA, with certain models appearing to outperform traditional scoring tools. However, these models still lack systematic evidence to substantiate their efficacy. OBJECTIVE This systematic review and meta-analysis was conducted to evaluate the prediction value of ML in CA for occurrence, good neurological prognosis, mortality, and the return of spontaneous circulation (ROSC), thereby providing evidence-based support for the development and refinement of applicable clinical tools. METHODS PubMed, Embase, the Cochrane Library, and Web of Science were systematically searched from their establishment until May 17, 2024. The risk of bias in all prediction models was assessed using the Prediction Model Risk of Bias Assessment Tool. RESULTS In total, 93 studies were selected, encompassing 5,729,721 in-hospital and out-of-hospital patients. The meta-analysis revealed that, for predicting CA, the pooled C-index, sensitivity, and specificity derived from the imbalanced validation dataset were 0.90 (95% CI 0.87-0.93), 0.83 (95% CI 0.79-0.87), and 0.93 (95% CI 0.88-0.96), respectively. On the basis of the balanced validation dataset, the pooled C-index, sensitivity, and specificity were 0.88 (95% CI 0.86-0.90), 0.72 (95% CI 0.49-0.95), and 0.79 (95% CI 0.68-0.91), respectively. For predicting the good cerebral performance category score 1 to 2, the pooled C-index, sensitivity, and specificity based on the validation dataset were 0.86 (95% CI 0.85-0.87), 0.72 (95% CI 0.61-0.81), and 0.79 (95% CI 0.66-0.88), respectively. For predicting CA mortality, the pooled C-index, sensitivity, and specificity based on the validation dataset were 0.85 (95% CI 0.82-0.87), 0.83 (95% CI 0.79-0.87), and 0.79 (95% CI 0.74-0.83), respectively. For predicting ROSC, the pooled C-index, sensitivity, and specificity based on the validation dataset were 0.77 (95% CI 0.74-0.80), 0.53 (95% CI 0.31-0.74), and 0.88 (95% CI 0.71-0.96), respectively. In predicting CA, the most significant modeling variables were respiratory rate, blood pressure, age, and temperature. In predicting a good cerebral performance category score 1 to 2, the most significant modeling variables in the in-hospital CA group were rhythm (shockable or nonshockable), age, medication use, and gender; the most significant modeling variables in the out-of-hospital CA group were age, rhythm (shockable or nonshockable), medication use, and ROSC. CONCLUSIONS ML represents a currently promising approach for predicting the occurrence and outcomes of CA. Therefore, in future research on CA, we may attempt to systematically update traditional scoring tools based on the superior performance of ML in specific outcomes, achieving artificial intelligence-driven enhancements. TRIAL REGISTRATION PROSPERO International Prospective Register of Systematic Reviews CRD42024518949; https://www.crd.york.ac.uk/prospero/display_record.php?RecordID=518949.
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Affiliation(s)
- Shengfeng Wei
- Department of Emergency Medicine, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, China
| | - Xiangjian Guo
- Department of Emergency Medicine, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, China
| | - Shilin He
- Department of Emergency Medicine, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, China
| | - Chunhua Zhang
- Department of Emergency Medicine, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, China
| | - Zhizhuan Chen
- Department of Emergency Medicine, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, China
| | - Jianmei Chen
- Department of Emergency Medicine, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, China
| | - Yanmei Huang
- Department of Emergency Medicine, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, China
| | - Fan Zhang
- Department of Emergency Medicine, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, China
| | - Qiangqiang Liu
- Department of Emergency Medicine, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, China
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Herazo-Álvarez J, Mora M, Cuadros-Orellana S, Vilches-Ponce K, Hernández-García R. A review of neural networks for metagenomic binning. Brief Bioinform 2025; 26:bbaf065. [PMID: 40131312 PMCID: PMC11934572 DOI: 10.1093/bib/bbaf065] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2024] [Revised: 01/02/2025] [Accepted: 03/07/2025] [Indexed: 03/26/2025] Open
Abstract
One of the main goals of metagenomic studies is to describe the taxonomic diversity of microbial communities. A crucial step in metagenomic analysis is metagenomic binning, which involves the (supervised) classification or (unsupervised) clustering of metagenomic sequences. Various machine learning models have been applied to address this task. In this review, the contributions of artificial neural networks (ANN) in the context of metagenomic binning are detailed, addressing both supervised, unsupervised, and semi-supervised approaches. 34 ANN-based binning tools are systematically compared, detailing their architectures, input features, datasets, advantages, disadvantages, and other relevant aspects. The findings reveal that deep learning approaches, such as convolutional neural networks and autoencoders, achieve higher accuracy and scalability than traditional methods. Gaps in benchmarking practices are highlighted, and future directions are proposed, including standardized datasets and optimization of architectures, for third-generation sequencing. This review provides support to researchers in identifying trends and selecting suitable tools for the metagenomic binning problem.
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Affiliation(s)
- Jair Herazo-Álvarez
- Doctorado en Modelamiento Matemático Aplicado, Universidad Católica del Maule, Talca, Maule 3480564, Chile
- Laboratory of Technological Research in Pattern Recognition (LITRP), Universidad Católica del Maule, Talca, Maule 3480564, Chile
| | - Marco Mora
- Laboratory of Technological Research in Pattern Recognition (LITRP), Universidad Católica del Maule, Talca, Maule 3480564, Chile
- Departamento de Computación e Industrias, Facultad de Ciencias de la Ingeniería, Universidad Católica del Maule, Talca, Maule 3480564, Chile
| | - Sara Cuadros-Orellana
- Laboratory of Technological Research in Pattern Recognition (LITRP), Universidad Católica del Maule, Talca, Maule 3480564, Chile
- Centro de Biotecnología de los Recursos Naturales (CENBio), Universidad Católica del Maule, Talca, Maule 3480564, Chile
| | - Karina Vilches-Ponce
- Laboratory of Technological Research in Pattern Recognition (LITRP), Universidad Católica del Maule, Talca, Maule 3480564, Chile
| | - Ruber Hernández-García
- Laboratory of Technological Research in Pattern Recognition (LITRP), Universidad Católica del Maule, Talca, Maule 3480564, Chile
- Departamento de Computación e Industrias, Facultad de Ciencias de la Ingeniería, Universidad Católica del Maule, Talca, Maule 3480564, Chile
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Nabi AE, Pouladvand P, Liu L, Hua N, Ayubcha C. Machine Learning in Drug Development for Neurological Diseases: A Review of Blood Brain Barrier Permeability Prediction Models. Mol Inform 2025; 44:e202400325. [PMID: 40146590 PMCID: PMC11949286 DOI: 10.1002/minf.202400325] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2024] [Revised: 01/25/2025] [Accepted: 02/05/2025] [Indexed: 03/29/2025]
Abstract
The blood brain barrier (BBB) is an endothelial-derived structure which restricts the movement of certain molecules between the general somatic circulatory system to the central nervous system (CNS). While the BBB maintains homeostasis by regulating the molecular environment induced by cerebrovascular perfusion, it also presents significant challenges in developing therapeutics intended to act on CNS targets. Many drug development practices rely partly on extensive cell and animal models to predict, to an extent, whether prospective therapeutic molecules can cross the BBB. In interest to reduce costs and improve prediction accuracy, many propose using advanced computational modeling of BBB permeability profiles leveraging empirical data. Given the scale of growth in machine learning and deep learning, we review the most recent machine learning approaches in predicting BBB permeability.
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Affiliation(s)
- Aryon Eckleel Nabi
- Harvard Medical SchoolDepartment of EpidemiologyHarvard T.H. Chan School of Public HealthBoston, MAUSA
| | - Pedram Pouladvand
- Department of EpidemiologyHarvard Chan School of Public HealthBoston, MAUSA
| | - Litian Liu
- Boonshoft School of MedicineWright State UniversityDayton, OHUSA
| | - Ning Hua
- Department of Electrical Engineering and Computer ScienceMassachusetts Institute of TechnologyBoston, MAUSA
| | - Cyrus Ayubcha
- Harvard Medical SchoolDepartment of EpidemiologyHarvard T.H. Chan School of Public HealthBoston, MAUSA
- Department of Electrical Engineering and Computer ScienceMassachusetts Institute of TechnologyBoston, MAUSA
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Kokori E, Patel R, Olatunji G, Ukoaka BM, Abraham IC, Ajekiigbe VO, Kwape JM, Babalola AE, Udam NG, Aderinto N. Machine learning in predicting heart failure survival: a review of current models and future prospects. Heart Fail Rev 2025; 30:431-442. [PMID: 39656330 DOI: 10.1007/s10741-024-10474-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 12/04/2024] [Indexed: 02/07/2025]
Abstract
Heart failure is a complex and prevalent condition with significant implications for patient management and survival prediction. Traditional predictive models often fall short in accuracy due to their reliance on pre-specified predictors and assumptions of variable independence. This review aims to assess the role of machine learning (ML) algorithms in predicting heart failure survival, comparing their performance with traditional statistical methods and identifying key predictive features. We conducted a review of studies utilizing ML algorithms for heart failure survival prediction. Data were sourced from PubMed/MEDLINE, Google Scholar, ScienceDirect, Embase, DOAJ, and the Cochrane Library, covering studies published until July 2024. A total of 10 studies were reviewed, encompassing 468,171 patients with heart failure. ML algorithms, particularly random forests and gradient boosting methods, demonstrated superior performance compared to traditional statistical models. These algorithms effectively identified key risk factors and stratified patients into risk categories with high accuracy. Notably, extreme learning machine (ELM) and CatBoost models showed exceptional predictive capabilities, as indicated by metrics such as Harrell's concordance index (C-index) and area under the curve (AUC). Key predictive features included ejection fraction (EF), serum creatinine (S Cr), and blood urea nitrogen (BUN). ML algorithms offer significant advantages in predicting heart failure survival by uncovering complex patterns and improving risk stratification. Their integration into clinical practice could lead to more personalized treatment strategies and enhanced patient outcomes. However, challenges such as data quality, model interpretability, and integration into clinical workflows need to be addressed.
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Affiliation(s)
- Emmanuel Kokori
- Department of Medicine and Surgery, University of Ilorin, Ilorin, Nigeria
| | - Ravi Patel
- Department of Internal Medicine, Methodist Health System Dallas, Dallas, TX, USA
| | - Gbolahan Olatunji
- Department of Medicine and Surgery, University of Ilorin, Ilorin, Nigeria
| | | | | | | | | | | | | | - Nicholas Aderinto
- Department of Medicine and Surgery, Ladoke Akintola University of Technology, Ogbomoso, Nigeria.
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Tan F, Dong Y, Qi J, Yu W, Chai R. Artificial Intelligence-Based Approaches for AAV Vector Engineering. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2025; 12:e2411062. [PMID: 39932449 PMCID: PMC11884542 DOI: 10.1002/advs.202411062] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/10/2024] [Revised: 12/31/2024] [Indexed: 03/08/2025]
Abstract
Adeno-associated virus (AAV) has emerged as a leading vector for gene therapy due to its broad host range, low pathogenicity, and ability to facilitate long-term gene expression. However, AAV vectors face limitations, including immunogenicity and insufficient targeting specificity. To enhance the efficacy of gene therapy, researchers have been modifying the AAV vector using various methods. Traditional experimental approaches for optimizing AAV vector are often time-consuming, resource-intensive, and difficult to replicate. The advancement of artificial intelligence (AI), particularly machine learning, offers significant potential to accelerate capsid optimization while reducing development time and manufacturing costs. This review compares traditional and AI-based methods of AAV vector engineering and highlights recent research in AAV engineering using AI algorithms.
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Affiliation(s)
- Fangzhi Tan
- State Key Laboratory of Digital Medical EngineeringDepartment of Otolaryngology Head and Neck SurgeryZhongda HospitalSchool of Life Sciences and TechnologySchool of MedicineAdvanced Institute for Life and HealthJiangsu Province High‐Tech Key Laboratory for Bio‐Medical ResearchSoutheast UniversityNanjing210096China
| | - Yue Dong
- Immunowake, Inc.Shanghai201210China
| | - Jieyu Qi
- Department of NeurologyAerospace Center HospitalSchool of Life ScienceBeijing Institute of TechnologyBeijing100081China
- State Key Laboratory of Hearing and Balance ScienceBeijing Institute of TechnologyBeijing100081China
- School of Medical EngineeringAffiliated Zhuhai People's HospitalBeijing Institute of TechnologyZhuhai519088China
- Advanced Technology Research InstituteBeijing Institute of TechnologyJinan250300China
| | - Wenwu Yu
- School of MathematicsSoutheast UniversityNanjing210096China
| | - Renjie Chai
- State Key Laboratory of Digital Medical EngineeringDepartment of Otolaryngology Head and Neck SurgeryZhongda HospitalSchool of Life Sciences and TechnologySchool of MedicineAdvanced Institute for Life and HealthJiangsu Province High‐Tech Key Laboratory for Bio‐Medical ResearchSoutheast UniversityNanjing210096China
- Department of NeurologyAerospace Center HospitalSchool of Life ScienceBeijing Institute of TechnologyBeijing100081China
- Co‐Innovation Center of NeuroregenerationNantong UniversityNantong226001China
- Department of Otolaryngology Head and Neck SurgerySichuan Provincial People's HospitalSchool of MedicineUniversity of Electronic Science and Technology of ChinaChengdu610072China
- Southeast University Shenzhen Research InstituteShenzhen518063China
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Hilberink L, Wehage P, Pashai Fakhri M, Gaedcke S, DeLuca D, Mattis P, Rademacher J. [Artificial intelligence and machine learning in auscultation: prospects of the project DigitaLung]. Pneumologie 2025; 79:229-235. [PMID: 39961349 DOI: 10.1055/a-2507-1486] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/12/2025]
Abstract
Auscultation is one of the key medical skills in physical examination. The main problem with auscultation is the lack of objectivity of the findings and great dependence on the experience of the examiner. Auscultation using machine learning and neural networks promises great potential for solving these problems in clinical practice.A selective search for studies in PubMed was carried out, which revealed the possibilities of machine learning in medical diagnostics.In all the studies identified, significant differences were shown between the respective test groups in favour of artificial intelligence (AI). In addition to the positive study results, the limitations of AI could also be analysed and critically scrutinised.Medical research in the field of artificial intelligence is still in its infancy. The prospects and limitations of AI must be further investigated and require close attention in the collaboration between clinicians, scientists and AI experts. Publicly funded projects such as DigitaLung (a digital auscultation system for the differential diagnosis of lung diseases using machine learning), which aims to improve lung auscultation using AI, will help to unlock the diagnostic benefits of AI for patient care and could improve care in the future.
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Affiliation(s)
- Luca Hilberink
- Respiratory Medicine and Infectious Diseases, Hannover Medical School, Hannover, Deutschland
| | - Pia Wehage
- Respiratory Medicine and Infectious Diseases, Hannover Medical School, Hannover, Deutschland
| | - Milad Pashai Fakhri
- Respiratory Medicine and Infectious Diseases, Hannover Medical School, Hannover, Deutschland
| | - Svenja Gaedcke
- Biomedical Research in Endstage and Obstructive Lung Disease Hannover (BREATH), German Center for Lung Research (DZL), Hannover Medical School, Hannover, Deutschland
| | - David DeLuca
- Biomedical Research in Endstage and Obstructive Lung Disease Hannover (BREATH), German Center for Lung Research (DZL), Hannover Medical School, Hannover, Deutschland
| | - Patricia Mattis
- Business Development Manager, Translational Biomedical Engineering, Fraunhofer Institute for Toxicology and Experimental Medicine ITEM, Hannover, Deutschland
| | - Jessica Rademacher
- Respiratory Medicine and Infectious Diseases, Hannover Medical School, Hannover, Deutschland
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Nakashima M, Fukui R, Sugimoto S, Iguchi T. Deep learning-based approach for acquisition time reduction in ventilation SPECT in patients after lung transplantation. Radiol Phys Technol 2025; 18:47-57. [PMID: 39441494 DOI: 10.1007/s12194-024-00853-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2024] [Revised: 10/15/2024] [Accepted: 10/16/2024] [Indexed: 10/25/2024]
Abstract
We aimed to evaluate the image quality and diagnostic performance of chronic lung allograft dysfunction (CLAD) with lung ventilation single-photon emission computed tomography (SPECT) images acquired briefly using a convolutional neural network (CNN) in patients after lung transplantation and to explore the feasibility of short acquisition times. We retrospectively identified 93 consecutive lung-transplant recipients who underwent ventilation SPECT/computed tomography (CT). We employed a CNN to distinguish the images acquired in full time from those acquired in a short time. The image quality was evaluated using the structural similarity index (SSIM) loss and normalized mean square error (NMSE). The correlation between functional volume/morphological volume (F/M) ratios of full-time SPECT images and predicted SPECT images was evaluated. Differences in the F/M ratio were evaluated using Bland-Altman plots, and the diagnostic performance was compared using the area under the curve (AUC). The learning curve, obtained using MSE, converged within 100 epochs. The NMSE was significantly lower (P < 0.001) and the SSIM was significantly higher (P < 0.001) for the CNN-predicted SPECT images compared to the short-time SPECT images. The F/M ratio of full-time SPECT images and predicted SPECT images showed a significant correlation (r = 0.955, P < 0.0001). The Bland-Altman plot revealed a bias of -7.90% in the F/M ratio. The AUC values were 0.942 for full-time SPECT images, 0.934 for predicted SPECT images and 0.872 for short-time SPECT images. Our findings suggest that a deep-learning-based approach can significantly curtail the acquisition time of ventilation SPECT, while preserving the image quality and diagnostic accuracy for CLAD.
