Copyright
©The Author(s) 2024.
World J Gastroenterol. Mar 28, 2024; 30(12): 1764-1776
Published online Mar 28, 2024. doi: 10.3748/wjg.v30.i12.1764
Published online Mar 28, 2024. doi: 10.3748/wjg.v30.i12.1764
Table 1 Primer sequences for qPCR
| Genes | Sequence |
| ALKBH5 | Forward 5’- CTTTGCTTCGGCTGCAAGTT -3’ |
| Reverse 5’- CCGGCGTTCCTTAATGTCCT -3’ | |
| ZKSCAN3 | Forward 5’- CAGAGTAGGGTGGAAAGCC -3’ |
| Reverse 5’- AAGGTATGAAGGTCGGGTG -3’ | |
| Primer 1 | Forward 5’- CCAGGCGGTTCTATTGC -3’ |
| Reverse 5’- TGGCTTTCCACCCTACTCT -3’ | |
| Primer 2 | Forward: 5’- CAGAGTAGGGTGGAAAGCC-3’ |
| Reverse 5’- AGGTATGAAGGTCGGGTG-3’ | |
| Primer 3 | Forward 5’- TGGTTCGGGATGGCTAG-3’ |
| Reverse 5’- AACAGCACTGCCTTGGAG-3’ | |
| β-actin | Forward 5’- GTGGCCGAGGACTTTGATTG-3’ |
| Reverse 5’- CCTGTAACAACGCATCTCATATT-3’ |
Table 2 m6A sites of ZKSCAN3 mRNA
| Number | Position | Sequence context | Confidence |
| 1 | 34 | GUGCCCCGCCCCCCGGGGUCGGACUUUCGACACUUUUGUGACUGC | High |
| 2 | 131 | ACAGCUACAGUGAAACGGGAGAACUGCUUGGUUCGGGAUGGCUAG | High |
| 3 | 180 | UCAAGGGAAAGCACAACCUUGGACUCACACUCUGCAGAGGACCAG | Very high |
| 4 | 198 | UUGGACUCACACUCUGCAGAGGACCAGAUGGAGCUACUGGUCAUA | High |
| 5 | 229 | AGCUACUGGUCAUAAAGGUGGAACAAGAAGAGGCCUCCCCCUUGG | Moderate |
| 6 | 534 | GUGGCGCUGCUGGAGUACUUGGACAGGCAGCUGGAUGACACACCU | High |
| 7 | 589 | CAGAUGAUGACGAUGGGCAGGAACUCCUUUGCUCCAAGGCAGUGC | Moderate |
| 8 | 824 | CCCAGUCCUUUCCCCCAGAUGGACAGAGCAGGAUUCAUCUCAGAU | Very high |
| 9 | 849 | GAGCAGGAUUCAUCUCAGAUGAACCUCUACAAAGAUGGAAUGCAG | Moderate |
| 10 | 906 | AGCCUGGUUUCCCUGGAUCAGGACAUGCAGACUAAGGUUAGGGAC | Very high |
| 11 | 914 | UUCCCUGGAUCAGGACAUGCAGACUAAGGUUAGGGACUUGCCUCG | Moderate |
| 12 | 927 | GACAUGCAGACUAAGGUUAGGGACUUGCCUCGAGCUGAAGAAUAC | Very high |
| 13 | 954 | CCUCGAGCUGAAGAAUACAGGGACCAAAAGCCUGAGCAGACAGUG | High |
| 14 | 971 | CAGGGACCAAAAGCCUGAGCAGACAGUGUGCUUCCUGGGUGAAGA | Low |
| 15 | 993 | ACAGUGUGCUUCCUGGGUGAAGACACUGUCCCGAUUCCUACAGGU | Low |
| 16 | 1347 | GAAAAGCCCUACGAGUGUGAUGACUGUGGGAAAACCUUCACUCAG | High |
| 17 | 1387 | CUCAGAGCUGCAGCCUCCUUGAACAUCACAGAAUUCACACUGGGG | Low |
| 18 | 1471 | GGCGUAGCUCACAUCUUCUGAGACAUCAGAGGACCCAUACUGGGG | Moderate |
| 19 | 1633 | GUAGGAUUACAAGCCUUAUUGAACACCAAAAAGUACACACUGGUG | Low |
| 20 | 1745 | GAGAAGACACACGGGGAAGAAAACUUCUGUCACAGUGACCCCUGC | Moderate |
| 21 | 1803 | GUUGGUGUUCAACUGUCAUUGAACUGAAGCCACUCUGUAGUUCUU | High |
| 22 | 1830 | AGCCACUCUGUAGUUCUUAAUGACUGCAGAAGUCAUAGGCUGGGG | Very high |
| 23 | 1985 | ACAAGAGUCCUCACCCAUUGGAACUAAAUGGGCUUCCUGACUGUC | Very high |
- Citation: Zhang T, Zhu S, Huang GW. ALKBH5 suppresses autophagic flux via N6-methyladenosine demethylation of ZKSCAN3 mRNA in acute pancreatitis. World J Gastroenterol 2024; 30(12): 1764-1776
- URL: https://www.wjgnet.com/1007-9327/full/v30/i12/1764.htm
- DOI: https://dx.doi.org/10.3748/wjg.v30.i12.1764
