Identification of H. pylori strain specific DNA sequences between two clinical isolates from NUD and gastric ulcer by SSH

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Aug 15, 2003 (publication date) through Nov 30, 2024

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World Journal of Gastroenterology

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1007-9327

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Baishideng Publishing Group Inc, 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA

H. Pylori

World J Gastroenterol. Aug 15, 2003; 9(8): 1747-1751
Published online Aug 15, 2003. doi: 10.3748/wjg.v9.i8.1747

Table 1 Homologous analysis of some strain specific DNA sequences

Inserts	GenBank accesion No.	Homolog/genes or proteins	DNA matches
GU79	AF056496	H.pylori plasmid pHPO100/ RepA, 2e^-53	1882-2265
GU150	AE000629	Carbamoyl-phosphate synthetase, 3e^-29	1029-1229
GU185	AE000595	Putative outer membrane p1, 7e^-24	2993-3177
GU198	AE001560	Thymidylate kinase, 2e^-10	640-717
GU210	AE000590	Hypothetical protein , 3e^-33	789-396
GU212	AE000531	Type II restriction enzyme R protein, 4e^-26	1-597
GU223	AE000647	Hypothetical protein, 4e^-16	7724-8193
GU234	AE000650	Site specific DNA-methyltransferase, 3e^-54	9070-8752
GU235	AE000547	Toxin-like outer membrane protein, 2e^-64	13943-14494

Citation: Han FC, Gong M, Ng HC, Ho B. Identification of H. pylori strain specific DNA sequences between two clinical isolates from NUD and gastric ulcer by SSH. World J Gastroenterol 2003; 9(8): 1747-1751
URL: https://www.wjgnet.com/1007-9327/full/v9/i8/1747.htm
DOI: https://dx.doi.org/10.3748/wjg.v9.i8.1747