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Affiliation(s)
- Masahiro Nakashima
- Division of Radiological Technology, Okayama University Hospital, 2-5-1 Shikatacho, Kitaku, Okayama, 700-8558, Japan.
| | - Ryohei Fukui
- Department of Radiological Technology, Faculty of Health Sciences, Okayama University, 2-5-1 Shikatacho, Kitaku, Okayama, 700-8558, Japan
| | - Seiichiro Sugimoto
- Department of General Thoracic Surgery and Breast and Endocrinological Surgery, Dentistry and Pharmaceutical Sciences, Okayama University Graduate School of Medicine, 2-5-1 Shikatacho, Kitaku, Okayama, 700-8558, Japan
| | - Toshihiro Iguchi
- Department of Radiological Technology, Faculty of Health Sciences, Okayama University, 2-5-1 Shikatacho, Kitaku, Okayama, 700-8558, Japan
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Zhuo Z, Zhang N, Ao F, Hua T, Duan Y, Xu X, Weng J, Cao G, Li K, Zhou F, Li H, Li Y, Han X, Haller S, Barkhof F, Hu G, Shi F, Zhang X, Tian D, Liu Y. Spatial structural abnormality maps associated with cognitive and physical performance in relapsing-remitting multiple sclerosis. Eur Radiol 2025; 35:1228-1241. [PMID: 39470796 DOI: 10.1007/s00330-024-11157-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2024] [Revised: 07/21/2024] [Accepted: 09/02/2024] [Indexed: 11/01/2024]
Abstract
OBJECTIVES We aimed to characterize the brain abnormalities that are associated with the cognitive and physical performance of patients with relapsing-remitting multiple sclerosis (RRMS) using a deep learning algorithm. MATERIALS AND METHODS Three-dimensional (3D) nnU-Net was employed to calculate a novel spatial abnormality map by T1-weighted images and 281 RRMS patients (Dataset-1, male/female = 101/180, median age [range] = 35.0 [17.0, 65.0] years) were categorized into subtypes. Comparison of clinical and MRI features between RRMS subtypes was conducted by Kruskal-Wallis test. Kaplan-Meier analysis was conducted to investigate disability progression in RRMS subtypes. Additional validation using two other RRMS datasets (Dataset-2, n = 33 and Dataset-3, n = 56) was conducted. RESULTS Five RRMS subtypes were identified: (1) a Frontal-I subtype showing preserved cognitive performance and mild physical disability, and low risk of disability worsening; (2) a Frontal-II subtype showing low cognitive scores and severe physical disability with significant brain volume loss, and a high propensity for disability worsening; (3) a temporal-cerebellar subtype demonstrating lowest cognitive scores and severest physical disability among all subtypes but remaining relatively stable during follow-up; (4) an occipital subtype demonstrating similar clinical and imaging characteristics as the Frontal-II subtype, except a large number of relapses at baseline and preserved cognitive performance; and (5) a subcortical subtype showing preserved cognitive performance and low physical disability but a similar prognosis as the occipital and Frontal-II subtypes. Additional validation confirmed the above findings. CONCLUSION Spatial abnormality maps can explain heterogeneity in cognitive and physical performance in RRMS and may contribute to stratified management. KEY POINTS Question Can a deep learning algorithm characterize the brain abnormalities associated with the cognitive and physical performance of patients with RRMS? Findings Five RRMS subtypes were identified by the algorithm that demonstrated variable cognitive and physical performance. Clinical relevance The spatial abnormality maps derived RRMS subtypes had distinct cognitive and physical performances, which have a potential for individually tailored management.
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Affiliation(s)
- Zhizheng Zhuo
- Department of Radiology, Beijing Tiantan Hospital, Capital Medical University, Beijing, China.
| | - Ningnannan Zhang
- Department of Radiology and Tianjin Key Laboratory of Functional Imaging, Tianjin Medical University General Hospital, Tianjin, China
| | - Feng Ao
- Department of Radiology, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
- Department of Radiology, Renmin Hospital, Hubei University of Medicine, Shiyan, China
| | - Tiantian Hua
- Department of Radiology, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
| | - Yunyun Duan
- Department of Radiology, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
| | - Xiaolu Xu
- Department of Radiology, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
| | - Jinyuan Weng
- Department of Medical Imaging Product, Neusoft Group Ltd., Shenyang, People's Republic of China
| | - Guanmei Cao
- Department of Radiology, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
| | - Kuncheng Li
- Department of Radiology, Xuanwu Hospital, Capital Medical University, Beijing, China
| | - Fuqing Zhou
- Department of Radiology, The First Affiliated Hospital, Nanchang University, Nanchang, China
| | - Haiqing Li
- Department of Radiology, Huashan Hospital, Fudan University, Shanghai, China
| | - Yongmei Li
- Department of Radiology, The First Affiliated Hospital of Chongqing Medical University, Chongqing, China
| | - Xuemei Han
- Department of Neurology, China-Japan Union Hospital of Jilin University, Changchun, China
| | - Sven Haller
- Department of Imaging and Medical Informatics, University Hospitals of Geneva and Faculty of Medicine of the University of Geneva, Geneva, Switzerland
| | - Frederik Barkhof
- Department of Radiology and Nuclear Medicine, Amsterdam, The Netherlands
- Queen Square Institute of Neurology and Center for Medical Image Computing, University College London, London, UK
| | - Geli Hu
- Clinical and Technical Support, Philips Healthcare, Beijing, China
| | - Fudong Shi
- China National Clinical Research Center for Neurological Diseases, Beijing, China
- Department of Neurology, Tianjin Neurological Institute, Tianjin Medical University General Hospital, Tianjin, China
| | - Xinghu Zhang
- Center for Neurology, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
| | - Decai Tian
- Center for Neurology, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
| | - Yaou Liu
- Department of Radiology, Beijing Tiantan Hospital, Capital Medical University, Beijing, China.
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Guo Y, Wang F, Ma S, Mao Z, Zhao S, Sui L, Jiao C, Lu R, Zhu X, Pan X. Relationship between atherogenic index of plasma and length of stay in critically ill patients with atherosclerotic cardiovascular disease: a retrospective cohort study and predictive modeling based on machine learning. Cardiovasc Diabetol 2025; 24:95. [PMID: 40022165 PMCID: PMC11871731 DOI: 10.1186/s12933-025-02654-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/13/2025] [Accepted: 02/18/2025] [Indexed: 03/03/2025] Open
Abstract
BACKGROUND The atherogenic index of plasma (AIP) is considered an important marker of atherosclerosis and cardiovascular risk. However, its potential role in predicting length of stay (LOS), especially in patients with atherosclerotic cardiovascular disease (ASCVD), remains to be explored. We investigated the effect of AIP on hospital LOS in critically ill ASCVD patients and explored the risk factors affecting LOS in conjunction with machine learning. METHODS Using data from the Medical Information Mart for Intensive Care (MIMIC)-IV. AIP was calculated as the logarithmic ratio of TG to HDL-C, and patients were stratified into four groups based on AIP values. We investigated the association between AIP and two key clinical outcomes: ICU LOS and total hospital LOS. Multivariate logistic regression models were used to evaluate these associations, while restricted cubic spline (RCS) regressions assessed potential nonlinear relationships. Additionally, machine learning (ML) techniques, including logistic regression (LR), decision tree (DT), random forest (RF), extreme gradient boosting (XGB), and light gradient boosting machine (LGB), were applied, with the Shapley additive explanation (SHAP) method used to determine feature importance. RESULTS The study enrolled a total of 2423 patients with critically ill ASCVD, predominantly male (54.91%), and revealed that higher AIP values were independently associated with longer ICU and hospital stays. Specifically, for each unit increase in AIP, the odds of prolonged ICU and hospital stays were significantly higher, with adjusted odds ratios (OR) of 1.42 (95% CI, 1.11-1.81; P = 0.006) and 1.73 (95% CI, 1.34-2.24; P < 0.001), respectively. The RCS regression demonstrated a linear relationship between increasing AIP and both ICU LOS and hospital LOS. ML models, specifically LGB (ROC:0.740) and LR (ROC:0.832) demonstrated superior predictive accuracy for these endpoints, identifying AIP as a vital component of hospitalization duration. CONCLUSION AIP is a significant predictor of ICU and hospital LOS in patients with critically ill ASCVD. AIP could serve as an early prognostic tool for guiding clinical decision-making and managing patient outcomes.
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Affiliation(s)
- Yu Guo
- Department of Neurology, The Affiliated Hospital of Qingdao University, Qingdao, China
| | - Fuxu Wang
- Department of Critical Care Medicine, The Affiliated Hospital of Qingdao University, Qingdao, China
| | - Shiyin Ma
- Department of Neurology, The Affiliated Hospital of Qingdao University, Qingdao, China
| | - Zhi Mao
- Department of Critical Care Medicine, The First Medical Center of PLA General Hospital, Beijing, China
| | - Shuangmei Zhao
- Department of Critical Care Medicine, The Affiliated Hospital of Qingdao University, Qingdao, China
| | - Liutao Sui
- Department of Critical Care Medicine, The Affiliated Hospital of Qingdao University, Qingdao, China
| | - Chucheng Jiao
- Department of Critical Care Medicine, The Affiliated Hospital of Qingdao University, Qingdao, China
| | - Ruogu Lu
- Medical Innovation Research Department, Chinese PLA General Hospital, Beijing, China.
| | - Xiaoyan Zhu
- Department of Critical Care Medicine, The Affiliated Hospital of Qingdao University, Qingdao, China.
| | - Xudong Pan
- Department of Neurology, The Affiliated Hospital of Qingdao University, Qingdao, China.
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Nie F, Pei X, Du J, Shi W, Wang J, Feng L, Liu Y. Multiomics-Based Deep Learning Prediction of Prognosis and Therapeutic Response in Patients With Extensive-Stage Small Cell Lung Cancer Receiving Chemoimmunotherapy: A Retrospective Cohort Study. Int J Gen Med 2025; 18:981-996. [PMID: 40026810 PMCID: PMC11869764 DOI: 10.2147/ijgm.s506485] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2024] [Accepted: 02/04/2025] [Indexed: 03/05/2025] Open
Abstract
Objective This study aimed to develop a clinical early warning prediction model to evaluate the prognosis and response to chemoimmunotherapy in patients with extensive-stage small cell lung cancer (ES-SCLC), thereby guiding clinical decision-making. Methods A retrospective analysis was conducted on the clinical data and radiomics parameters of 309 patients with ES-SCLC hospitalized at Baotou Cancer Hospital from February 2020 to September 2024. Patients were divided into reactive and non-reactive groups based on their response to chemoimmunotherapy.Machine learning algorithms (including random forests, decision trees, artificial neural networks, and generalized linear regression) were used to predict the combined treatment response. The model's predictive ability was evaluated using the receiver operating characteristic (ROC) curve and clinical decision curve analysis(DCA). The prognostic evaluation of patients receiving combination therapy was based on the COX regression model, with predictive performance assessed through nomogram visualization and calibration curves. Results Out of 309 patients with ES-SCLC, 248 (80.26%) responded to combination therapy. Logistic regression and Least absolute shrinkage and selection operator (LASSO) regression analyses identified Energy, sum of squares(SOS), mean sum(MES), sum variance(SUV), sum entropy(SUE), difference variance(DIV), and pathomics score as independent risk factors for treatment response. The area under the ROC curve for predicting treatment response using machine learning were 0.764 (95% confidence interval [CI]: 0.707~0.821) and 0.901 (95% CI: 0.846~0.956) in the training and validation sets. The C-index of the radiomics and pathomics prognostic nomogram model based on the COX prognostic model was 0.766 and 0.812 in those sets, respectively. Conclusion We developed prediction model based on multi-omics demonstrated satisfactory performance in predicting chemoimmunotherapy response in patients with ES-SCLC. The random forest prediction model, in particular, provides accurate response and prognostic risk assessments, thereby assisting clinical decision-making.
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Affiliation(s)
- Fang Nie
- Department of Thoracic Oncology, Baotou Cancer Hospital, Baotou, Inner Mongolia, 014000, People’s Republic of China
| | - Xiufeng Pei
- Department of Thoracic Oncology, Baotou Cancer Hospital, Baotou, Inner Mongolia, 014000, People’s Republic of China
| | - Jiale Du
- Department of Thoracic Oncology, Baotou Cancer Hospital, Baotou, Inner Mongolia, 014000, People’s Republic of China
| | - Wanting Shi
- Department of Thoracic Oncology, Baotou Cancer Hospital, Baotou, Inner Mongolia, 014000, People’s Republic of China
| | - Jianying Wang
- Department of Thoracic Oncology, Baotou Cancer Hospital, Baotou, Inner Mongolia, 014000, People’s Republic of China
| | - Lu Feng
- Department of Thoracic Oncology, Baotou Cancer Hospital, Baotou, Inner Mongolia, 014000, People’s Republic of China
| | - Yonggang Liu
- Department of Thoracic Oncology, Baotou Cancer Hospital, Baotou, Inner Mongolia, 014000, People’s Republic of China
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Maragno E, Ricchizzi S, Winter NR, Hellwig SJ, Stummer W, Hahn T, Holling M. Predictive modeling with linear machine learning can estimate glioblastoma survival in months based solely on MGMT-methylation status, age and sex. Acta Neurochir (Wien) 2025; 167:52. [PMID: 39992425 PMCID: PMC11850473 DOI: 10.1007/s00701-025-06441-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2024] [Accepted: 01/21/2025] [Indexed: 02/25/2025]
Abstract
PURPOSE Machine Learning (ML) has become an essential tool for analyzing biomedical data, facilitating the prediction of treatment outcomes and patient survival. However, the effectiveness of ML models heavily relies on both the choice of algorithms and the quality of the input data. In this study, we aimed to develop a novel predictive model to estimate individual survival for patients diagnosed with glioblastoma (GBM), focusing on key variables such as O6-Methylguanine-DNA Methyltransferase (MGMT) methylation status, age, and sex. METHODS To identify the optimal approach, we utilized retrospective data from 218 patients treated at our brain tumor center. The performance of the ML models was evaluated within repeated tenfold regression. The pipeline comprised five regression estimators, including both linear and non-linear algorithms. Permutation feature importance highlighted the feature with the most significant impact on the model. Statistical significance was assessed using a permutation test procedure. RESULTS The best machine learning algorithm achieved a mean absolute error (MAE) of 12.65 (SD = ± 2.18) and an explained variance (EV) of 7% (SD = ± 1.8%) with p < 0.001. Linear algorithms led to more accurate predictions than non-linear estimators. Feature importance testing indicated that age and positive MGMT-methylation influenced the predictions the most. CONCLUSION In summary, here we provide a novel approach allowing to predict GBM patient's survival in months solely based on key parameters such as age, sex and MGMT-methylation status and underscores MGMT-methylation status as key prognostic factor for GBM patients survival.
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Affiliation(s)
- Emanuele Maragno
- Department of Neurosurgery, University Hospital Münster, Albert-Schweitzer-Campus 1A, 48149, Münster, Germany
| | - Sarah Ricchizzi
- Department of Neurosurgery, University Hospital Münster, Albert-Schweitzer-Campus 1A, 48149, Münster, Germany
- Institute for Translational Psychiatry, University of Münster, Münster, Germany
| | - Nils Ralf Winter
- Institute for Translational Psychiatry, University of Münster, Münster, Germany
| | - Sönke Josua Hellwig
- Department of Neurosurgery, University Hospital Münster, Albert-Schweitzer-Campus 1A, 48149, Münster, Germany
| | - Walter Stummer
- Department of Neurosurgery, University Hospital Münster, Albert-Schweitzer-Campus 1A, 48149, Münster, Germany
| | - Tim Hahn
- Institute for Translational Psychiatry, University of Münster, Münster, Germany
| | - Markus Holling
- Department of Neurosurgery, University Hospital Münster, Albert-Schweitzer-Campus 1A, 48149, Münster, Germany.
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Liu Z, Zuo B, Lin J, Sun Z, Hu H, Yin Y, Yang S. Breaking new ground: machine learning enhances survival forecasts in hypercapnic respiratory failure. Front Med (Lausanne) 2025; 12:1497651. [PMID: 40051730 PMCID: PMC11882423 DOI: 10.3389/fmed.2025.1497651] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2024] [Accepted: 01/30/2025] [Indexed: 03/09/2025] Open
Abstract
Background The prognostic prediction of patients with hypercapnic respiratory failure holds significant clinical value. The objective of this study was to develop and validate a predictive model for predicting survival in patients with hypercapnic respiratory failure. Methods The study enrolled a total of 697 patients with hypercapnic respiratory failure, including 565 patients from the First People's Hospital of Yancheng in the modeling group and 132 patients from the People's Hospital of Jiangsu Province in the external validation group. The three selected models were random survival forest (RSF), DeepSurv, a deep learning-based survival prediction algorithm, and Cox Proportional Risk (CoxPH). The model's predictive performance was evaluated using the C-index and Brier score. Receiver operating characteristic curve (ROC), area under ROC curve (AUC), and decision curve analysis (DCA) were employed to assess the accuracy of predicting the prognosis for survival at 6, 12, 18, and 24 months. Results The RSF model (c-index: 0.792) demonstrated superior predictive ability for the prognosis of patients with hypercapnic respiratory failure compared to both the traditional CoxPH model (c-index: 0.699) and DeepSurv model (c-index: 0.618), which was further validated on external datasets. The Brier Score of the RSF model demonstrated superior performance, consistently measuring below 0.25 at the 6-month, 12-month, 18-month, and 24-month intervals. The ROC curve confirmed the superior discrimination of the RSF model, while DCA demonstrated its optimal clinical net benefit in both the modeling group and the external validation group. Conclusion The RSF model offered distinct advantages over the CoxPH and DeepSurv models in terms of clinical evaluation and monitoring of patients with hypercapnic respiratory failure.
