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For: Liang C, Zhang X, Zou J, Xu D, Su F, Ye N. Identification of miRNA from Porphyra yezoensis by high-throughput sequencing and bioinformatics analysis. PLoS One. 2010;5:e10698. [PMID: 20502668 PMCID: PMC2873431 DOI: 10.1371/journal.pone.0010698] [Citation(s) in RCA: 80] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2010] [Accepted: 04/26/2010] [Indexed: 11/29/2022]  Open
Number Cited by Other Article(s)
1
Webb J, Zhao M, Campbell AH, Paul NA, Cummins SF, Eamens AL. The microRNA Pathway of Macroalgae: Its Similarities and Differences to the Plant and Animal microRNA Pathways. Genes (Basel) 2025;16:442. [PMID: 40282402 PMCID: PMC12026948 DOI: 10.3390/genes16040442] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2025] [Revised: 03/31/2025] [Accepted: 04/05/2025] [Indexed: 04/29/2025]  Open
2
Zhang M, Cheng W, Yuan X, Wang J, Cheng T, Zhang Q. Integrated transcriptome and small RNA sequencing in revealing miRNA-mediated regulatory network of floral bud break in Prunus mume. FRONTIERS IN PLANT SCIENCE 2022;13:931454. [PMID: 35937373 PMCID: PMC9355595 DOI: 10.3389/fpls.2022.931454] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2022] [Accepted: 06/30/2022] [Indexed: 05/08/2023]
3
Zhang J, Shi J, Yuan C, Liu X, Du G, Fan R, Zhang B. MicroRNA Expression Profile Analysis of Chlamydomonas reinhardtii during Lipid Accumulation Process under Nitrogen Deprivation Stresses. Bioengineering (Basel) 2021;9:bioengineering9010006. [PMID: 35049715 PMCID: PMC8773410 DOI: 10.3390/bioengineering9010006] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2021] [Revised: 12/14/2021] [Accepted: 12/21/2021] [Indexed: 11/30/2022]  Open
4
Hajieghrari B, Farrokhi N. Plant RNA-mediated gene regulatory network. Genomics 2021;114:409-442. [PMID: 34954000 DOI: 10.1016/j.ygeno.2021.12.020] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2020] [Revised: 07/21/2021] [Accepted: 12/20/2021] [Indexed: 11/26/2022]
5
Paul S, Bravo Vázquez LA, Márquez Nafarrate M, Gutiérrez Reséndiz AI, Srivastava A, Sharma A. The regulatory activities of microRNAs in non-vascular plants: a mini review. PLANTA 2021;254:57. [PMID: 34424349 DOI: 10.1007/s00425-021-03707-z] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/10/2021] [Accepted: 08/14/2021] [Indexed: 05/21/2023]
6
Chronicles of Dolos and Apate in Plant microRNAs. Biologia (Bratisl) 2020. [DOI: 10.2478/s11756-020-00545-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
7
Yan G, Zhang J, Jiang M, Gao X, Yang H, Li L. Identification of Known and Novel MicroRNAs in Raspberry Organs Through High-Throughput Sequencing. FRONTIERS IN PLANT SCIENCE 2020;11:728. [PMID: 32582255 PMCID: PMC7284492 DOI: 10.3389/fpls.2020.00728] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/03/2020] [Accepted: 05/06/2020] [Indexed: 05/23/2023]
8
Shao J, Wang L, Liu Y, Qi Q, Wang B, Lu S, Liu C. Identification of milRNAs and their target genes in Ganoderma lucidum by high-throughput sequencing and degradome analysis. Fungal Genet Biol 2020;136:103313. [DOI: 10.1016/j.fgb.2019.103313] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2018] [Revised: 08/09/2019] [Accepted: 11/15/2019] [Indexed: 12/15/2022]
9
Wang Y, Peng M, Wang W, Chen Y, He Z, Cao J, Lin Z, Yang Z, Gong M, Yin Y. Verification of miRNAs in ginseng decoction by high-throughput sequencing and quantitative real-time PCR. Heliyon 2019;5:e01418. [PMID: 30984884 PMCID: PMC6446053 DOI: 10.1016/j.heliyon.2019.e01418] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2018] [Revised: 03/13/2019] [Accepted: 03/21/2019] [Indexed: 12/24/2022]  Open
10
