Review
Copyright ©The Author(s) 2021.
World J Gastroenterol. Nov 7, 2021; 27(41): 7065-7079
Published online Nov 7, 2021. doi: 10.3748/wjg.v27.i41.7065
Table 1 Coronavirus disease 2019 reported cases and deaths
Location
Cases
per 100K people
Deaths
per 100K people
United States321525319795573044175
Brazil143694236809391936186
Mexico23295341826215113169
India17636307129119789414
United Kingdom44096356598127451191
Table 2 High abundance bacterial taxa characterizing the gut microbiota dysbiosis of selected diseases
Population
Disease
Relevant taxa
Analysis
Ref.
MexicoEDf_Veillonellaceae, f_ S24-7, g_Ruminococcus, g_Bacteroides, g_Parvimonas, g_Oscillospira.MaAsLinNirmalkar et al[87], 2018
T2DM o_Bacteroidales, f_Koribacteraceae, g_Suterella, g_Roseburia, g_Pelomonas, g_Oscillospira.LEfSeChávez-Carbajal et al[85], 2020
OBf_ S24-7, g_Roseburia, g_Succinivibrio. LEfSeChávez-Carbajal et al[86], 2019
g_Lachnospira, g_Roseburia, g_Faecalibacterium.UPGMAMurugesan et al[88], 2015
MetSg_Lachnospira, g_Coprococus, g_Faecalibacterium, g_Ruminococcus, g_Megamonas.LEfSeChávez-Carbajal et al[86], 2019
United StatesHBPg_Dorea, s_Alistipes finegoldii, s_A. indistinctus.LEfSeKim et al[89], 2020
EDg_Bifidobacterium, g_Akkermansia, g_Oxalobacter.Pearson’s correlationJohnson et al[90], 2019
o_Bacteroidales, f_ Prevotellaceae, g_ Hungatella, g_Succiniclasticum.Mann Whitney UKummen et al[91], 2018
T2DMg_Bifidobacterium, g_Prevotella.Mann-Whitney nonparametric testBarengolts et al[92], 2018
OBc_Bacilli, f_Streptococcaceae, f_Lactobacillaceae, g_Streptococcus, g_Blautia.Kruskal-WallisPeters et al[93], 2018
f_Ruminococcacea, g_Prevotella, g_Gardnerella, g_Turicibacter, g_Megasphera.LEfSeSergeev et al[94], 2020
MetSg_Ruminococcus, g_Haemophilus, g_Varibaculum, g_Veillonella, g_Sarcina, g_Lactobacillus, g_Turicibacter, g_Actinomyces, g_Bifidobacterium, g_Lachnobacterium.CorrelationsTricò et al[95], 2019
g_Clostridium, g_Ruminococcus, g_Faecalibacterium, g_Oscillospira, g_Coprococcus, g_Prevotella.Compute core microbiome (95%)Zupancic et al[96], 2012
BrazilEDf_Lachnospiraceae g_Roseburia g_CoprococcusMann–Whitney USilveira-Nunes et al[97], 2020
T2DMg_Gemella g_Coprococcus g_DesulfovibrioRelative AbundanceAl Assal et al[98], 2020
OBg_Fusobacterium g_Enterococcus s_Escherichia coliFISHSarmiento et al[99], 2019
MetSp_FirmicutesRT-qPCRMiranda et al[100], 2019
Table 3 Taxa associated with immunological or inflammatory diseases
Taxa
Immunological disease
Ref.
s_Ruminococcus gnavusCrohn’s diseaseHenke et al[101], 2019
Rheumatoid arthritisZhang et al[102], 2015
s_Ruminococcus lactarisInflammatory bowel diseaseForbes et al[103], 2016
g_FaecalibacteriumMultiple sclerosisCantarel et al[104], 2015
PsoriasisZhang et al[105], 2021
Inflammatory bowel diseaseGevers et al[106], 2014
f_VeillonellaceaeMultiple sclerosisCantarel et al[104], 2015
g_CoprococusAnti-phospholipid syndromeRuff et al[107], 2015
g_Roseburia intestinalisIncreased risk of HIV infectionLibertucci and Young[108], 2019
g_ParvimonasAcute Kawasaki diseaseChen et al[109], 2020
g_MegamonasPsoriasisZhang et al[105], 2021
Systemic lupus erythematosusHevia et al[110], 2014
g_BacteroidesArthritis susceptibilityXu et al[111], 2019
f_S24-7Reduction in antibody responseYang et al[112], 2017
g_CoprococcusReduction in antibody response. Inflammatory bowel diseaseYang et al[112], 2017; Said et al[113], 2014
g_Oscillospira
g_Sutterella
g_GemellaAsthmaStiemsma et al[114], 2016
g_ClostridiumColitisGuerri et al[115], 2019
Rheumatoid arthritisForbes et al[116], 2018
g_ActinomycesRheumatoid arthritisForbes et al[116], 2018
g_StreptococcusRheumatoid arthritisAlpizar-Rodriguez[117], 2019
g_PrevotellaRheumatoid arthritis. Allergic rhinitis, AsthmaMaeda and Takeda[118], 2019
Chua et al[119], 2018
f_LachnospiraceaeRheumatoid arthritisForbes et al[116], 2018
AsthmaCherkasov et al[120], 2019
f_VeillonellaceaeAutoimmune hepatitisWei et al[121], 2020
g_VeillonellaMultiple sclerosisChen et al[122], 2016
g_BlautiaMultiple sclerosisChen et al[122], 2016
g_Dorea
g_Haemophilus
g_OscillospiraAllergiesHua et al[123], 2016
g_Succinivibrio
g_Suterella
o_Bacteroidales

  • Citation: García-Mena J, Corona-Cervantes K, Cuervo-Zanatta D, Benitez-Guerrero T, Vélez-Ixta JM, Zavala-Torres NG, Villalobos-Flores LE, Hernández-Quiroz F, Perez-Cruz C, Murugesan S, Bastida-González FG, Zárate-Segura PB. Gut microbiota in a population highly affected by obesity and type 2 diabetes and susceptibility to COVID-19. World J Gastroenterol 2021; 27(41): 7065-7079
  • URL: https://www.wjgnet.com/1007-9327/full/v27/i41/7065.htm
  • DOI: https://dx.doi.org/10.3748/wjg.v27.i41.7065