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Affiliation(s)
- Zhongxiang Liu
- Department of Respiratory and Critical Care Medicine, The Second Affiliated Hospital of Xi’an Jiaotong University, Xi’an, Shanxi, China
- Department of Respiratory and Critical Care Medicine, The Yancheng Clinical College of Xuzhou Medical University, The First People’s Hospital of Yancheng, Yancheng, China
| | - Bingqing Zuo
- Department of Respiratory and Critical Care Medicine, The Yancheng Clinical College of Xuzhou Medical University, The First People’s Hospital of Yancheng, Yancheng, China
| | - Jianyang Lin
- Disease Prevention and Control Center of Funing County, Yancheng, China
| | - Zhixiao Sun
- Department of Respiratory and Critical Care Medicine, The Yancheng Clinical College of Xuzhou Medical University, The First People’s Hospital of Yancheng, Yancheng, China
| | - Hang Hu
- Department of Respiratory and Critical Care Medicine, The Yancheng Clinical College of Xuzhou Medical University, The First People’s Hospital of Yancheng, Yancheng, China
| | - Yuan Yin
- Department of Respiratory and Critical Care Medicine, The First Affiliated Hospital of Nanjing Medical University, The People’s Hospital of Jiangsu Province, Nanjing, China
| | - Shuanying Yang
- Department of Respiratory and Critical Care Medicine, The Second Affiliated Hospital of Xi’an Jiaotong University, Xi’an, Shanxi, China
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Tian Z, Zhang J, Fan Y, Sun X, Wang D, Liu X, Lu G, Wang H. Diabetic peripheral neuropathy detection of type 2 diabetes using machine learning from TCM features: a cross-sectional study. BMC Med Inform Decis Mak 2025; 25:90. [PMID: 39966886 PMCID: PMC11837659 DOI: 10.1186/s12911-025-02932-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2024] [Accepted: 02/11/2025] [Indexed: 02/20/2025] Open
Abstract
AIMS Diabetic peripheral neuropathy (DPN) is the most common complication of diabetes mellitus. Early identification of individuals at high risk of DPN is essential for successful early intervention. Traditional Chinese medicine (TCM) tongue diagnosis, one of the four diagnostic methods, lacks specific algorithms for TCM symptoms and tongue features. This study aims to develop machine learning (ML) models based on TCM to predict the risk of diabetic peripheral neuropathy (DPN) in patients with type 2 diabetes mellitus (T2DM). METHODS A total of 4723 patients were included in the analysis (4430 with T2DM and 293 with DPN). TFDA-1 was used to obtain tongue images during a questionnaire survey. LASSO (least absolute shrinkage and selection operator) logistic regression model with fivefold cross-validation was used to select imaging features, which were then screened using best subset selection. The synthetic minority oversampling technique (SMOTE) algorithm was applied to address the class imbalance and eliminate possible bias. The area under the receiver operating characteristic curve (AUC) was used to evaluate the model's performance. Four ML algorithms, namely logistic regression (LR), random forest (RF), support vector classifier (SVC), and light gradient boosting machine (LGBM), were used to build predictive models for DPN. The importance of covariates in DPN was ranked using classifiers with better performance. RESULTS The RF model performed the best, with an accuracy of 0.767, precision of 0.718, recall of 0.874, F-1 score of 0.789, and AUC of 0.77. With a value of 0.879, the LGBM model appeared to be the best regarding recall Age, sweating, dark red tongue, insomnia, and smoking were the five most significant RF features. Age, yellow coating, loose teeth, smoking, and insomnia were the five most significant features of the LGBM model. CONCLUSIONS This cross-sectional study demonstrates that the RF and LGBM models can screen for high-risk DPN in T2DM patients using TCM symptoms and tongue features. The identified key TCM-related features, such as age, tongue coating, and other symptoms, may be advantageous in developing preventative measures for T2DM patients.
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Affiliation(s)
- Zhikui Tian
- School of Rehabilitation Medicine, Qilu Medical University, Shandong, 255300, China
| | - JiZhong Zhang
- School of Rehabilitation Medicine, Qilu Medical University, Shandong, 255300, China
| | - Yadong Fan
- Medical College of Yangzhou University, YangZhou, 225000, China
| | - Xuan Sun
- College of Traditional Chinese Medicine, Binzhou Medical University, Shandong, China
| | - Dongjun Wang
- College of Traditional Chinese Medicine, North China University of Science and Technology, Tangshan, 063000, China
| | - XiaoFei Liu
- School of Rehabilitation Medicine, Qilu Medical University, Shandong, 255300, China
| | - GuoHui Lu
- School of Rehabilitation Medicine, Qilu Medical University, Shandong, 255300, China.
| | - Hongwu Wang
- School of Health Sciences and Engineering, Tianjin University of Traditional Chinese Medicine, Tianjin, 301617, China.
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Wang F, Mao Y, Sun J, Yang J, Xiao L, Huang Q, Wei C, Gou Z, Zhang K. Models based on dietary nutrients predicting all-cause and cardiovascular mortality in people with diabetes. Sci Rep 2025; 15:4600. [PMID: 39920222 PMCID: PMC11805981 DOI: 10.1038/s41598-025-88480-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2024] [Accepted: 01/28/2025] [Indexed: 02/09/2025] Open
Abstract
Dietary intervention plays a vital role in improving the prognosis of people with diabetes mellitus (DM). Currently, there is a lack of systematic analysis of the relation between dietary nutrients and long-term mortality risk in people with DM. The study aims to establish models predicting long-term mortality and explore dietary nutrients associated with reduced long-term events to guide daily dietary decisions in people with DM. The retrospective cohort study collected 5060 participants with DM from the National Health and Nutrition Examination Survey (NHANES) 1999-2018. The least absolute shrinkage and selection operator (LASSO) regression and random forest (RF) algorithm were applied to identify key mortality-related dietary factors, which were subsequently incorporated into risk prediction nomogram models. The receiver operating characteristic (ROC) curve, calibration plot and decision curve analysis (DCA) were utilized to evaluate the performance of the models. The association of key dietary nutrients with all-cause and cardiovascular mortality were visualized by restricted cubic spline (RCS) models both in the whole and subgroups by sex, age, drinking and smoking status. The overall median age of the cohort was 62.0 years (interquartile range (IQR) 52.0-70.0), 2564 (50.67%) being male. During a median follow-up period of 56.0 months, 997 (19.70%) all-cause deaths were recorded, with 219 (21.97%) of which being ascribed to cardiovascular disease. The nomogram models based on key dietary nutrients identified by LASSO and RF demonstrated a significant predicative value for all-cause and cardiovascular mortality. Dietary fiber and magnesium were the common predictive nutrients in the two nomogram models. The RCS curve revealed that dietary fiber and magnesium were negatively associated with long-term mortality in the whole and subgroups of people with DM after adjustment of potential confounders. The diet of people with DM is closely associated with mortality. The nomogram models based on dietary nutrients can predict long-term mortality of people with DM, and the higher intake of dietary fiber and magnesium was associated with reduced risks of both long-term all-cause and cardiovascular mortality.
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Affiliation(s)
- Fang Wang
- Center for Cardiovascular Disease, The Affiliated Suzhou Hospital of Nanjing Medical University, Suzhou Municipal Hospital, Gusu School, Nanjing Medical University, 242# Guangji Road, Suzhou, 215000, Jiangsu, China
| | - Yukang Mao
- Center for Cardiovascular Disease, The Affiliated Suzhou Hospital of Nanjing Medical University, Suzhou Municipal Hospital, Gusu School, Nanjing Medical University, 242# Guangji Road, Suzhou, 215000, Jiangsu, China
| | - Jinyu Sun
- Center for Cardiovascular Disease, The Affiliated Suzhou Hospital of Nanjing Medical University, Suzhou Municipal Hospital, Gusu School, Nanjing Medical University, 242# Guangji Road, Suzhou, 215000, Jiangsu, China
| | - Jiaming Yang
- Department of Cardiology, The First Affiliated Hospital of Nanjing Medical University, Nanjing Medical University, Nanjing, 210000, Jiangsu, China
| | - Li Xiao
- Center for Cardiovascular Disease, The Affiliated Suzhou Hospital of Nanjing Medical University, Suzhou Municipal Hospital, Gusu School, Nanjing Medical University, 242# Guangji Road, Suzhou, 215000, Jiangsu, China
| | - Qingxia Huang
- Center for Cardiovascular Disease, The Affiliated Suzhou Hospital of Nanjing Medical University, Suzhou Municipal Hospital, Gusu School, Nanjing Medical University, 242# Guangji Road, Suzhou, 215000, Jiangsu, China
| | - Chenchen Wei
- Center for Cardiovascular Disease, The Affiliated Suzhou Hospital of Nanjing Medical University, Suzhou Municipal Hospital, Gusu School, Nanjing Medical University, 242# Guangji Road, Suzhou, 215000, Jiangsu, China
| | - Zhongshan Gou
- Center for Cardiovascular Disease, The Affiliated Suzhou Hospital of Nanjing Medical University, Suzhou Municipal Hospital, Gusu School, Nanjing Medical University, 242# Guangji Road, Suzhou, 215000, Jiangsu, China.
| | - Kerui Zhang
- Center for Cardiovascular Disease, The Affiliated Suzhou Hospital of Nanjing Medical University, Suzhou Municipal Hospital, Gusu School, Nanjing Medical University, 242# Guangji Road, Suzhou, 215000, Jiangsu, China.
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Dube AR, Ambrose AJH, Velez G, Jadhav M. Real concerns, artificial intelligence: Reality testing for psychiatrists. Int Rev Psychiatry 2025; 37:33-38. [PMID: 40035377 DOI: 10.1080/09540261.2024.2363374] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/25/2024] [Accepted: 05/29/2024] [Indexed: 03/05/2025]
Abstract
The use of augmented or artificial intelligence (AI) in healthcare promises groundbreaking advancements, from increasing diagnostic accuracy and minimizing clinical errors to personalized treatment plans and automated clinical decision-making. Its use may allow us to transition from phenomenological categories of psychiatric illness to one driven by underlying etiology and realize the Research Domain Criteria (RDoC) model proposed by the (U.S.) National Institutes of Mental Health (NIMH), which today remains difficult to apply clinically and is accessible primarily to researchers. AI may facilitate the transition to a more syncretic framework of understanding psychiatric illness that accounts for disruptions, all the way from the cellular level to the level of social systems. Yet, despite immense possibilities, there are also associated risks. In this article, we explore the challenges and opportunities associated with the use of AI in psychiatry, focusing on the potential ethical and health equity considerations in vulnerable populations, especially in child and adolescent psychiatry.
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Affiliation(s)
- Anish R Dube
- Riverside University Health System/Loma Linda University, Moreno Valley, CA, USA
| | - Adrian Jacques H Ambrose
- Department of Psychiatry, Columbia University Irving Medical Center, Vagelos College of Physicians & Surgeons, New York City, NY, USA
| | - German Velez
- Weill Cornell Medicine, The Columbia College of Physicians and Surgeons, New York City, NY, USA
| | - Mandar Jadhav
- National Association of Community Health Centers, Bethesda, MD, USA
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Faheem F, Haq M, Derhab M, Saeed R, Ahmad U, Kalia JS. Integrating Ethical Principles Into the Regulation of AI-Driven Medical Software. Cureus 2025; 17:e79506. [PMID: 40135040 PMCID: PMC11936099 DOI: 10.7759/cureus.79506] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/23/2025] [Indexed: 03/27/2025] Open
Abstract
In recent years, a sharp increase in artificial intelligence (AI)-based software as medical devices has been seen in the United States and the European Union. Despite the huge potential of these devices in alleviating suffering through rapid identification and early intervention, their adoption in clinical practice has remained relatively slow due to ethical questions surrounding their usage. Even though there is no universal framework for the approval of these devices, the guiding principles behind individual regulatory bodies almost stay the same, with some more focused on the technical aspect while others involving the ethical aspects as well. The International Medical Device Regulators Forum devised a SaMD Working Group to outline the essential controls guiding the approval of these devices, but there is a lack of a structured approach for the regulatory approval process. This article outlines the principles of medical ethics, such as autonomy, beneficence, and fair distribution of healthcare sources, and how they relate to the use of AI-based devices. The core regulatory guidelines are then viewed in light of these ethical principles. We recommend that a comprehensive regulatory framework with integration of principles of medical ethics be made public. Though no universally accepted framework is available, regulating quality management, risk assessment, and data privacy would help build trust to promote the adoption of AI in healthcare.
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Affiliation(s)
| | - Mahdi Haq
- Neurology, NeuroCare.AI, Dallas, USA
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21
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Wang Y, Qu C, Zeng J, Jiang Y, Sun R, Li C, Li J, Xing C, Tan B, Liu K, Liu Q, Zhao D, Cao J, Hu W. Establishing a preoperative predictive model for gallbladder adenoma and cholesterol polyps based on machine learning: a multicentre retrospective study. World J Surg Oncol 2025; 23:27. [PMID: 39875897 PMCID: PMC11773841 DOI: 10.1186/s12957-025-03671-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2024] [Accepted: 01/19/2025] [Indexed: 01/30/2025] Open
Abstract
BACKGROUND With the rising diagnostic rate of gallbladder polypoid lesions (GPLs), differentiating benign cholesterol polyps from gallbladder adenomas with a higher preoperative malignancy risk is crucial. This study aimed to establish a preoperative prediction model capable of accurately distinguishing between gallbladder adenomas and cholesterol polyps using machine learning algorithms. MATERIALS AND METHODS We retrospectively analysed the patients' clinical baseline data, serological indicators, and ultrasound imaging data. Using 12 machine learning algorithms, 110 combination predictive models were constructed. The models were evaluated using internal and external cohort validation, receiver operating characteristic curves, area under the curve (AUC) values, calibration curves, and clinical decision curves to determine the best predictive model. RESULTS Among the 110 combination predictive models, the Support Vector Machine + Random Forest (SVM + RF) model demonstrated the highest AUC values of 0.972 and 0.922 in the training and internal validation sets, respectively, indicating an optimal predictive performance. The model-selected features included gallbladder wall thickness, polyp size, polyp echo, and pedicle. Evaluation through external cohort validation, calibration curves, and clinical decision curves further confirmed its excellent predictive ability for distinguishing gallbladder adenomas from cholesterol polyps. Additionally, this study identified age, adenosine deaminase level, and metabolic syndrome as potential predictive factors for gallbladder adenomas. CONCLUSION This study employed the machine learning combination algorithms and preoperative ultrasound imaging data to construct an SVM + RF predictive model, enabling effective preoperative differentiation of gallbladder adenomas and cholesterol polyps. These findings will assist clinicians in accurately assessing the risk of GPLs and providing personalised treatment strategies.
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Affiliation(s)
- Yubing Wang
- Department of Hepatobiliary and Pancreas, Affiliated Hospital of Qingdao University, NO.1677 Wutaishan Road, Qingdao, Shandong Province, 266555, China
| | - Chao Qu
- Department of Hepatobiliary and Pancreas, Affiliated Hospital of Qingdao University, NO.1677 Wutaishan Road, Qingdao, Shandong Province, 266555, China
| | - Jiange Zeng
- Department of Hepatobiliary and Pancreas, Affiliated Hospital of Qingdao University, NO.1677 Wutaishan Road, Qingdao, Shandong Province, 266555, China
| | - Yumin Jiang
- Department of Hepatobiliary and Pancreas, Affiliated Hospital of Qingdao University, NO.1677 Wutaishan Road, Qingdao, Shandong Province, 266555, China
| | - Ruitao Sun
- Department of Hepatobiliary and Pancreas, Affiliated Hospital of Qingdao University, NO.1677 Wutaishan Road, Qingdao, Shandong Province, 266555, China
| | - Changlei Li
- Department of Hepatobiliary and Pancreas, Affiliated Hospital of Qingdao University, NO.1677 Wutaishan Road, Qingdao, Shandong Province, 266555, China
| | - Jian Li
- Department of Hepatobiliary Surgery, Shandong Second Medical University, No.7166, Baotong West Street, Weicheng District, Weifang, Shandong Province, 261053, China
| | - Chengzhi Xing
- Department of Hepatobiliary Surgery, Yantai Mountain Hospital, 10087, Science and Technology Avenue, Laishan District, Yantai, Shandong, 264001, China
| | - Bin Tan
- Department of Hepatobiliary and Pancreas, Affiliated Hospital of Qingdao University, NO.1677 Wutaishan Road, Qingdao, Shandong Province, 266555, China
| | - Kui Liu
- Department of Hepatobiliary and Pancreas, Affiliated Hospital of Qingdao University, NO.1677 Wutaishan Road, Qingdao, Shandong Province, 266555, China
| | - Qing Liu
- Department of Hepatobiliary Surgery, Yantai Mountain Hospital, 10087, Science and Technology Avenue, Laishan District, Yantai, Shandong, 264001, China
| | - Dianpeng Zhao
- Department of Hepatobiliary Surgery, Shandong Second Medical University, No.7166, Baotong West Street, Weicheng District, Weifang, Shandong Province, 261053, China
| | - Jingyu Cao
- Department of Hepatobiliary and Pancreas, Affiliated Hospital of Qingdao University, NO.1677 Wutaishan Road, Qingdao, Shandong Province, 266555, China.
| | - Weiyu Hu
- Department of Hepatobiliary and Pancreas, Affiliated Hospital of Qingdao University, NO.1677 Wutaishan Road, Qingdao, Shandong Province, 266555, China.