Chen F, Zhang J, Chen J, Li X, Dong W, Hu J, Lin M, Liu Y, Li G, Wang Z, Zhang L. realDB: a genome and transcriptome resource for the red algae (phylum Rhodophyta). DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION 2018;2018:5055577. [PMID: 30020436 PMCID: PMC6051438 DOI: 10.1093/database/bay072] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/29/2017] [Accepted: 06/15/2018] [Indexed: 11/28/2022]
11
Xue WH, Fan ZR, Li LF, Lu JL, Ma BJ, Kan QC, Zhao J. Construction of an oesophageal cancer-specific ceRNA network based on miRNA, lncRNA, and mRNA expression data. World J Gastroenterol 2018;24:23-34. [PMID: 29358879 PMCID: PMC5757122 DOI: 10.3748/wjg.v24.i1.23] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/13/2017] [Revised: 11/07/2017] [Accepted: 11/27/2017] [Indexed: 02/06/2023]  Open
12
Li Q, Deng C, Xia Y, Kong L, Zhang H, Zhang S, Wang J. Identification of novel miRNAs and miRNA expression profiling in embryogenic tissues of Picea balfouriana treated by 6-benzylaminopurine. PLoS One 2017;12:e0176112. [PMID: 28486552 PMCID: PMC5423612 DOI: 10.1371/journal.pone.0176112] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2016] [Accepted: 04/05/2017] [Indexed: 11/18/2022]  Open
13
Gomes F, Watanabe L, Nozawa S, Oliveira L, Cardoso J, Vianez J, Nunes M, Schneider H, Sampaio I. Identification and characterization of the expression profile of the microRNAs in the Amazon species Colossoma macropomum by next generation sequencing. Genomics 2017;109:67-74. [PMID: 28192178 DOI: 10.1016/j.ygeno.2017.02.001] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2016] [Revised: 02/06/2017] [Accepted: 02/08/2017] [Indexed: 01/20/2023]
14
Ordóñez-Baquera PL, González-Rodríguez E, Aguado-Santacruz GA, Rascón-Cruz Q, Conesa A, Moreno-Brito V, Echavarria R, Dominguez-Viveros J. Identification of miRNA from Bouteloua gracilis, a drought tolerant grass, by deep sequencing and their in silico analysis. Comput Biol Chem 2017;66:26-35. [DOI: 10.1016/j.compbiolchem.2016.11.001] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2016] [Revised: 10/04/2016] [Accepted: 11/04/2016] [Indexed: 11/26/2022]
15
Zhou R, Wang Q, Jiang F, Cao X, Sun M, Liu M, Wu Z. Identification of miRNAs and their targets in wild tomato at moderately and acutely elevated temperatures by high-throughput sequencing and degradome analysis. Sci Rep 2016;6:33777. [PMID: 27653374 PMCID: PMC5031959 DOI: 10.1038/srep33777] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2015] [Accepted: 09/02/2016] [Indexed: 12/22/2022]  Open
16
Wu Y, Guo J, Cai Y, Gong X, Xiong X, Qi W, Pang Q, Wang X, Wang Y. Genome-wide identification and characterization of Eutrema salsugineum microRNAs for salt tolerance. PHYSIOLOGIA PLANTARUM 2016;157:453-68. [PMID: 26806325 DOI: 10.1111/ppl.12419] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2015] [Revised: 11/12/2015] [Accepted: 12/10/2015] [Indexed: 05/23/2023]
17
Zhang X, Gamarra J, Castro S, Carrasco E, Hernandez A, Mock T, Hadaegh AR, Read BA. Characterization of the Small RNA Transcriptome of the Marine Coccolithophorid, Emiliania huxleyi. PLoS One 2016;11:e0154279. [PMID: 27101007 PMCID: PMC4839659 DOI: 10.1371/journal.pone.0154279] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2014] [Accepted: 04/11/2016] [Indexed: 12/31/2022]  Open
18
Sun H, Zhou Z, Dong Y, Yang A, Jiang J, Chen Z, Guan X, Wang B, Gao S, Jiang B. Expression analysis of microRNAs related to the skin ulceration syndrome of sea cucumber Apostichopus japonicus. FISH & SHELLFISH IMMUNOLOGY 2016;49:205-212. [PMID: 26723265 DOI: 10.1016/j.fsi.2015.12.036] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2015] [Revised: 12/20/2015] [Accepted: 12/21/2015] [Indexed: 06/05/2023]
19
Guo R, Chen X, Lin Y, Xu X, Thu MK, Lai Z. Identification of Novel and Conserved miRNAs in Leaves of In vitro Grown Citrus reticulata "Lugan" Plantlets by Solexa Sequencing. FRONTIERS IN PLANT SCIENCE 2016;6:1212. [PMID: 26779240 PMCID: PMC4705231 DOI: 10.3389/fpls.2015.01212] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2015] [Accepted: 12/16/2015] [Indexed: 05/23/2023]
