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World J Gastroenterol. Aug 28, 2009; 15(32): 3984-3991
Published online Aug 28, 2009. doi: 10.3748/wjg.15.3984
Published online Aug 28, 2009. doi: 10.3748/wjg.15.3984
Table 1 General genomic features of helicobacters and campylobacters
| Species | Helicobacter pylori | H. acinonychis | H. hepaticus | W. succinogenes | C. jejuni | C. coli | C. lari | C. upsaliensis | ||
| Strain | 26 695 | j99 | HPAG1 | Sheeba | ATCC51449 | DSM1740 | NCTC11168 | RM2228 | RM2100 | RM3195 |
| Origin | Clinical | Clinical | Clinical | Felines | Rodents | Cattle | Clinical | Chicken | Clinical | Clinical |
| Genome size (bp) | 1 667 867 | 1 643 831 | 1 596 366 | 1 553 928 | 1 799 146 | 2 110 355 | 1 641 481 | |||
| GC content (%) | 39.0 | 39.0 | - | 38.2 | 35.9 | 48.5 | 30.5 | 31.3 | 29.6 | 34.5 |
| Coding sequences | ||||||||||
| Predicted number | 1590 | 1459 | 1536 | 1611 | 1875 | 2046 | 1634 | 1764 | 1554 | 1782 |
| Coding area (%) | 91.0 | 90.8 | - | 89.7 | 93.0 | 93.0 | 94.3 | - | - | - |
| Average length (bp) | 945 | 998 | - | 865 | 1082 | 964 | 948 | - | - | - |
| Flexible genome pool | ||||||||||
| Plasmids | None | None | pHPAG1 | pHac1 | None | None | None | pCC178 | pCL46 | pCU3, pCu110 |
| Insertion elements | IS605, IS606 | IS606 | None | ISHa1675, ISHa1942, ISHa1152 | None | ISWsu1302, ISWsu1203 | None | IS605 | - | - |
| Genomic islands | cag PAI | cag PAI | cag PAI | HacGI | HHGI1 | WSUGI I and II | None | - | - | - |
- Citation: Dong QJ, Wang Q, Xin YN, Li N, Xuan SY. Comparative genomics of Helicobacter pylori. World J Gastroenterol 2009; 15(32): 3984-3991
- URL: https://www.wjgnet.com/1007-9327/full/v15/i32/3984.htm
- DOI: https://dx.doi.org/10.3748/wjg.15.3984