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Yang L, Du L, Ge Y, Ou M, Huang W, Wang X. Prognosis modelling of adverse events for post-PCI treated AMI patients based on inflammation and nutrition indexes. BMC Cardiovasc Disord 2025; 25:36. [PMID: 39849369 PMCID: PMC11756209 DOI: 10.1186/s12872-025-04480-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2024] [Accepted: 01/06/2025] [Indexed: 01/25/2025] Open
Abstract
OBJECTIVE This study aimed to evaluate the predictive performance of inflammatory and nutritional indices for adverse cardiovascular events (ACE) in patients with acute myocardial infarction (AMI) after percutaneous coronary intervention (PCI) using a machine learning (ML) algorithm. METHODS AMI patients who underwent PCI were recruited and randomly divided into non/ACE groups. Inflammatory and nutritional indices were graded according to the laboratory examination reports. Logistic Regression was used to screen for factors that were significant for ML model establishment. The performances of the algorithms were evaluated in terms of accuracy, kappa, F1, receiver operating characteristic, precision recall curve, etc. RESULTS: Age, LVEF%, Killip Grade, heart rate, creatinine, albumin, neutrophil/lymphocyte ratio (NLR), platelet/lymphocyte ratio (PLR), and prognostic nutritional index (PNI) were significantly correlated with ACE by Logistic regression analysis (P < 0.05). These nine factors were employed to establish stepwise regression (SR), random forest (RF), naïve Bayes (NB), decision trees (DT), and artificial neutron network (ANN), whose performances were evaluated in terms of accuracy, kappa, F1, receiver operating characteristic, precision recall curve, etc. The accuracy of the decision tree was greater than that of other trees. The area under the curves was the highest in the ANN model compared with the other models. CONCLUSION ANN predictive performance had an advantage over other ML algorithms based on age, LVEF%, Killip Grade, heart rate, creatinine, albumin, NLR, PLR, and PNI.
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Affiliation(s)
- Liu Yang
- Department of Cardiology, The Affiliated 920th Hospital of Joint Logistics Support Force, Kunming Medical University, Kunming, China
| | - Li Du
- Department of Cardiology, 920th Hospital of Joint Logistics Support Force, People's Liberation Army of China (PLA), Kunming, Yunnan, China
| | - Yuanyuan Ge
- Department of Cardiology, 920th Hospital of Joint Logistics Support Force, People's Liberation Army of China (PLA), Kunming, Yunnan, China
| | - Muhui Ou
- Department of Cardiology, The Affiliated 920th Hospital of Joint Logistics Support Force, Kunming Medical University, Kunming, China
| | - Wanyan Huang
- Department of Cardiology, The Affiliated 920th Hospital of Joint Logistics Support Force, Kunming Medical University, Kunming, China
| | - Xianmei Wang
- Department of Cardiology, 920th Hospital of Joint Logistics Support Force, People's Liberation Army of China (PLA), Kunming, Yunnan, China.
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Chen H, Han J, Li J, Xiong J, Wang D, Han M, Shen Y, Lu W. Risk prediction models for feeding intolerance in patients with enteral nutrition: a systematic review and meta-analysis. Front Nutr 2025; 11:1522911. [PMID: 39877537 PMCID: PMC11772164 DOI: 10.3389/fnut.2024.1522911] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2024] [Accepted: 12/23/2024] [Indexed: 01/31/2025] Open
Abstract
Background Although more risk prediction models are available for feeding intolerance in enteral-nourishment patients, it is still unclear how well these models will work in clinical settings. Future research faces challenges in validating model accuracy across populations, enhancing interpretability for clinical use, and overcoming dataset limitations. Objective To thoroughly examine studies that have been published on feeding intolerance risk prediction models for enteral nutrition patients. Design Conducted a systematic review and meta-analysis of observational studies. Methods A comprehensive search of the literature was conducted using a range of databases, including China National Knowledge Infrastructure (CNKI), Wanfang Database, China Science and Technology Journal Database (VIP), SinoMed, PubMed, Web of Science, The Cochrane Library, Cumulative Index to Nursing and Allied Health Literature (CINAHL) and Embase. The search scope was confined to articles within the database from its inception until August 12th, 2024. The data from the selected studies should be extracted, including study design, subjects, duration of follow-up, data sources, outcome measures, sample size, handling of missing data, continuous variable handling methods, variable selection, final predictors, model development and performance, and form of model presentation. The applicability and bias risk were evaluated using the Prediction Model Risk of Bias Assessment Tool (PROBAST) checklist. Results A total of 1,472 studies were retrieved. Following the selection criteria, 18 prediction models sourced from 14 studies were incorporated into this review. In the field of model construction, only one study employed the use of multiple machine-learning techniques for the development of a model. In contrast, the remaining studies used logistic regression to construct FI risk prediction models. The incidence of FI in enteral nutrition was 32.4-63.1%. The top five predictors included in the model were APACHE II, age, albumin levels, intra-abdominal pressure, and mechanical ventilation. The reported AUC, or area under the curve, exhibited a range of values between 0.70 and 0.921. All studies were identified as having a high risk of bias, primarily due to the use of inappropriate data sources and inadequate reporting within the analysis domain. Conclusion Although the included studies reported a certain degree of discriminatory power in their predictive models to identify feeding intolerance in patients undergoing enteral nutrition, the PROBAST assessment tool deemed all the included studies to carry a significant risk of bias. Future research should emphasize the development of innovative predictive models. These endeavors should incorporate more extensive and diverse sample sizes, adhere to stringent methodological designs, and undergo rigorous multicenter external validation to ensure robustness and generalizability. Systematic review registration Identifier CRD42024585099, https://www.crd.york.ac.uk/prospero/display_record.php?RecordID=585099.
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Affiliation(s)
- Huijiao Chen
- Department of Neurosurgery, Tianjin Medical University General Hospital, Tianjin, China
| | - Jin Han
- Department of Neurosurgery, Tianjin Medical University General Hospital, Tianjin, China
| | - Jing Li
- Department of Neurosurgery, Tianjin Medical University General Hospital, Tianjin, China
| | - Jianhua Xiong
- Department of Neurosurgery, Tianjin Medical University General Hospital, Tianjin, China
| | - Dong Wang
- Department of Neurosurgery, Tianjin Medical University General Hospital, Tianjin, China
| | - Mingming Han
- Department of Neurosurgery, Tianjin Medical University General Hospital, Tianjin, China
| | - Yuehao Shen
- Department of Critical Care Medicine, Tianjin Medical University General Hospital, Tianjin, China
| | - Wenli Lu
- Department of Epidemiology and Health Statistics, Tianjin Medical University, Tianjin, China
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Figueiredo RG, Calderón J. Artificial intelligence in respiratory research: opportunities, pitfalls, and ethical considerations. J Bras Pneumol 2025; 50:e20240346. [PMID: 39813507 PMCID: PMC11665316 DOI: 10.36416/1806-3756/e20240346] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2025] Open
Affiliation(s)
- Ricardo G Figueiredo
- . Programa de Pós-Graduação em Saúde Coletiva, Universidade Estadual de Feira de Santana - PPGSC-UEFS - Feira de Santana (BA) Brasil
- . Fundação ProAR, Salvador (BA) Brasil
- . Methods in Epidemiologic, Clinical, and Operations Research-MECOR-program, American Thoracic Society/Asociación Latinoamericana del Tórax, Montevideo, Uruguay
| | - Juan Calderón
- . Methods in Epidemiologic, Clinical, and Operations Research-MECOR-program, American Thoracic Society/Asociación Latinoamericana del Tórax, Montevideo, Uruguay
- . Universidad Espíritu Santo, Samborondón, Ecuador
- . Respiralab Research Group, Guayaquil, Ecuador
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25
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Liu M, Li Z, Zhang X, Wei X. A nomograph model for predicting the risk of diabetes nephropathy. Int Urol Nephrol 2025:10.1007/s11255-024-04351-8. [PMID: 39776401 DOI: 10.1007/s11255-024-04351-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2024] [Accepted: 12/22/2024] [Indexed: 01/11/2025]
Abstract
OBJECTIVE Using machine learning to construct a prediction model for the risk of diabetes kidney disease (DKD) in the American diabetes population and evaluate its effect. METHODS First, a dataset of five cycles from 2009 to 2018 was obtained from the National Health and Nutrition Examination Survey (NHANES) database, weighted and then standardized (with the study population in the United States), and the data were processed and randomly grouped using R software. Next, variable selection for DKD patients was conducted using Lasso regression, two-way stepwise iterative regression, and random forest methods. A nomogram model was constructed for the risk prediction of DKD. Finally, the predictive performance, predictive value, calibration, and clinical effectiveness of the model were evaluated through the receipt of ROC curves, Brier score values, calibration curves (CC), and decision curves (DCA). In addition, we will visualize it. RESULTS A total of 4371 participants were selected and included in this study. Patients were randomly divided into a training set (n = 3066 people) and a validation set (n = 1305 people) in a 7:3 ratio. Using machine learning algorithms and drawing Venn diagrams, five variables significantly correlated with DKD risk were identified, namely Age, Hba1c, ALB, Scr, and TP. The area under the ROC curve (AUC) of the training set evaluation index for this model is 0.735, the net benefit rate of DCA is 2%-90%, and the Brier score is 0.172. The area under the ROC curve of the validation set (AUC) is 0.717, and the DCA curve shows a good net benefit rate. The Brier score is 0.177, and the calibration curve results of the validation set and training set are almost consistent. CONCLUSION The DKD risk nomogram model constructed in this study has good predictive performance, which helps to evaluate the risk of DKD as early as possible in clinical practice and formulate relevant intervention and treatment measures. The visual result can be used by doctors or individuals to estimate the probability of DKD risk, as a reference to help make better treatment decisions.
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Affiliation(s)
- Moli Liu
- Medical College, Qinghai University, Xining, 810016, People's Republic of China
| | - Zheng Li
- Department of Endocrinology, Qinghai Provincial People's Hospital, Xining, 810001, People's Republic of China
| | - Xu Zhang
- Blood Purification Center, The Fourth People's Hospital of Qinghai Province, Xining, 810007, People's Republic of China
| | - Xiaoxing Wei
- Medical College, Qinghai University, Xining, 810016, People's Republic of China.
- Qinghai Provincial Key Laboratory of Traditional Chinese Medicine Research for Glucolipid Metabolic Diseases, Xining, 810016, People's Republic of China.
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Ma Q, Gao J, Hui Y, Zhang ZM, Qiao YJ, Yang BF, Gong T, Zhao DM, Huang BR. Single-cell RNA-sequencing and genome-wide Mendelian randomisation along with abundant machine learning methods identify a novel B cells signature in gastric cancer. Discov Oncol 2025; 16:11. [PMID: 39760915 PMCID: PMC11703799 DOI: 10.1007/s12672-025-01759-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/28/2024] [Accepted: 01/02/2025] [Indexed: 01/07/2025] Open
Abstract
BACKGROUND Gastric cancer (GC) has a poor prognosis, considerable cellular heterogeneity, and ranks fifth among malignant tumours. Understanding the tumour microenvironment (TME) and intra-tumor heterogeneity (ITH) may lead to the development of novel GC treatments. METHODS The single-cell RNA sequencing (scRNA-seq) dataset was obtained from the Gene Expression Omnibus (GEO) database, where diverse immune cells were isolated and re-annotated based on cell markers established in the original study to ascertain their individual characteristics. We conducted a weighted gene co-expression network analysis (WGCNA) to identify genes with a significant correlation to GC. Utilising bulk RNA sequencing data, we employed machine learning integration methods to train specific biomarkers for the development of novel diagnostic combinations. A two-sample Mendelian randomisation study was performed to investigate the causal effect of biomarkers on gastric cancer (GC). Ultimately, we utilised the DSigDB database to acquire associations between signature genes and pharmaceuticals. RESULTS The 18 genes that made up the signature were as follows: ZFAND2A, PBX4, RAMP2, NNMT, RNASE1, CD93, CDH5, NFKBIE, VWF, DAB2, FAAH2, VAT1, MRAS, TSPAN4, EPAS1, AFAP1L1, DNM3. Patients were categorised into high-risk and low-risk groups according to their risk scores. Individuals in the high-risk cohort exhibited a dismal outlook. The Mendelian randomisation study demonstrated that individuals with a genetic predisposition for elevated NFKBIE levels exhibited a heightened likelihood of acquiring GC. Molecular docking indicates that gemcitabine and chloropyramine may serve as effective therapeutics against NFKBIE. CONCLUSIONS We developed and validated a signature utilising scRNA-seq and bulk sequencing data from gastric cancer patients. NFKBIE may function as a novel biomarker and therapeutic target for GC.
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Affiliation(s)
- Qi Ma
- Gansu Provincial Hospital of Traditional Chinese Medicine, Lanzhou, 730050, China
| | - Jie Gao
- Gansu University of Traditional Chinese Medicine, Lanzhou, China
| | - Yuan Hui
- Gansu Provincial Hospital of Traditional Chinese Medicine, Lanzhou, 730050, China
| | - Zhi-Ming Zhang
- Gansu Provincial Hospital of Traditional Chinese Medicine, Lanzhou, 730050, China
| | - Yu-Jie Qiao
- Gansu Provincial Hospital of Traditional Chinese Medicine, Lanzhou, 730050, China
| | - Bin-Feng Yang
- Gansu Provincial Hospital of Traditional Chinese Medicine, Lanzhou, 730050, China
| | - Ting Gong
- Gansu Provincial Hospital of Traditional Chinese Medicine, Lanzhou, 730050, China
| | - Duo-Ming Zhao
- Gansu Provincial Hospital of Traditional Chinese Medicine, Lanzhou, 730050, China
| | - Bang-Rong Huang
- Gansu Provincial Hospital of Traditional Chinese Medicine, Lanzhou, 730050, China.
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Wang XR, Zhang JT, Guo XH, Li MH, Jing WG, Cheng XL, Wei F. Digital identification of Aucklandiae radix, Vladimiriae radix, and Inulae radix based on multivariate algorithms and UHPLC-QTOF-MS analysis. PHYTOCHEMICAL ANALYSIS : PCA 2025; 36:92-100. [PMID: 39072803 DOI: 10.1002/pca.3421] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2024] [Revised: 06/13/2024] [Accepted: 07/01/2024] [Indexed: 07/30/2024]
Abstract
INTRODUCTION The identification of Aucklandiae Radix (AR), Vladimiriae Radix (VR), and Inulae Radix (IR) based on traits and microscopic features is susceptible to the state of samples and the subjective awareness of personnel, and the identification based on a few or single chemical compositions is a cumbersome and time-consuming procedure and fails to rationally and effectively utilize the information of unknown components and is not specificity enough. OBJECTIVES This study aimed to improve the identification efficiency, strengthen supervision, and realize digital identification of three Chinese medicines. Ultra-high-performance liquid chromatography with quadrupole time-of-flight mass spectrometry (UHPLC-QTOF-MS) combined with multivariate algorithms was used to explore the digital identification of AR, VR, and IR. MATERIALS AND METHODS UHPLC-QTOF-MS was used to analyze AR, VR, and IR. The MS data combined with multivariate algorithms such as partial least squares discrimination analysis (PLS-DA) and artificial neural networks (ANNs) was used to filter important variables and data modeling. Finally, the optimal model was selected for the digital identification of three herbs. RESULTS The results showed that three herbs can be distinguished on the whole level, and through feature screening, 591 characteristic variables combined with multivariate algorithms to construct data models. The ANN model was the best with accuracy = 0.983, precision = 0.984, and external verification showed the reliability and practicability of ANN model. CONCLUSION ANN model combined with MS data is of great significance for tdigital identification of AR, VR, and IR. It is an important reference for developing the digital identification of traditional Chinese medicines at the individual level based on UHPLC-QTOF-MS and multivariate algorithms.
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Affiliation(s)
- Xian Rui Wang
- Institute for Control of Traditional Chinese Medicine and Ethnic Medicine, National Institutes for Food and Drug Control, Beijing, China
| | - Jia Ting Zhang
- Institute for Control of Traditional Chinese Medicine and Ethnic Medicine, National Institutes for Food and Drug Control, Beijing, China
| | - Xiao Han Guo
- Institute for Control of Traditional Chinese Medicine and Ethnic Medicine, National Institutes for Food and Drug Control, Beijing, China
| | - Ming Hua Li
- Institute for Control of Traditional Chinese Medicine and Ethnic Medicine, National Institutes for Food and Drug Control, Beijing, China
| | - Wen Guang Jing
- Institute for Control of Traditional Chinese Medicine and Ethnic Medicine, National Institutes for Food and Drug Control, Beijing, China
| | - Xian Long Cheng
- Institute for Control of Traditional Chinese Medicine and Ethnic Medicine, National Institutes for Food and Drug Control, Beijing, China
| | - Feng Wei
- Institute for Control of Traditional Chinese Medicine and Ethnic Medicine, National Institutes for Food and Drug Control, Beijing, China
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28
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Xu J, Zhao X, Li F, Xiao Y, Li K. Prediction Models of Medication Adherence in Chronic Disease Patients: Systematic Review and Critical Appraisal. J Clin Nurs 2024. [PMID: 39740141 DOI: 10.1111/jocn.17577] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2023] [Revised: 04/25/2024] [Accepted: 11/19/2024] [Indexed: 01/02/2025]
Abstract
AIMS AND OBJECTIVES To summarise the currently developed risk prediction models for medication adherence in patients with chronic diseases and evaluate their performance and applicability. BACKGROUND Ensuring medication adherence is crucial in effectively managing chronic diseases. Although numerous studies have endeavoured to construct risk prediction models for predicting medication adherence in patients with chronic illnesses, the reliability and practicality of these models remain uncertain. DESIGN Systematic review. METHODS We conducted searches on PubMed, Web of Science, Cochrane, CINAHL, Embase and Medline from inception until 16 July 2023. Two authors independently screened risk prediction models for medication adherence that met the predefined inclusion criteria. The Prediction Model Risk of Bias Assessment Tool (PROBAST) was employed to evaluate both the risk of bias and clinical applicability of the included studies. This systematic review adhered to the 2020 PRISMA checklist. RESULTS The study included a total of 11 risk prediction models from 11 studies. Medication regimen and age were the most common predictors. The use of PROBAST revealed that some essential methodological details were not thoroughly reported in these models. Due to limitations in methodology, all models were rated as having a high-risk for bias. CONCLUSIONS According to PROBAST, the current models for predicting medication adherence in patients with chronic diseases exhibit a high risk of bias. Future research should prioritise enhancing the methodological quality of model development and conducting external validations on existing models. RELEVANCE TO CLINICAL PRACTICE Based on the review findings, recommendations have been provided to refine the construction methodology of prediction models with an aim of identifying high-risk individuals and key factors associated with low medication adherence in chronic diseases. PATIENT OR PUBLIC CONTRIBUTION This systematic review was conducted without patient or public participation.