20
Jian H, Wang J, Wang T, Wei L, Li J, Liu L. Identification of Rapeseed MicroRNAs Involved in Early Stage Seed Germination under Salt and Drought Stresses. FRONTIERS IN PLANT SCIENCE 2016;7:658. [PMID: 27242859 PMCID: PMC4865509 DOI: 10.3389/fpls.2016.00658] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2015] [Accepted: 04/29/2016] [Indexed: 05/18/2023]
21
Bukhari SAH, Shang S, Zhang M, Zheng W, Zhang G, Wang TZ, Shamsi IH, Wu F. Genome-wide identification of chromium stress-responsive micro RNAs and their target genes in tobacco (Nicotiana tabacum) roots. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY 2015;34:2573-82. [PMID: 26053264 DOI: 10.1002/etc.3097] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2014] [Revised: 04/07/2015] [Accepted: 05/31/2015] [Indexed: 05/29/2023]
22
Yusuf NHM, Ong WD, Redwan RM, Latip MA, Kumar SV. Discovery of precursor and mature microRNAs and their putative gene targets using high-throughput sequencing in pineapple (Ananas comosus var. comosus). Gene 2015;571:71-80. [DOI: 10.1016/j.gene.2015.06.050] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2015] [Revised: 06/05/2015] [Accepted: 06/19/2015] [Indexed: 01/01/2023]
23
Geng H, Sui Z, Zhang S, Du Q, Ren Y, Liu Y, Kong F, Zhong J, Ma Q. Identification of microRNAs in the Toxigenic Dinoflagellate Alexandrium catenella by High-Throughput Illumina Sequencing and Bioinformatic Analysis. PLoS One 2015;10:e0138709. [PMID: 26398216 PMCID: PMC4580472 DOI: 10.1371/journal.pone.0138709] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2015] [Accepted: 09/02/2015] [Indexed: 12/19/2022]  Open
24
Ye X, Song T, Liu C, Feng H, Liu Z. Identification of fruit related microRNAs in cucumber (Cucumis sativus L.) using high-throughput sequencing technology. Hereditas 2015;151:220-8. [PMID: 25588308 DOI: 10.1111/hrd2.00057] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2014] [Accepted: 12/09/2014] [Indexed: 12/01/2022]  Open
25
Zhang F, Dong W, Huang L, Song A, Wang H, Fang W, Chen F, Teng N. Identification of MicroRNAs and their Targets Associated with Embryo Abortion during Chrysanthemum Cross Breeding via High-Throughput Sequencing. PLoS One 2015;10:e0124371. [PMID: 25909659 PMCID: PMC4409343 DOI: 10.1371/journal.pone.0124371] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2014] [Accepted: 02/27/2015] [Indexed: 12/22/2022]  Open
26
Xie F, Zhang B. microRNA evolution and expression analysis in polyploidized cotton genome. PLANT BIOTECHNOLOGY JOURNAL 2015;13:421-34. [PMID: 25561162 DOI: 10.1111/pbi.12295] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2014] [Revised: 10/16/2014] [Accepted: 10/20/2014] [Indexed: 05/28/2023]
27
Valach M, Burger G, Gray MW, Lang BF. Widespread occurrence of organelle genome-encoded 5S rRNAs including permuted molecules. Nucleic Acids Res 2014;42:13764-77. [PMID: 25429974 PMCID: PMC4267664 DOI: 10.1093/nar/gku1266] [Citation(s) in RCA: 109] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2014] [Revised: 11/14/2014] [Accepted: 11/17/2014] [Indexed: 11/13/2022]  Open
28
Tian Y, Tian Y, Luo X, Zhou T, Huang Z, Liu Y, Qiu Y, Hou B, Sun D, Deng H, Qian S, Yao K. Identification and characterization of microRNAs related to salt stress in broccoli, using high-throughput sequencing and bioinformatics analysis. BMC PLANT BIOLOGY 2014;14:226. [PMID: 25181943 PMCID: PMC4167151 DOI: 10.1186/s12870-014-0226-2] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/25/2014] [Accepted: 08/12/2014] [Indexed: 05/20/2023]
29
Rogato A, Richard H, Sarazin A, Voss B, Cheminant Navarro S, Champeimont R, Navarro L, Carbone A, Hess WR, Falciatore A. The diversity of small non-coding RNAs in the diatom Phaeodactylum tricornutum. BMC Genomics 2014;15:698. [PMID: 25142710 PMCID: PMC4247016 DOI: 10.1186/1471-2164-15-698] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2014] [Accepted: 07/30/2014] [Indexed: 11/10/2022]  Open
