Copyright
©The Author(s) 2023.
World J Gastroenterol. Feb 21, 2023; 29(7): 1202-1218
Published online Feb 21, 2023. doi: 10.3748/wjg.v29.i7.1202
Published online Feb 21, 2023. doi: 10.3748/wjg.v29.i7.1202
Table 1 List of significantly (P value < 0.05) different genera between DNA and RNA samples in the control, tumor, and tumor adjacent groups
| Increased or decreased at DNA level | |||
| H | T | Tadj | |
| H & T & Tadj | |||
| Haemophilus | Increased | Decreased | Increased |
| Methyloversatilis | Decreased | Decreased | Decreased |
| Neisseria | Increased | Increased | Increased |
| Peptostreptococcus | Increased | Increased | Increased |
| Prevotella | Increased | Increased | Increased |
| Pseudomonas | Decreased | Decreased | Decreased |
| Reyranella | Decreased | Decreased | Decreased |
| Sediminibacterium | Decreased | Decreased | Decreased |
| Staphylococcus | Decreased | Decreased | Decreased |
| Veillonella | Increased | Increased | Increased |
| H | |||
| Actinomyces | Increased | ||
| Gemella | Decreased | ||
| Helicobacter | Decreased | ||
| Streptococcus | Decreased | ||
| T & Tadj | |||
| Fusobacterium | Increased | Increased | |
| Granulicatella | Increased | Increased | |
| Porphyromonas | Increased | Increased | |
| Solobacterium | Increased | Increased | |
Table 2 List of significantly (P value < 0.05) different genera between the control and gastric cancer groups, depending on the selected study material
| T vs H | Increased or decreased in T | Tadj vs H | Increased or decreased in Tadj | ||
| DNA | RNA | DNA | RNA | ||
| Lactobacillus | Increased | Increased | Lactobacillus | Increased | Increased |
| Actinomyces | Decreased | Decreased | Actinomyces | Decreased | Decreased |
| Atopobium | Decreased | Decreased | Atopobium | Decreased | Decreased |
| Granulicatella | Decreased | Decreased | Granulicatella | Decreased | Decreased |
| Propionibacterium | Decreased | Decreased | Propionibacterium | Decreased | Decreased |
| Streptococcus | Decreased | Decreased | Streptococcus | Decreased | Decreased |
| Veillonella | Decreased | Decreased | Veillonella | Decreased | Decreased |
| Rothia | Decreased | Increased | Rothia | Decreased | Decreased |
| Clostridium sensu stricto | Increased | Leptotrichia | Decreased | ||
| Prevotella | Decreased | Prevotella | Decreased | ||
| Pseudomonas | Increased | Pseudomonas | Increased | ||
| Staphylococcus | Increased | Staphylococcus | Decreased | ||
| Gemella | Decreased | Gemella | Decreased | ||
| Methyloversatilis | Decreased | Methyloversatilis | Decreased | ||
| Parvimonas | Decreased | Parvimonas | Decreased | ||
| Reyranella | Decreased | Reyranella | Decreased | ||
| Sediminibacterium | Decreased | Sediminibacterium | Decreased | ||
- Citation: Nikitina D, Lehr K, Vilchez-Vargas R, Jonaitis LV, Urba M, Kupcinskas J, Skieceviciene J, Link A. Comparison of genomic and transcriptional microbiome analysis in gastric cancer patients and healthy individuals. World J Gastroenterol 2023; 29(7): 1202-1218
- URL: https://www.wjgnet.com/1007-9327/full/v29/i7/1202.htm
- DOI: https://dx.doi.org/10.3748/wjg.v29.i7.1202