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Affiliation(s)
- Jingwen Xu
- School of Nursing, Jilin University, Changchun, China
| | - Xinyi Zhao
- School of Nursing, Jilin University, Changchun, China
| | - Fei Li
- Department of Endocrinology, The First Hospital of Jilin University, Changchun, China
| | - Yan Xiao
- School of Nursing, Jilin University, Changchun, China
| | - Kun Li
- School of Nursing, Jilin University, Changchun, China
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Diniz P, Grimm B, Mouton C, Ley C, Andersen TE, Seil R. High specificity of an AI-powered framework in cross-checking male professional football anterior cruciate ligament tear reports in public databases. Knee Surg Sports Traumatol Arthrosc 2024. [PMID: 39724452 DOI: 10.1002/ksa.12571] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/15/2024] [Revised: 12/13/2024] [Accepted: 12/15/2024] [Indexed: 12/28/2024]
Abstract
PURPOSE While public databases like Transfermarkt provide valuable data for assessing the impact of anterior cruciate ligament (ACL) injuries in professional footballers, they require robust verification methods due to accuracy concerns. We hypothesised that an artificial intelligence (AI)-powered framework could cross-check ACL tear-related information from large publicly available data sets with high specificity. METHODS The AI-powered framework uses Google Programmable Search Engine to search a curated, multilingual list of websites and OpenAI's GPT to translate search queries, appraise search results and analyse injury-related information in search result items (SRIs). Specificity was the chosen performance metric-the AI-powered framework's ability to accurately identify texts that do not mention an athlete suffering an ACL tear-with SRI as the evaluation unit. A database of ACL tears in male professional footballers from first- and second-tier leagues worldwide (1999-2024) was collected from Transfermarkt.com, and players were randomly selected for appraisal until enough SRIs were obtained to validate the framework's specificity. Player age at injury and time until return-to-play (RTP) were recorded and compared with Union of European Football Associations (UEFA) Elite Club Injury Study data. RESULTS Verification of 231 athletes yielded 1546 SRIs. Human analysis of the SRIs showed that 335 mentioned an ACL tear, corresponding to 83 athletes with ACL tears. Specificity and sensitivity of GPT in identifying mentions of ACL tears in a player were 99.3% and 88.4%, respectively. Mean age at rupture was 26.6 years (standard deviation: 4.6, 95% confidence interval [CI]: 25.6-27.6). Median RTP time was 225 days (interquartile range: 96, 95% CI: 209-251), which is comparable to reports using data from the UEFA Elite Club Injury Study. CONCLUSION This study shows that an AI-powered framework can achieve high specificity in cross-checking ACL tear reports in male professional football from public databases, markedly reducing manual workload and enhancing the reliability of media-based sports medicine research. LEVEL OF EVIDENCE Level III.
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Affiliation(s)
- Pedro Diniz
- Department of Orthopaedic Surgery, Centre Hospitalier de Luxembourg - Clinique d'Eich, Luxembourg, Luxembourg
- Luxembourg Institute of Research in Orthopaedics, Sports Medicine and Science (LIROMS), Luxembourg, Luxembourg
- Luxembourg Institute of Health (LIH), Luxembourg, Luxembourg
- Department of Bioengineering, iBB - Institute for Bioengineering and Biosciences, Instituto Superior Técnico, Universidade de Lisboa, Lisbon, Portugal
| | - Bernd Grimm
- Luxembourg Institute of Health (LIH), Luxembourg, Luxembourg
| | - Caroline Mouton
- Department of Orthopaedic Surgery, Centre Hospitalier de Luxembourg - Clinique d'Eich, Luxembourg, Luxembourg
- Luxembourg Institute of Research in Orthopaedics, Sports Medicine and Science (LIROMS), Luxembourg, Luxembourg
| | - Christophe Ley
- Department of Mathematics, University of Luxembourg, Esch-sur-Alzette, Luxembourg
| | - Thor Einar Andersen
- Oslo Sports Trauma Research Center, Department of Sports Medicine, Norwegian School of Sport Sciences, Oslo, Norway
| | - Romain Seil
- Department of Orthopaedic Surgery, Centre Hospitalier de Luxembourg - Clinique d'Eich, Luxembourg, Luxembourg
- Luxembourg Institute of Research in Orthopaedics, Sports Medicine and Science (LIROMS), Luxembourg, Luxembourg
- Luxembourg Institute of Health (LIH), Luxembourg, Luxembourg
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Wang T, Chen R, Fan N, Zang L, Yuan S, Du P, Wu Q, Wang A, Li J, Kong X, Zhu W. Machine Learning and Deep Learning for Diagnosis of Lumbar Spinal Stenosis: Systematic Review and Meta-Analysis. J Med Internet Res 2024; 26:e54676. [PMID: 39715552 PMCID: PMC11704645 DOI: 10.2196/54676] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2023] [Revised: 10/23/2024] [Accepted: 11/11/2024] [Indexed: 12/25/2024] Open
Abstract
BACKGROUND Lumbar spinal stenosis (LSS) is a major cause of pain and disability in older individuals worldwide. Although increasing studies of traditional machine learning (TML) and deep learning (DL) were conducted in the field of diagnosing LSS and gained prominent results, the performance of these models has not been analyzed systematically. OBJECTIVE This systematic review and meta-analysis aimed to pool the results and evaluate the heterogeneity of the current studies in using TML or DL models to diagnose LSS, thereby providing more comprehensive information for further clinical application. METHODS This review was performed under the PRISMA (Preferred Reporting Items for Systematic Reviews and Meta-Analyses) guidelines using articles extracted from PubMed, Embase databases, and Cochrane Library databases. Studies that evaluated DL or TML algorithms assessment value on diagnosing LSS were included, while those with duplicated or unavailable data were excluded. Quality Assessment of Diagnostic Accuracy Studies 2 was used to estimate the risk of bias in each study. The MIDAS module and the METAPROP module of Stata (StataCorp) were used for data synthesis and statistical analyses. RESULTS A total of 12 studies with 15,044 patients reported the assessment value of TML or DL models for diagnosing LSS. The risk of bias assessment yielded 4 studies with high risk of bias, 3 with unclear risk of bias, and 5 with completely low risk of bias. The pooled sensitivity and specificity were 0.84 (95% CI: 0.82-0.86; I2=99.06%) and 0.87 (95% CI 0.84-0.90; I2=98.7%), respectively. The diagnostic odds ratio was 36 (95% CI 26-49), the positive likelihood ratio (LR+) was 6.6 (95% CI 5.1-8.4), and the negative likelihood ratio (LR-) was 0.18 (95% CI 0.16-0.21). The summary receiver operating characteristic curves, the area under the curve of TML or DL models for diagnosing LSS of 0.92 (95% CI 0.89-0.94), indicating a high diagnostic value. CONCLUSIONS This systematic review and meta-analysis emphasize that despite the generally satisfactory diagnostic performance of artificial intelligence systems in the experimental stage for the diagnosis of LSS, none of them is reliable and practical enough to apply in real clinical practice. Further efforts, including optimization of model balance, widely accepted objective reference standards, multimodal strategy, large dataset for training and testing, external validation, and sufficient and scientific report, should be made to bridge the distance between current TML or DL models and real-life clinical applications in future studies. TRIAL REGISTRATION PROSPERO CRD42024566535; https://tinyurl.com/msx59x8k.
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Affiliation(s)
- Tianyi Wang
- Beijing Chaoyang Hospital, Capital Medical University, Beijing, China
| | - Ruiyuan Chen
- Beijing Chaoyang Hospital, Capital Medical University, Beijing, China
| | - Ning Fan
- Beijing Chaoyang Hospital, Capital Medical University, Beijing, China
| | - Lei Zang
- Beijing Chaoyang Hospital, Capital Medical University, Beijing, China
| | - Shuo Yuan
- Beijing Chaoyang Hospital, Capital Medical University, Beijing, China
| | - Peng Du
- Beijing Chaoyang Hospital, Capital Medical University, Beijing, China
| | - Qichao Wu
- Beijing Chaoyang Hospital, Capital Medical University, Beijing, China
| | - Aobo Wang
- Beijing Chaoyang Hospital, Capital Medical University, Beijing, China
| | - Jian Li
- Beijing Chaoyang Hospital, Capital Medical University, Beijing, China
| | - Xiaochuan Kong
- Beijing Chaoyang Hospital, Capital Medical University, Beijing, China
| | - Wenyi Zhu
- Beijing Chaoyang Hospital, Capital Medical University, Beijing, China
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Ji XL, Xu S, Li XY, Xu JH, Han RS, Guo YJ, Duan LP, Tian ZB. Prognostic prediction models for postoperative patients with stage I to III colorectal cancer based on machine learning. World J Gastrointest Oncol 2024; 16:4597-4613. [PMID: 39678810 PMCID: PMC11577370 DOI: 10.4251/wjgo.v16.i12.4597] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/19/2024] [Revised: 09/07/2024] [Accepted: 09/14/2024] [Indexed: 11/12/2024] Open
Abstract
BACKGROUND Colorectal cancer (CRC) is characterized by high heterogeneity, aggressiveness, and high morbidity and mortality rates. With machine learning (ML) algorithms, patient, tumor, and treatment features can be used to develop and validate models for predicting survival. In addition, important variables can be screened and different applications can be provided that could serve as vital references when making clinical decisions and potentially improving patient outcomes in clinical settings. AIM To construct prognostic prediction models and screen important variables for patients with stage I to III CRC. METHODS More than 1000 postoperative CRC patients were grouped according to survival time (with cutoff values of 3 years and 5 years) and assigned to training and testing cohorts (7:3). For each 3-category survival time, predictions were made by 4 ML algorithms (all-variable and important variable-only datasets), each of which was validated via 5-fold cross-validation and bootstrap validation. Important variables were screened with multivariable regression methods. Model performance was evaluated and compared before and after variable screening with the area under the curve (AUC). SHapley Additive exPlanations (SHAP) further demonstrated the impact of important variables on model decision-making. Nomograms were constructed for practical model application. RESULTS Our ML models performed well; the model performance before and after important parameter identification was consistent, and variable screening was effective. The highest pre- and postscreening model AUCs 95% confidence intervals in the testing set were 0.87 (0.81-0.92) and 0.89 (0.84-0.93) for overall survival, 0.75 (0.69-0.82) and 0.73 (0.64-0.81) for disease-free survival, 0.95 (0.88-1.00) and 0.88 (0.75-0.97) for recurrence-free survival, and 0.76 (0.47-0.95) and 0.80 (0.53-0.94) for distant metastasis-free survival. Repeated cross-validation and bootstrap validation were performed in both the training and testing datasets. The SHAP values of the important variables were consistent with the clinicopathological characteristics of patients with tumors. The nomograms were created. CONCLUSION We constructed a comprehensive, high-accuracy, important variable-based ML architecture for predicting the 3-category survival times. This architecture could serve as a vital reference for managing CRC patients.
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Affiliation(s)
- Xiao-Lin Ji
- Department of Gastroenterology, Beijing Key Laboratory for Helicobacter Pylori Infection and Upper Gastrointestinal Diseases, Peking University Third Hospital, Beijing 100191, China
| | - Shuo Xu
- Beijing Aerospace Wanyuan Science Technology Co., Ltd., China Academy of Launch Vehicle Technology, Beijing 100176, China
| | - Xiao-Yu Li
- Department of Gastroenterology, The Affiliated Hospital of Qingdao University, Qingdao 266003, Shandong Province, China
| | - Jin-Huan Xu
- Institute of Automation, Qilu University of Technology (Shandong Academy of Sciences), Jinan 250014, Shandong Province, China
| | - Rong-Shuang Han
- Department of Gastroenterology, The Affiliated Hospital of Qingdao University, Qingdao 266003, Shandong Province, China
| | - Ying-Jie Guo
- Department of Gastroenterology, The Affiliated Hospital of Qingdao University, Qingdao 266003, Shandong Province, China
| | - Li-Ping Duan
- Department of Gastroenterology, Beijing Key Laboratory for Helicobacter Pylori Infection and Upper Gastrointestinal Diseases, Peking University Third Hospital, Beijing 100191, China
| | - Zi-Bin Tian
- Department of Gastroenterology, The Affiliated Hospital of Qingdao University, Qingdao 266003, Shandong Province, China
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Zeng S, Wang XL, Yang H. Radiomics and radiogenomics: extracting more information from medical images for the diagnosis and prognostic prediction of ovarian cancer. Mil Med Res 2024; 11:77. [PMID: 39673071 PMCID: PMC11645790 DOI: 10.1186/s40779-024-00580-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/18/2023] [Accepted: 11/07/2024] [Indexed: 12/15/2024] Open
Abstract
Ovarian cancer (OC) remains one of the most lethal gynecological malignancies globally. Despite the implementation of various medical imaging approaches for OC screening, achieving accurate differential diagnosis of ovarian tumors continues to pose significant challenges due to variability in image performance, resulting in a lack of objectivity that relies heavily on the expertise of medical professionals. This challenge can be addressed through the emergence and advancement of radiomics, which enables high-throughput extraction of valuable information from conventional medical images. Furthermore, radiomics can integrate with genomics, a novel approach termed radiogenomics, which allows for a more comprehensive, precise, and personalized assessment of tumor biological features. In this review, we present an extensive overview of the application of radiomics and radiogenomics in diagnosing and predicting ovarian tumors. The findings indicate that artificial intelligence methods based on imaging can accurately differentiate between benign and malignant ovarian tumors, as well as classify their subtypes. Moreover, these methods are effective in forecasting survival rates, treatment outcomes, metastasis risk, and recurrence for patients with OC. It is anticipated that these advancements will function as decision-support tools for managing OC while contributing to the advancement of precision medicine.
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Affiliation(s)
- Song Zeng
- Department of Ultrasound, Shengjing Hospital of China Medical University, Shenyang, 110004, China
| | - Xin-Lu Wang
- Department of Ultrasound, Shengjing Hospital of China Medical University, Shenyang, 110004, China
| | - Hua Yang
- Department of Ultrasound, Shengjing Hospital of China Medical University, Shenyang, 110004, China.
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Zou XC, Rao XP, Huang JB, Zhou J, Chao HC, Zeng T. Predicting distant metastasis of bladder cancer using multiple machine learning models: a study based on the SEER database with external validation. Front Oncol 2024; 14:1477166. [PMID: 39735606 PMCID: PMC11681425 DOI: 10.3389/fonc.2024.1477166] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2024] [Accepted: 11/19/2024] [Indexed: 12/31/2024] Open
Abstract
Background and purpose Distant metastasis in bladder cancer is linked to poor prognosis and significant mortality. Machine learning (ML), a key area of artificial intelligence, has shown promise in the diagnosis, staging, and treatment of bladder cancer. This study aimed to employ various ML techniques to predict distant metastasis in patients with bladder cancer. Patients and methods Patients diagnosed with bladder cancer in the Surveillance, Epidemiology, and End Results (SEER) database from 2000 to 2021 were included in this study. After a rigorous screening process, a total of 4,108 patients were selected for further analysis, divided in a 7:3 ratio into a training cohort and an internal validation cohort. In addition, 118 patients treated at the Second Affiliated Hospital of Nanchang University were included as an external validation cohort. Features were filtered using the least absolute shrinkage and selection operator (LASSO) regression algorithm. Based on the significant features identified, three ML algorithms were utilized to develop prediction models: logistic regression, support vector machine (SVM), and linear discriminant analysis (LDA). The predictive performance of the three models was evaluated by obtaining the area under the receiver operating characteristic (ROC) curve (AUC), the precision, the accuracy, and the F1 score. Results According to the statistical results, the final probability of distant metastasis in the population was 12.0% (n = 495). LASSO regression analysis revealed that age, chemotherapy, tumor size, the examination of non-regional lymph nodes, and regional lymph node evaluation were significantly associated with distant metastasis of bladder cancer. In the internal validation cohort, the prediction accuracy rates for logistic regression, SVM, and LDA were 0.874, 0.877, and 0.845, respectively. The precision rates were 0.805, 0.769, and 0.827, respectively, and the F1 scores were 0.821, 0.819, and 0.835, respectively. The ROC curve demonstrated that the AUC for all models was greater than 0.7. In the external validation cohort, the prediction accuracy rates for logistic regression, SVM, and LDA were 0.856, 0.848, and 0.797, respectively, with the ROC curve indicating that the AUC also exceeded 0.7. The precision rates were 0.877, 0.718, and 0.736, respectively, and the F1 scores were 0.797, 0.778, and 0.762, respectively. Among the algorithms used, logistic regression demonstrated better predictive efficiency than the other two methods. The top three variables with the highest importance scores in the logistic regression were non-regional lymph nodes, age, and chemotherapy. Conclusion The prediction model developed using three ML algorithms demonstrated strong accuracy and discriminative capability in predicting distant metastasis in patients with bladder cancer. This might help clinicians in understanding patient prognosis and in formulating personalized treatment strategies, ultimately improving the overall prognosis of patients with bladder cancer.
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Affiliation(s)
- Xin Chang Zou
- The Second Affiliated Hospital, Jiangxi Medical College, Nanchang University, Nanchang, China
| | - Xue Peng Rao
- The Second Affiliated Hospital, Jiangxi Medical College, Nanchang University, Nanchang, China
| | - Jian Biao Huang
- The Second Affiliated Hospital, Jiangxi Medical College, Nanchang University, Nanchang, China
| | - Jie Zhou
- The Second Affiliated Hospital, Jiangxi Medical College, Nanchang University, Nanchang, China
| | - Hai Chao Chao
- Department of Urology, Second Affiliated Hospital of Nanchang University, Nanchang, China
| | - Tao Zeng
- Department of Urology, Second Affiliated Hospital of Nanchang University, Nanchang, China
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Russo S, Martini A, Luzzi V, Garbarino S, Pietrafesa E, Polimeni A. Exploring the complexity of obstructive sleep apnea: findings from machine learning on diagnosis and predictive capacity of individual factors. Sleep Breath 2024; 29:49. [PMID: 39636493 DOI: 10.1007/s11325-024-03191-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2024] [Revised: 09/04/2024] [Accepted: 10/14/2024] [Indexed: 12/07/2024]
Abstract
PURPOSE Obstructive sleep apnoea (OSA) is a prevalent sleep disorder characterized by pharyngeal airway collapse during sleep, leading to intermittent hypoxia, intrathoracic pressure swings, and sleep fragmentation. OSA is associated with various comorbidities and risk factors, contributing to its substantial economic and social burden. Machine learning (ML) techniques offer promise in predicting OSA severity and understanding its complex pathogenesis. This study aims to compare the accuracy of different ML techniques in predicting OSA severity and identify key associated factors contributing to OSA. METHODS Adult patients suspected of OSA underwent clinical assessments and polysomnography. Demographic, anthropometric and clinical data were collected. Five supervised ML models (logistic regression, decision tree, random forest, extreme gradient boosting, support vector machine) were employed, optimized through grid search and cross-validation. RESULTS ML models exhibited varied performance across OSA severity levels. SVM demonstrated the highest accuracy for mild OSA, XGBoost for moderate OSA, and random forest for severe OSA. Logistic regression showed the highest AUC for moderate and severe OSA. Anthropometric measures, gender, and hypertension were significant predictors of OSA severity. CONCLUSION ML models offer valuable insights into predicting OSA severity and identifying associated factors. Our findings support the relevant potential clinical utility of ML in OSA management, although further validation and refinement are warranted.
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Affiliation(s)
- Simone Russo
- Department of Occupational and Environmental Medicine, Epidemiology and Hygiene, Italian Workers' Compensation Authority (INAIL), Via Fontana Candida 1, Monte Porzio Catone, 00078, Rome, Italy.
| | - Agnese Martini
- Department of Occupational and Environmental Medicine, Epidemiology and Hygiene, Italian Workers' Compensation Authority (INAIL), Via Fontana Candida 1, Monte Porzio Catone, 00078, Rome, Italy
| | - Valeria Luzzi
- Department of Oral and Maxillofacial Sciences, UOC Paediatric Dentistry, Sapienza University of Rome, Rome, Italy
| | - Sergio Garbarino
- Department of Neuroscience, Rehabilitation, Ophthalmology, Genetics and Maternal/Child Sciences (DINOGMI), University of Genoa, Genoa, Italy
| | - Emma Pietrafesa
- Department of Occupational and Environmental Medicine, Epidemiology and Hygiene, Italian Workers' Compensation Authority (INAIL), Via Fontana Candida 1, Monte Porzio Catone, 00078, Rome, Italy
| | - Antonella Polimeni
- Department of Oral and Maxillofacial Sciences, UOC Paediatric Dentistry, Sapienza University of Rome, Rome, Italy
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Salgado-López P, Casellas J, Solar Diaz I, Rathje T, Gasa J, Solà-Oriol D. Applicability of machine learning methods for classifying lightweight pigs in commercial conditions. Transl Anim Sci 2024; 8:txae171. [PMID: 39697266 PMCID: PMC11652721 DOI: 10.1093/tas/txae171] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2024] [Accepted: 12/04/2024] [Indexed: 12/20/2024] Open
Abstract
The varying growth rates within a group of pigs present a significant challenge for the current all-in-all-out systems in the pig industry. This study evaluated the applicability of statistical methods for classifying pigs at risk of growth retardation at different production stages using a robust dataset collected under commercial conditions. Data from 26,749 crossbred pigs (Yorkshire × Landrace) with Duroc at weaning (17 to 27 d), 15,409 pigs at the end of the nursery period (60 to 78 d), and 4996 pigs at slaughter (151 to 161 d) were analyzed under three different cut points (lowest 10%, 20%, and 30% weights) to characterize light animals. Records were randomly split into training and testing sets in a 2:1 ratio, and each training dataset was analyzed using an ordinary least squares approach and three machine learning algorithms (decision tree, random forest, and generalized boosted regression). The classification performance of each analytical approach was evaluated by the area under the curve (AUC). In all production stages and cut points, the random forest and generalized boosted regression models demonstrated superior classification performance, with AUC estimates ranging from 0.772 to 0.861. The parametric linear model also showed acceptable classification performance, with slightly lower AUC estimates ranging from 0.752 to 0.818. In contrast, the single decision tree was categorized as worthless, with AUC estimates between 0.608 and 0.726. Key prediction factors varied across production stages, with birthweight-related factors being most significant at weaning, and weight at previous stages becoming more crucial later in the production cycle. These findings suggest the potential of machine learning algorithms to improve decision-making and efficiency in pig production systems by accurately identifying pigs at risk of growth retardation.
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Affiliation(s)
- Pau Salgado-López
- Department of Animal and Food Science, Animal Nutrition and Welfare Service (SNIBA), Autonomous University of Barcelona, Bellaterra 08193, Spain
| | - Joaquim Casellas
- Department of Animal and Food Science, Autonomous University of Barcelona, Bellaterra 08193, Spain
| | | | | | - Josep Gasa
- Department of Animal and Food Science, Animal Nutrition and Welfare Service (SNIBA), Autonomous University of Barcelona, Bellaterra 08193, Spain
| | - David Solà-Oriol
- Department of Animal and Food Science, Animal Nutrition and Welfare Service (SNIBA), Autonomous University of Barcelona, Bellaterra 08193, Spain
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Dhirachaikulpanich D, Xie J, Chen X, Li X, Madhusudhan S, Zheng Y, Beare NAV. Using Deep Learning to Segment Retinal Vascular Leakage and Occlusion in Retinal Vasculitis. Ocul Immunol Inflamm 2024; 32:2291-2298. [PMID: 38261457 DOI: 10.1080/09273948.2024.2305185] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2023] [Revised: 12/20/2023] [Accepted: 01/08/2024] [Indexed: 01/25/2024]
Abstract
PURPOSE Retinal vasculitis (RV) is characterised by retinal vascular leakage, occlusion or both on fluorescein angiography (FA). There is no standard scheme available to segment RV features. We aimed to develop a deep learning model to segment both vascular leakage and occlusion in RV. METHODS Four hundred and sixty-three FA images from 82 patients with retinal vasculitis were used to develop a deep learning model, in 60:20:20 ratio for training:validation:testing. Parameters, including deep learning architectures (DeeplabV3+, UNet++ and UNet), were altered to find the best binary segmentation model separately for retinal vascular leakage and occlusion, using a Dice score to determine the reliability of each model. RESULTS Our best model for vascular leakage had a Dice score of 0.6279 (95% confidence interval (CI) 0.5584-0.6974). For occlusion, the best model achieved a Dice score of 0.6992 (95% CI 0.6109-0.7874). CONCLUSION Our RV segmentation models could perform reliable segmentation for retinal vascular leakage and occlusion in FAs of RV patients.
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Affiliation(s)
- Dhanach Dhirachaikulpanich
- Department of Eye & Vision Sciences, University of Liverpool, Liverpool, UK
- Faculty of Medicine, Siriraj Hospital, Mahidol University, Bangkok, Thailand
- St Paul's Eye Unit, Liverpool University Hospitals NHS Foundation Trust, Liverpool, UK
| | - Jianyang Xie
- Department of Eye & Vision Sciences, University of Liverpool, Liverpool, UK
| | - Xiuju Chen
- Xiamen Eye Center, Xiamen University, Xiamen, Fujian, China
| | - Xiaoxin Li
- Xiamen Eye Center, Xiamen University, Xiamen, Fujian, China
- Department of Ophthalmology, Peking University People's Hospital, Beijing, China
| | - Savita Madhusudhan
- Department of Eye & Vision Sciences, University of Liverpool, Liverpool, UK
- St Paul's Eye Unit, Liverpool University Hospitals NHS Foundation Trust, Liverpool, UK
| | - Yalin Zheng
- Department of Eye & Vision Sciences, University of Liverpool, Liverpool, UK
- St Paul's Eye Unit, Liverpool University Hospitals NHS Foundation Trust, Liverpool, UK
- Liverpool Centre for Cardiovascular Science, University of Liverpool and Liverpool Heart & Chest Hospital, Liverpool, UK
| | - Nicholas A V Beare
- Department of Eye & Vision Sciences, University of Liverpool, Liverpool, UK
- St Paul's Eye Unit, Liverpool University Hospitals NHS Foundation Trust, Liverpool, UK
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Peng C, Xu S, Wang Y, Chen B, Liu D, Shi Y, Zhang J, Zhou Z. Construction and evaluation of a predictive model for the types of sleep respiratory events in patients with OSA based on hypoxic parameters. Sleep Breath 2024; 28:2457-2467. [PMID: 39207665 DOI: 10.1007/s11325-024-03147-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2024] [Revised: 08/04/2024] [Accepted: 08/14/2024] [Indexed: 09/04/2024]
Abstract
OBJECTIVE To explore the differences and associations of hypoxic parameters among distinct types of respiratory events in patients with obstructive sleep apnea (OSA) and to construct prediction models for the types of respiratory events based on hypoxic parameters. METHODS A retrospective analysis was conducted on a cohort of 67 patients with polysomnography (PSG). All overnight recorded respiratory events with pulse oxygen saturation (SpO2) desaturation were categorized into four categories: hypopnea (Hyp, 3409 events), obstructive apnea (OA, 5561 events), central apnea (CA, 1110 events) and mixed apnea (MA, 1372 events). All event recordings were exported separately from the PSG software as comma-separated variable (.csv) files, which were imported into custom-built MATLAB software for analysis. Based on 13 hypoxic parameters, artificial neural network (ANN) and binary logistic regression (BLR) were separately used for construction of Hyp, OA, CA and MA models. Receiver operating characteristic (ROC) curves were employed to compare the various predictive indicators of the two models for different respiratory event types, respectively. RESULTS Both ANN and BLR models suggested that 13 hypoxic parameters significantly influenced the classification of respiratory event types; The area under the ROC curves of the ANN models surpassed those of traditional BLR models respiratory event types. CONCLUSION The ANN models constructed based on the 13 hypoxic parameters exhibited superior predictive capabilities for distinct types of respiratory events, providing a feasible new tool for automatic identification of respiratory event types using sleep SpO2.
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Affiliation(s)
- Cheng Peng
- Department of Respiratory and Critical Care Medicine, Tianjin Medical University General Hospital, Tianjin, China
| | - Shaorong Xu
- The Affiliated Hospital of Guizhou Medical University, Guizhou, China
| | - Yan Wang
- Department of Respiratory and Critical Care Medicine, Tianjin Medical University General Hospital, Tianjin, China.
| | - Baoyuan Chen
- Department of Respiratory and Critical Care Medicine, Tianjin Medical University General Hospital, Tianjin, China
| | - Dan Liu
- Department of Respiratory and Critical Care Medicine, Tianjin Medical University General Hospital, Tianjin, China
| | - Yu Shi
- Department of Respiratory and Critical Care Medicine, Tianjin Medical University General Hospital, Tianjin, China
| | - Jing Zhang
- Biomedical Engineering, School of Precision Instrument and Opto-Electronics Engineering, Tianjin University, Tianjin, 300072, China
| | - Zhongxing Zhou
- Biomedical Engineering, School of Precision Instrument and Opto-Electronics Engineering, Tianjin University, Tianjin, 300072, China.
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Rivera CA, Bhatia S, Morell AA, Daggubati LC, Merenzon MA, Sheriff SA, Luther E, Chandar J, S Levy A, Metzler AR, Berke CN, Goryawala M, Mellon EA, Bhatia RG, Nagornaya N, Saigal G, I de la Fuente M, Komotar RJ, Ivan ME, Shah AH. Metabolic signatures derived from whole-brain MR-spectroscopy identify early tumor progression in high-grade gliomas using machine learning. J Neurooncol 2024; 170:579-589. [PMID: 39180640 PMCID: PMC11614968 DOI: 10.1007/s11060-024-04812-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2024] [Accepted: 08/19/2024] [Indexed: 08/26/2024]
Abstract
PURPOSE Recurrence for high-grade gliomas is inevitable despite maximal safe resection and adjuvant chemoradiation, and current imaging techniques fall short in predicting future progression. However, we introduce a novel whole-brain magnetic resonance spectroscopy (WB-MRS) protocol that delves into the intricacies of tumor microenvironments, offering a comprehensive understanding of glioma progression to inform expectant surgical and adjuvant intervention. METHODS We investigated five locoregional tumor metabolites in a post-treatment population and applied machine learning (ML) techniques to analyze key relationships within seven regions of interest: contralateral normal-appearing white matter (NAWM), fluid-attenuated inversion recovery (FLAIR), contrast-enhancing tumor at time of WB-MRS (Tumor), areas of future recurrence (AFR), whole-brain healthy (WBH), non-progressive FLAIR (NPF), and progressive FLAIR (PF). Five supervised ML classification models and a neural network were developed, optimized, trained, tested, and validated. Lastly, a web application was developed to host our novel calculator, the Miami Glioma Prediction Map (MGPM), for open-source interaction. RESULTS Sixteen patients with histopathological confirmation of high-grade glioma prior to WB-MRS were included in this study, totaling 118,922 whole-brain voxels. ML models successfully differentiated normal-appearing white matter from tumor and future progression. Notably, the highest performing ML model predicted glioma progression within fluid-attenuated inversion recovery (FLAIR) signal in the post-treatment setting (mean AUC = 0.86), with Cho/Cr as the most important feature. CONCLUSIONS This study marks a significant milestone as the first of its kind to unveil radiographic occult glioma progression in post-treatment gliomas within 8 months of discovery. These findings underscore the utility of ML-based WB-MRS growth predictions, presenting a promising avenue for the guidance of early treatment decision-making. This research represents a crucial advancement in predicting the timing and location of glioblastoma recurrence, which can inform treatment decisions to improve patient outcomes.
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Affiliation(s)
- Cameron A Rivera
- Department of Neurosurgery, University of Miami Miller School of Medicine, Miami, FL, USA.
| | - Shovan Bhatia
- Department of Neurosurgery, University of Miami Miller School of Medicine, Miami, FL, USA
- Department of Neurosurgery, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA
| | - Alexis A Morell
- Department of Neurosurgery, University of Miami Miller School of Medicine, Miami, FL, USA
- Department of Critical Care, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA
| | - Lekhaj C Daggubati
- Department of Neurosurgery, University of Miami Miller School of Medicine, Miami, FL, USA
- Surgical Neuro-Oncology, District of Columbia, George Washington Medical Faculty Associates, Washington, USA
| | - Martin A Merenzon
- Department of Neurosurgery, University of Miami Miller School of Medicine, Miami, FL, USA
- Department of Neurosurgery, Yale University School of Medicine, New Haven, CT, USA
| | - Sulaiman A Sheriff
- Department of Radiation Oncology, University of Miami Miller School of Medicine, Miami, FL, USA
- Department of Radiology, University of Miami Miller School of Medicine, Miami, FL, USA
| | - Evan Luther
- Department of Neurosurgery, University of Miami Miller School of Medicine, Miami, FL, USA
- Department of Neurosurgery, Allegheny Health Network, Pittsburgh, PA, USA
| | - Jay Chandar
- Department of Neurosurgery, University of Miami Miller School of Medicine, Miami, FL, USA
- Herbert Wertheim College of Medicine, Florida International University, Miami, FL, USA
| | - Adam S Levy
- Department of Neurosurgery, University of Miami Miller School of Medicine, Miami, FL, USA
| | - Ashley R Metzler
- Department of Neurosurgery, University of Miami Miller School of Medicine, Miami, FL, USA
| | - Chandler N Berke
- Department of Neurosurgery, University of Miami Miller School of Medicine, Miami, FL, USA
| | - Mohammed Goryawala
- Department of Radiology, University of Miami Miller School of Medicine, Miami, FL, USA
| | - Eric A Mellon
- Department of Radiation Oncology, University of Miami Miller School of Medicine, Miami, FL, USA
- Sylvester Comprehensive Cancer Center, University of Miami Miller School of Medicine, 1475 NW 12th Ave, Miami, FL, USA
| | - Rita G Bhatia
- Department of Radiology, University of Miami Miller School of Medicine, Miami, FL, USA
| | - Natalya Nagornaya
- Department of Radiology, University of Miami Miller School of Medicine, Miami, FL, USA
| | - Gaurav Saigal
- Department of Radiology, University of Miami Miller School of Medicine, Miami, FL, USA
| | - Macarena I de la Fuente
- Sylvester Comprehensive Cancer Center, University of Miami Miller School of Medicine, 1475 NW 12th Ave, Miami, FL, USA
- Department of Neurology, University of Miami Miller School of Medicine, Miami, FL, USA
| | - Ricardo J Komotar
- Department of Neurosurgery, University of Miami Miller School of Medicine, Miami, FL, USA
- Sylvester Comprehensive Cancer Center, University of Miami Miller School of Medicine, 1475 NW 12th Ave, Miami, FL, USA
| | - Michael E Ivan
- Department of Neurosurgery, University of Miami Miller School of Medicine, Miami, FL, USA
- Sylvester Comprehensive Cancer Center, University of Miami Miller School of Medicine, 1475 NW 12th Ave, Miami, FL, USA
| | - Ashish H Shah
- Department of Neurosurgery, University of Miami Miller School of Medicine, Miami, FL, USA
- Sylvester Comprehensive Cancer Center, University of Miami Miller School of Medicine, 1475 NW 12th Ave, Miami, FL, USA
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Wu H, Li C, Song J, Zhou J. Developing predictive models for residual back pain after percutaneous vertebral augmentation treatment for osteoporotic thoracolumbar compression fractures based on machine learning technique. J Orthop Surg Res 2024; 19:803. [PMID: 39609923 PMCID: PMC11603673 DOI: 10.1186/s13018-024-05271-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/04/2024] [Accepted: 11/13/2024] [Indexed: 11/30/2024] Open
Abstract
BACKGROUND Machine learning (ML) has been widely applied to predict the outcomes of numerous diseases. The current study aimed to develop a prognostic prediction model using machine learning algorithms and identify risk factors associated with residual back pain in patients with osteoporotic vertebrae compression fracture (OVCF) following percutaneous vertebroplasty (PVP). METHODS A total of 863 OVCF patients who underwent PVP surgery were enrolled and analyzed. One month following surgery, a Visual Analog Scale (VAS) score of ≥ 4 was deemed to signify residual low back pain following the operation and patients were grouped into a residual pain group and pain-free group. The optimal feature set for both machine learning and statistical models was adjusted based on a 2000-resample bootstrap-based internal validation via an exhaustive search. The area under the curve (AUC), classification accuracy, sensitivity, and specificity of each model were then calculated to evaluate the predictive performance of each model. RESULTS In our current study, two main findings were observed: (1) Compared with statistical models, ML models exhibited superior predictive performance, with SVM demonstrating the highest prediction accuracy; (2) several variables were identified as the most predictive factors by both the machine learning and statistical models, including bone cement volume, number of fractured vertebrae, facet joint violation, paraspinal muscle degeneration, and intravertebral vacuum cleft. CONCLUSION Overall, the study demonstrated that machine learning classifiers such as SVM can effectively predict residual back pain for patients with OVCF following PVP while identifying associated predictors in a multivariate manner.
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Affiliation(s)
- Hao Wu
- Department of Anesthesiology, Tianjin Baodi Hospital, Baodi Clinical College of Tianjin Medical University, Tianjin, 301800, China
| | - Chao Li
- Department of Orthopedics, Xiangyang Central Hospital, Affiliated Hospital of Hubei University of Arts and Science, Xiangyang, Hubei, 441000, China
| | - Jiajun Song
- Department of Orthopedics, Tianjin Medical University General Hospital, Tianjin, 300052, China
| | - Jiaming Zhou
- Department of Orthopedics, Tianjin Medical University General Hospital, Tianjin, 300052, China.
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Yan Y, Gan D, Zhang P, Zou H, Li M. A machine learning-based predictive model discriminates nonalcoholic steatohepatitis from nonalcoholic fatty liver disease. Heliyon 2024; 10:e38848. [PMID: 39512464 PMCID: PMC11539579 DOI: 10.1016/j.heliyon.2024.e38848] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2024] [Revised: 08/31/2024] [Accepted: 10/01/2024] [Indexed: 11/15/2024] Open
Abstract
Background Non-alcoholic fatty liver disease (NAFLD) is a leading cause of liver-related morbidity and mortality. The diagnosis of non-alcoholic steatohepatitis (NASH) plays a crucial role in the management of NAFLD patients. Objective The aim of our observational study was to build a machine learning model to identify NASH in NAFLD patients. Methods The clinical characteristics of 259 NAFLD patients and their initial laboratory data (Cohort 1) were collected to train the model and carry out internal validation. We compared the models built by five machine learning algorithms and screened out the best models. Receiver operating characteristic (ROC) curves, sensitivity, specificity, and accuracy were used to evaluate the performance of the model. In addition, the NAFLD patients in Cohort 2 (n = 181) were externally verified. Results We finally identified six independent risk factors for predicting NASH, including neutrophil percentage (NEU%), aspartate aminotransferase/alanine aminotransferase (AST/ALT), hematocrit (HCT), creatinine (CREA), uric acid (UA), and prealbumin (PA). The NASH-XGB6 model built using the XGBoost algorithm showed sufficient prediction accuracy, with ROC values of 0.95 (95 % CI, 0.91-0.98) and 0.90 (95 % CI, 0.88-0.93) in Cohort 1 and Cohort 2, respectively. Conclusions NASH-XGB6 can serve as an effective tool for distinguishing NASH patients from NAFLD patients.
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Affiliation(s)
- Yuqi Yan
- Department of Clinical Laboratory Medicine, The First Affiliated Hospital of Jinan University, Guangzhou, 510630, China
| | - Danhui Gan
- Department of Clinical Pathology, The First Affiliated Hospital of Jinan University, Guangzhou, 510632, China
| | - Ping Zhang
- Department of Clinical Laboratory Medicine, The First Affiliated Hospital of Jinan University, Guangzhou, 510630, China
| | - Haizhu Zou
- Department of Clinical Laboratory Medicine, The First Affiliated Hospital of Jinan University, Guangzhou, 510630, China
| | - MinMin Li
- Department of Clinical Laboratory Medicine, The First Affiliated Hospital of Jinan University, Guangzhou, 510630, China
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Lin J, Gu C, Sun Z, Zhang S, Nie S. Machine learning-based model for predicting the occurrence and mortality of nonpulmonary sepsis-associated ARDS. Sci Rep 2024; 14:28240. [PMID: 39548234 PMCID: PMC11568264 DOI: 10.1038/s41598-024-79899-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2024] [Accepted: 11/13/2024] [Indexed: 11/17/2024] Open
Abstract
OBJECTIVE The objective was to establish a machine learning-based model for predicting the occurrence and mortality of nonpulmonary sepsis-associated ARDS. METHODS 80% of sepsis patients selected randomly from the MIMIC-IV database, without prior pulmonary conditions and with nonpulmonary infection sites, were used to construct prediction models through machine learning techniques (including K-nearest neighbour, extreme gradient boosting, support vector machine, deep neural network, and decision tree methods). The remaining 20% of patients were utilized to validate the model's accuracy. Additionally, local data were employed for further model validation. RESULTS A total of 11,409 patients were included, with the most common type of infection being bloodstream infection. A total of 7,632 (66.9%) patients developed nonpulmonary sepsis-associated ARDS (NPS-ARDS). Patients with NPS-ARDS had significantly longer ICU stays (6.2 ± 5.2 days vs. 4.4 ± 3.7 days, p < 0.01) and higher 28-day mortality rates (19.5% vs. 14.9%, p < 0.01). Both internal and external validation demonstrated that the model constructed with the extreme gradient boosting method had high accuracy. In the internal validation, the model predicted NPS-ARDS and mortality in such patients with accuracies of 77.5% and 71.8%, respectively. In the external validation, the model predicted NPS-ARDS and mortality in these patients with accuracies of 78.0% and 81.4%, respectively. CONCLUSION The model established via the extreme gradient boosting method can predict the occurrence and mortality of nonpulmonary sepsis-associated ARDS to a certain extent.
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Affiliation(s)
- Jinfeng Lin
- Department of Emergency Medicine, Jinling Clinical Medical College of Nanjing Medical University, Nanjing, 210016, Jiangsu, China
- Critical Care Medicine, Nantong Third People's Hospital, Affiliated Nantong Hospital 3 of Nantong University, Nantong, 226000, Jiangsu, China
| | - Chunfeng Gu
- Ctrip Infrastructure Service, Trip.com Group Ltd, Shanghai, 200335, China
| | - Zhaorui Sun
- Department of Emergency Medicine, Jinling Clinical Medical College of Nanjing Medical University, Nanjing, 210016, Jiangsu, China
| | - Suyan Zhang
- Critical Care Medicine, Nantong Third People's Hospital, Affiliated Nantong Hospital 3 of Nantong University, Nantong, 226000, Jiangsu, China.
| | - Shinan Nie
- Department of Emergency Medicine, Jinling Clinical Medical College of Nanjing Medical University, Nanjing, 210016, Jiangsu, China.
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Hudon A, Beaudoin M, Phraxayavong K, Potvin S, Dumais A. Exploring the Intersection of Schizophrenia, Machine Learning, and Genomics: Scoping Review. JMIR BIOINFORMATICS AND BIOTECHNOLOGY 2024; 5:e62752. [PMID: 39546776 PMCID: PMC11607571 DOI: 10.2196/62752] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/30/2024] [Revised: 10/06/2024] [Accepted: 10/16/2024] [Indexed: 11/17/2024]
Abstract
BACKGROUND An increasing body of literature highlights the integration of machine learning with genomic data in psychiatry, particularly for complex mental health disorders such as schizophrenia. These advanced techniques offer promising potential for uncovering various facets of these disorders. A comprehensive review of the current applications of machine learning in conjunction with genomic data within this context can significantly enhance our understanding of the current state of research and its future directions. OBJECTIVE This study aims to conduct a systematic scoping review of the use of machine learning algorithms with genomic data in the field of schizophrenia. METHODS To conduct a systematic scoping review, a search was performed in the electronic databases MEDLINE, Web of Science, PsycNet (PsycINFO), and Google Scholar from 2013 to 2024. Studies at the intersection of schizophrenia, genomic data, and machine learning were evaluated. RESULTS The literature search identified 2437 eligible articles after removing duplicates. Following abstract screening, 143 full-text articles were assessed, and 121 were subsequently excluded. Therefore, 21 studies were thoroughly assessed. Various machine learning algorithms were used in the identified studies, with support vector machines being the most common. The studies notably used genomic data to predict schizophrenia, identify schizophrenia features, discover drugs, classify schizophrenia amongst other mental health disorders, and predict the quality of life of patients. CONCLUSIONS Several high-quality studies were identified. Yet, the application of machine learning with genomic data in the context of schizophrenia remains limited. Future research is essential to further evaluate the portability of these models and to explore their potential clinical applications.
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Affiliation(s)
- Alexandre Hudon
- Department of psychiatry and addictology, Faculty of Medicine, Université de Montréal, Montréal, QC, Canada
- Centre de recherche de l'Institut universitaire en santé mentale de Montréal, Montréal, QC, Canada
- Institut universitaire en santé mentale de Montréal, Montréal, QC, Canada
| | - Mélissa Beaudoin
- Department of psychiatry and addictology, Université de Montréal, Montréal, QC, Canada
- Faculty of Medicine, McGill University, Montréal, QC, Canada
| | | | - Stéphane Potvin
- Centre de recherche de l'Institut universitaire en santé mentale de Montréal, Montréal, QC, Canada
- Department of psychiatry and addictology, Université de Montréal, Montréal, QC, Canada
| | - Alexandre Dumais
- Centre de recherche de l'Institut universitaire en santé mentale de Montréal, Montréal, QC, Canada
- Department of psychiatry and addictology, Université de Montréal, Montréal, QC, Canada
- Services et Recherches Psychiatriques AD, Montréal, QC, Canada
- Institut nationale de psychiatrie légale Philippe-Pinel, Montréal, QC, Canada
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Naik N, Roth B, Lundy SD. Artificial Intelligence for Clinical Management of Male Infertility, a Scoping Review. Curr Urol Rep 2024; 26:17. [PMID: 39520645 PMCID: PMC11550229 DOI: 10.1007/s11934-024-01239-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/06/2024] [Indexed: 11/16/2024]
Abstract
PURPOSE OF REVIEW Infertility impacts one in six couples worldwide, with male infertility contributing to approximately half of these cases. However, the causes of infertility remain incompletely understood, and current methods of clinical management are cost-restrictive, time-intensive, and have limited success. Artificial intelligence (AI) may help address some of these challenges. In this review, we synthesize recent literature in AI with implications for the clinical management of male infertility. RECENT FINDINGS Artificial intelligence may offer opportunities for proactive, cost-effective, and efficient management of male infertility, specifically in the areas of hypogonadism, semen analysis, and interventions such as assisted reproductive technology. Patients may benefit from the integration of AI into a male infertility specialist's clinical workflow. The ability of AI to integrate large volumes of data into predictive models could help clinicians guide conversations with patients on the value of various treatment options in infertility, but caution must be taken to ensure the quality of care being delivered remains high.
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Affiliation(s)
- Noopur Naik
- Cleveland Clinic Lerner College of Medicine at Case Western Reserve University, Cleveland, OH, USA.
| | - Bradley Roth
- School of Medicine, University of California, Irvine, CA, USA
| | - Scott D Lundy
- Department of Urology, Cleveland Clinic Foundation, Glickman Urological and Kidney Institute, Cleveland, OH, 44195, USA
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Krepper D, Cesari M, Hubel NJ, Zelger P, Sztankay MJ. Machine learning models including patient-reported outcome data in oncology: a systematic literature review and analysis of their reporting quality. J Patient Rep Outcomes 2024; 8:126. [PMID: 39499409 PMCID: PMC11538124 DOI: 10.1186/s41687-024-00808-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2024] [Accepted: 10/30/2024] [Indexed: 11/07/2024] Open
Abstract
PURPOSE To critically examine the current state of machine learning (ML) models including patient-reported outcome measure (PROM) scores in cancer research, by investigating the reporting quality of currently available studies and proposing areas of improvement for future use of ML in the field. METHODS PubMed and Web of Science were systematically searched for publications of studies on patients with cancer applying ML models with PROM scores as either predictors or outcomes. The reporting quality of applied ML models was assessed utilizing an adapted version of the MI-CLAIM (Minimum Information about CLinical Artificial Intelligence Modelling) checklist. The key variables of the checklist are study design, data preparation, model development, optimization, performance, and examination. Reproducibility and transparency complement the reporting quality criteria. RESULTS The literature search yielded 1634 hits, of which 52 (3.2%) were eligible. Thirty-six (69.2%) publications included PROM scores as a predictor and 32 (61.5%) as an outcome. Results of the reporting quality appraisal indicate a potential for improvement, especially in the areas of model examination. According to the standards of the MI-CLAIM checklist, the reporting quality of ML models in included studies proved to be low. Only nine (17.3%) publications present a discussion about the clinical applicability of the developed model and reproducibility and only three (5.8%) provide a code to reproduce the model and the results. CONCLUSION The herein performed critical examination of the status quo of the application of ML models including PROM scores in published oncological studies allowed the identification of areas of improvement for reporting and future use of ML in the field.
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Affiliation(s)
- Daniela Krepper
- Department of Psychiatry, Psychotherapy, Psychosomatics and Medical Psychology, University Hospital of Psychiatry II, Medical University of Innsbruck, Innsbruck, Austria.
| | - Matteo Cesari
- Department of Neurology and Neurosurgery, Medical University of Innsbruck, Innsbruck, Austria
| | - Niclas J Hubel
- Department of Psychiatry, Psychotherapy, Psychosomatics and Medical Psychology, University Hospital of Psychiatry II, Medical University of Innsbruck, Innsbruck, Austria
| | - Philipp Zelger
- University Hospital for Hearing, Speech & Voice Disorders, Medical University of Innsbruck, Innsbruck, Austria
| | - Monika J Sztankay
- Department of Psychiatry, Psychotherapy, Psychosomatics and Medical Psychology, University Hospital of Psychiatry II, Medical University of Innsbruck, Innsbruck, Austria
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Krivicich LM, Jan K, Kunze KN, Rice M, Nho SJ. Machine Learning Algorithms Can Be Reliably Leveraged to Identify Patients at High Risk of Prolonged Postoperative Opioid Use Following Orthopedic Surgery: A Systematic Review. HSS J 2024; 20:589-599. [PMID: 39479504 PMCID: PMC11520020 DOI: 10.1177/15563316231164138] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/24/2022] [Accepted: 12/16/2022] [Indexed: 11/02/2024]
Abstract
Background: Machine learning (ML) has emerged as a method to determine patient-specific risk for prolonged postoperative opioid use after orthopedic procedures. Purpose: We sought to analyze the efficacy and validity of ML algorithms in identifying patients who are at high risk for prolonged opioid use following orthopedic procedures. Methods: PubMed, EMBASE, and Web of Science Core Collection databases were queried for articles published prior to August 2021 for articles applying ML to predict prolonged postoperative opioid use following orthopedic surgeries. Features pertaining to patient demographics, surgical procedures, and ML algorithm performance were analyzed. Results: Ten studies met inclusion criteria: 4 spine, 3 knee, and 3 hip. Studies reported postoperative opioid use over 30 to 365 days and varied in defining prolonged use. Prolonged postsurgical opioid use frequency ranged from 4.3% to 40.9%. C-statistics for spine studies ranged from 0.70 to 0.81; for knee studies, 0.75 to 0.77; and for hip studies, 0.71 to 0.77. Brier scores for spine studies ranged from 0.039 to 0.076; for knee, 0.01 to 0.124; and for hip, 0.052 to 0.21. Seven articles reported calibration intercept (range: -0.02 to 0.16) and calibration slope (range: 0.88 to 1.08). Nine articles included a decision curve analysis. No investigations performed external validation. Thematic predictors of prolonged postoperative opioid use were preoperative opioid, benzodiazepine, or antidepressant use and extremes of age depending on procedure population. Conclusions: This systematic review found that ML algorithms created to predict risk for prolonged postoperative opioid use in orthopedic surgery patients demonstrate good discriminatory performance. The frequency and predictive features of prolonged postoperative opioid use identified were consistent with existing literature, although algorithms remain limited by a lack of external validation and imperfect adherence to predictive modeling guidelines.
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Affiliation(s)
| | - Kyleen Jan
- Departments of Sports Medicine and Orthopedic Surgery, Rush University Medical Center, Chicago, IL, USA
| | - Kyle N. Kunze
- Department of Orthopedic Surgery, Hospital for Special Surgery, New York, NY, USA
| | - Morgan Rice
- Departments of Sports Medicine and Orthopedic Surgery, Rush University Medical Center, Chicago, IL, USA
| | - Shane J. Nho
- Departments of Sports Medicine and Orthopedic Surgery, Rush University Medical Center, Chicago, IL, USA
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Kumari K, Pahuja SK, Kumar S. A Comprehensive Examination of ChatGPT's Contribution to the Healthcare Sector and Hepatology. Dig Dis Sci 2024; 69:4027-4043. [PMID: 39354272 DOI: 10.1007/s10620-024-08659-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/02/2024] [Accepted: 09/20/2024] [Indexed: 10/03/2024]
Abstract
Artificial Intelligence and Natural Language Processing technology have demonstrated significant promise across several domains within the medical and healthcare sectors. This technique has numerous uses in the field of healthcare. One of the primary challenges in implementing ChatGPT in healthcare is the requirement for precise and up-to-date data. In the case of the involvement of sensitive medical information, it is imperative to carefully address concerns regarding privacy and security when using GPT in the healthcare sector. This paper outlines ChatGPT and its relevance in the healthcare industry. It discusses the important aspects of ChatGPT's workflow and highlights the usual features of ChatGPT specifically designed for the healthcare domain. The present review uses the ChatGPT model within the research domain to investigate disorders associated with the hepatic system. This review demonstrates the possible use of ChatGPT in supporting researchers and clinicians in analyzing and interpreting liver-related data, thereby improving disease diagnosis, prognosis, and patient care.
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Affiliation(s)
- Kabita Kumari
- Department of Instrumentation and Control Engineering, Dr B. R. Ambedkar National Institute of Technology, Jalandhar, Punjab, 144011, India.
| | - Sharvan Kumar Pahuja
- Department of Instrumentation and Control Engineering, Dr B. R. Ambedkar National Institute of Technology, Jalandhar, Punjab, 144011, India
| | - Sanjeev Kumar
- Biomedical Instrumentation Unit, CSIR-Central Scientific Instruments Organisation (CSIR-CSIO), Chandigarh, India
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Castagno S, Gompels B, Strangmark E, Robertson-Waters E, Birch M, van der Schaar M, McCaskie AW. Understanding the role of machine learning in predicting progression of osteoarthritis. Bone Joint J 2024; 106-B:1216-1222. [PMID: 39481441 DOI: 10.1302/0301-620x.106b11.bjj-2024-0453.r1] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/02/2024]
Abstract
Aims Machine learning (ML), a branch of artificial intelligence that uses algorithms to learn from data and make predictions, offers a pathway towards more personalized and tailored surgical treatments. This approach is particularly relevant to prevalent joint diseases such as osteoarthritis (OA). In contrast to end-stage disease, where joint arthroplasty provides excellent results, early stages of OA currently lack effective therapies to halt or reverse progression. Accurate prediction of OA progression is crucial if timely interventions are to be developed, to enhance patient care and optimize the design of clinical trials. Methods A systematic review was conducted in accordance with PRISMA guidelines. We searched MEDLINE and Embase on 5 May 2024 for studies utilizing ML to predict OA progression. Titles and abstracts were independently screened, followed by full-text reviews for studies that met the eligibility criteria. Key information was extracted and synthesized for analysis, including types of data (such as clinical, radiological, or biochemical), definitions of OA progression, ML algorithms, validation methods, and outcome measures. Results Out of 1,160 studies initially identified, 39 were included. Most studies (85%) were published between 2020 and 2024, with 82% using publicly available datasets, primarily the Osteoarthritis Initiative. ML methods were predominantly supervised, with significant variability in the definitions of OA progression: most studies focused on structural changes (59%), while fewer addressed pain progression or both. Deep learning was used in 44% of studies, while automated ML was used in 5%. There was a lack of standardization in evaluation metrics and limited external validation. Interpretability was explored in 54% of studies, primarily using SHapley Additive exPlanations. Conclusion Our systematic review demonstrates the feasibility of ML models in predicting OA progression, but also uncovers critical limitations that currently restrict their clinical applicability. Future priorities should include diversifying data sources, standardizing outcome measures, enforcing rigorous validation, and integrating more sophisticated algorithms. This paradigm shift from predictive modelling to actionable clinical tools has the potential to transform patient care and disease management in orthopaedic practice.
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Affiliation(s)
- Simone Castagno
- Department of Surgery, University of Cambridge, Cambridge, UK
| | | | | | | | - Mark Birch
- Department of Surgery, University of Cambridge, Cambridge, UK
| | - Mihaela van der Schaar
- Department of Applied Mathematics and Theoretical Physics, University of Cambridge, Cambridge, UK
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Wang XR, Wu HN, Li MH, Guo XH, Cheng XL, Jing WG, Wei F. Comprehensive Analysis of Bile Medicines Based on UHPLC-QTOF-MS E and Machine Learning. ACS OMEGA 2024; 9:43264-43271. [PMID: 39464475 PMCID: PMC11500153 DOI: 10.1021/acsomega.4c08260] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/08/2024] [Revised: 09/17/2024] [Accepted: 09/26/2024] [Indexed: 10/29/2024]
Abstract
Based on UHPLC-QTOF-MSE analysis and quantized processing, combined with machine learning algorithms, data modeling was carried out to realize digital identification of bear bile powder (BBP), chicken bile powder (CIBP), duck bile powder (DBP), cow bile powder (CBP), sheep bile powder (SBP), pig bile powder (PBP), snake bile powder (SNBP), rabbit bile powder (RBP), and goose bile powder (GBP). First, 173 batches of bile samples were analyzed by UHPLC-QTOF-MSE to obtain the retention time-exact mass (RTEM) data pair to identify bile acid-like chemical components. Then, the data were modeled by combining support vector machine (SVM), random forest (RF), artificial neural network (ANN), gradient boosting (GB), AdaBoost (AB), and Naive Bayes (NB), and the models were evaluated by the parameters of accuracy (Acc), precision (P), and area under the curve (AUC). Finally, the bile medicines were digitally identified based on the optimal model. The results showed that the RF model constructed based on the identified 12 bile acid-like chemical constituents and random forest algorithm is optimal with ACC, P, and AUC > 0.950. In addition, the accuracy of external identification verification of 42 batches of bile medicines detected at different times is 100.0%. So based on UHPLC-QTOF-MSE analysis and combined with the RF algorithm, it can efficiently and accurately realize the digital identification of bile medicines, which can provide reference and assistance for the quality control of bile medicines. In addition, hyodeoxycholic acid, glycohyodeoxycholic acid, and taurochenodeoxycholic acid, and so forth are the most important bile acid constituents for the identification of nine bile medicines.
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Affiliation(s)
- Xian rui Wang
- Institute
for Control of Traditional Chinese Medicine and Ethnic Medicine, National Institutes for Food and Drug Control, Beijing 102629, China
| | - Hao nan Wu
- Institute
for Control of Traditional Chinese Medicine and Ethnic Medicine, National Institutes for Food and Drug Control, Beijing 102629, China
- Faculty
of Functional Food and Wine, Shenyang Pharmaceutical University, Shenyang 110016, China
| | - Ming hua Li
- Institute
for Control of Traditional Chinese Medicine and Ethnic Medicine, National Institutes for Food and Drug Control, Beijing 102629, China
| | - Xiao han Guo
- Institute
for Control of Traditional Chinese Medicine and Ethnic Medicine, National Institutes for Food and Drug Control, Beijing 102629, China
| | - Xian long Cheng
- Institute
for Control of Traditional Chinese Medicine and Ethnic Medicine, National Institutes for Food and Drug Control, Beijing 102629, China
| | - Wen guang Jing
- Institute
for Control of Traditional Chinese Medicine and Ethnic Medicine, National Institutes for Food and Drug Control, Beijing 102629, China
| | - Feng Wei
- Institute
for Control of Traditional Chinese Medicine and Ethnic Medicine, National Institutes for Food and Drug Control, Beijing 102629, China
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Basso Á, Salas F, Hernández M, Fernández A, Sierra A, Jiménez C. Machine learning and deep learning models for the diagnosis of apical periodontitis: a scoping review. Clin Oral Investig 2024; 28:600. [PMID: 39419893 DOI: 10.1007/s00784-024-05989-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2024] [Accepted: 10/02/2024] [Indexed: 10/19/2024]
Abstract
OBJECTIVES To assess the existing literature on the use of machine learning (ML) and deep learning (DL) models for diagnosing apical periodontitis (AP) in humans. MATERIALS AND METHODS A scoping review was conducted following the Arksey and O'Malley framework. The PubMed, SCOPUS, and Web of Science databases were searched, focusing on articles using ML/DL approaches for AP diagnosis. No restrictions were applied. Two independent reviewers screened publications and charted data in predefined Excel tables for analysis. RESULTS Nineteen publications focused on diagnosing AP by identifying periapical radiolucent lesions (PRLs) in dental radiographs were included. The average sensitivity and specificity for reviewed models were 83% and 90%, respectively. Only three studies explored the direct impact of artificial intelligence (AI) assistance on clinicians' diagnostic performance. Both consistently showed improved sensitivity without compromising specificity. Significant variability in dataset sizes, labeling techniques, and algorithm configurations was noticed. CONCLUSIONS Findings affirm AI models' effectiveness and transformative potential in diagnosing AP by improving the accurate detection of periapical radiolucencies using dental radiographs. However, the lack of standardized reporting on crucial aspects of methodology and performance metrics prevents establishing a definitive diagnostic approach using AI. Further studies are needed to expand AI applications in AP diagnosis beyond radiographic analysis. CLINICAL RELEVANCE AI can potentially improve diagnostic accuracy in AP diagnosis by enhancing the sensitivity of PRL detection in dental radiographs without compromising specificity.
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Affiliation(s)
- Ángelo Basso
- Facultad de Odontología, Universidad Andres Bello, Santiago, Región Metropolitana, 8370133, Chile
| | - Fernando Salas
- Facultad de Odontología, Universidad Andres Bello, Santiago, Región Metropolitana, 8370133, Chile
| | - Marcela Hernández
- Laboratorio de Biología Periodontal, Facultad de Odontología, Universidad de Chile, Santiago, 8380544, Chile
- Departamento de Patología y Medicina Oral, Facultad de Odontología, Universidad de Chile, Santiago, 8380544, Chile
| | - Alejandra Fernández
- Facultad de Odontología, Universidad Andres Bello, Santiago, Región Metropolitana, 8370133, Chile
- Laboratorio de Interacciones Microbianas, Facultad de Odontología, Universidad Andres Bello, Santiago, Región Metropolitana, 8370133, Chile
| | - Alfredo Sierra
- Facultad de Odontología, Universidad Andres Bello, Santiago, Región Metropolitana, 8370133, Chile.
- Laboratorio de Biología Periodontal, Facultad de Odontología, Universidad de Chile, Santiago, 8380544, Chile.
| | - Constanza Jiménez
- Facultad de Odontología, Universidad Andres Bello, Santiago, Región Metropolitana, 8370133, Chile.
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Xiaojian Y, Zhanbo Q, Jian C, Zefeng W, Jian L, Jin L, Yuefen P, Shuwen H. Deep learning application in prediction of cancer molecular alterations based on pathological images: a bibliographic analysis via CiteSpace. J Cancer Res Clin Oncol 2024; 150:467. [PMID: 39422817 PMCID: PMC11489169 DOI: 10.1007/s00432-024-05992-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2024] [Accepted: 10/09/2024] [Indexed: 10/19/2024]
Abstract
BACKGROUND The advancements in artificial intelligence (AI) technology for image recognition were propelling molecular pathology research into a new era. OBJECTIVE To summarize the hot spots and research trends in the field of molecular pathology image recognition. METHODS Relevant articles from January 1st, 2010, to August 25th, 2023, were retrieved from the Web of Science Core Collection. Subsequently, CiteSpace was employed for bibliometric and visual analysis, generating diverse network diagrams illustrating keywords, highly cited references, hot topics, and research trends. RESULTS A total of 110 relevant articles were extracted from a pool of 10,205 articles. The overall publication count exhibited a rising trend each year. The leading contributors in terms of institutions, countries, and authors were Maastricht University (11 articles), the United States (38 articles), and Kather Jacob Nicholas (9 articles), respectively. Half of the top ten research institutions, based on publication volume, were affiliated with Germany. The most frequently cited article was authored by Nicolas Coudray et al. accumulating 703 citations. The keyword "Deep learning" had the highest frequency in 2019. Notably, the highlighted keywords from 2022 to 2023 included "microsatellite instability", and there were 21 articles focusing on utilizing algorithms to recognize microsatellite instability (MSI) in colorectal cancer (CRC) pathological images. CONCLUSION The use of DL is expected to provide a new strategy to effectively solve the current problem of time-consuming and expensive molecular pathology detection. Therefore, further research is needed to address issues, such as data quality and standardization, model interpretability, and resource and infrastructure requirements.
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Affiliation(s)
- Yu Xiaojian
- Huzhou Central Hospital, Affiliated Central Hospital Huzhou University, No.1558, Sanhuan North Road, Wuxing District, Huzhou, 313000, Zhejiang Province, China
- Key Laboratory of Multiomics Research and Clinical Transformation of Digestive Cancer of Huzhou, Huzhou, China
- Huzhou Central Hospital, Fifth School of Clinical Medicine of Zhejiang Chinese Medical University, Huzhou, China
| | - Qu Zhanbo
- Huzhou Central Hospital, Affiliated Central Hospital Huzhou University, No.1558, Sanhuan North Road, Wuxing District, Huzhou, 313000, Zhejiang Province, China
- Key Laboratory of Multiomics Research and Clinical Transformation of Digestive Cancer of Huzhou, Huzhou, China
- Huzhou Central Hospital, Fifth School of Clinical Medicine of Zhejiang Chinese Medical University, Huzhou, China
| | - Chu Jian
- Huzhou Central Hospital, Affiliated Central Hospital Huzhou University, No.1558, Sanhuan North Road, Wuxing District, Huzhou, 313000, Zhejiang Province, China
- Key Laboratory of Multiomics Research and Clinical Transformation of Digestive Cancer of Huzhou, Huzhou, China
- Huzhou Central Hospital, Fifth School of Clinical Medicine of Zhejiang Chinese Medical University, Huzhou, China
| | - Wang Zefeng
- Huzhou Central Hospital, Affiliated Central Hospital Huzhou University, No.1558, Sanhuan North Road, Wuxing District, Huzhou, 313000, Zhejiang Province, China
- Key Laboratory of Multiomics Research and Clinical Transformation of Digestive Cancer of Huzhou, Huzhou, China
- Huzhou Central Hospital, Fifth School of Clinical Medicine of Zhejiang Chinese Medical University, Huzhou, China
| | - Liu Jian
- Huzhou Central Hospital, Affiliated Central Hospital Huzhou University, No.1558, Sanhuan North Road, Wuxing District, Huzhou, 313000, Zhejiang Province, China
- Key Laboratory of Multiomics Research and Clinical Transformation of Digestive Cancer of Huzhou, Huzhou, China
- Huzhou Central Hospital, Fifth School of Clinical Medicine of Zhejiang Chinese Medical University, Huzhou, China
| | - Liu Jin
- Huzhou Central Hospital, Affiliated Central Hospital Huzhou University, No.1558, Sanhuan North Road, Wuxing District, Huzhou, 313000, Zhejiang Province, China
- Key Laboratory of Multiomics Research and Clinical Transformation of Digestive Cancer of Huzhou, Huzhou, China
- Huzhou Central Hospital, Fifth School of Clinical Medicine of Zhejiang Chinese Medical University, Huzhou, China
| | - Pan Yuefen
- Huzhou Central Hospital, Affiliated Central Hospital Huzhou University, No.1558, Sanhuan North Road, Wuxing District, Huzhou, 313000, Zhejiang Province, China.
- Key Laboratory of Multiomics Research and Clinical Transformation of Digestive Cancer of Huzhou, Huzhou, China.
- Huzhou Central Hospital, Fifth School of Clinical Medicine of Zhejiang Chinese Medical University, Huzhou, China.
| | - Han Shuwen
- Huzhou Central Hospital, Affiliated Central Hospital Huzhou University, No.1558, Sanhuan North Road, Wuxing District, Huzhou, 313000, Zhejiang Province, China.
- Key Laboratory of Multiomics Research and Clinical Transformation of Digestive Cancer of Huzhou, Huzhou, China.
- Huzhou Central Hospital, Fifth School of Clinical Medicine of Zhejiang Chinese Medical University, Huzhou, China.
- ASIR(Institute - Association of intelligent systems and robotics), Rueil-Malmaison, France.
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