30
Li J, Cai Y, Ye L, Wang S, Che J, You Z, Yu J, Zhong B. MicroRNA expression profiling of the fifth-instar posterior silk gland of Bombyx mori. BMC Genomics 2014;15:410. [PMID: 24885170 PMCID: PMC4045974 DOI: 10.1186/1471-2164-15-410] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2013] [Accepted: 05/07/2014] [Indexed: 11/10/2022]  Open
31
Sha Z, Gong G, Wang S, Lu Y, Wang L, Wang Q, Chen S. Identification and characterization of Cynoglossus semilaevis microRNA response to Vibrio anguillarum infection through high-throughput sequencing. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY 2014;44:59-69. [PMID: 24296438 DOI: 10.1016/j.dci.2013.11.014] [Citation(s) in RCA: 56] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/04/2013] [Revised: 11/25/2013] [Accepted: 11/25/2013] [Indexed: 06/02/2023]
32
Characterization of conserved microRNAs from five different cucurbit species using computational and experimental analysis. Biochimie 2014;102:137-44. [PMID: 24657600 DOI: 10.1016/j.biochi.2014.03.002] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2013] [Accepted: 03/04/2014] [Indexed: 10/25/2022]
33
Chen F, Li J, Zhang H, Xu J, Tao Z, Shen J, Shen J, Lu L, Li C. Identification of differentially expressed known and novel miRNAs in broodiness of goose. Mol Biol Rep 2014;41:2767-77. [DOI: 10.1007/s11033-014-3131-8] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2013] [Accepted: 01/11/2014] [Indexed: 01/02/2023]
34
Gu Y, Liu Y, Zhang J, Liu H, Hu Y, Du H, Li Y, Chen J, Wei B, Huang Y. Identification and characterization of microRNAs in the developing maize endosperm. Genomics 2013;102:472-8. [PMID: 24021532 DOI: 10.1016/j.ygeno.2013.08.007] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2012] [Revised: 08/04/2013] [Accepted: 08/22/2013] [Indexed: 11/16/2022]
35
Yang L, Jue D, Li W, Zhang R, Chen M, Yang Q. Identification of MiRNA from eggplant (Solanum melongena L.) by small RNA deep sequencing and their response to Verticillium dahliae infection. PLoS One 2013;8:e72840. [PMID: 24015279 PMCID: PMC3754920 DOI: 10.1371/journal.pone.0072840] [Citation(s) in RCA: 52] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2012] [Accepted: 07/16/2013] [Indexed: 12/19/2022]  Open
36
Gross J, Wajid S, Price DC, Zelzion E, Li J, Chan CX, Bhattacharya D. Evidence for widespread exonic small RNAs in the glaucophyte alga Cyanophora paradoxa. PLoS One 2013;8:e67669. [PMID: 23844054 PMCID: PMC3700990 DOI: 10.1371/journal.pone.0067669] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2013] [Accepted: 05/21/2013] [Indexed: 12/12/2022]  Open
37
Hwang DG, Park JH, Lim JY, Kim D, Choi Y, Kim S, Reeves G, Yeom SI, Lee JS, Park M, Kim S, Choi IY, Choi D, Shin C. The hot pepper (Capsicum annuum) microRNA transcriptome reveals novel and conserved targets: a foundation for understanding MicroRNA functional roles in hot pepper. PLoS One 2013;8:e64238. [PMID: 23737975 PMCID: PMC3667847 DOI: 10.1371/journal.pone.0064238] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2012] [Accepted: 04/10/2013] [Indexed: 01/26/2023]  Open
38
Lin Y, Lai Z. Comparative analysis reveals dynamic changes in miRNAs and their targets and expression during somatic embryogenesis in longan (Dimocarpus longan Lour.). PLoS One 2013;8:e60337. [PMID: 23593197 PMCID: PMC3623967 DOI: 10.1371/journal.pone.0060337] [Citation(s) in RCA: 81] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2012] [Accepted: 02/25/2013] [Indexed: 01/27/2023]  Open
39
Xie C, Li B, Xu Y, Ji D, Chen C. Characterization of the global transcriptome for Pyropia haitanensis (Bangiales, Rhodophyta) and development of cSSR markers. BMC Genomics 2013;14:107. [PMID: 23414227 PMCID: PMC3626662 DOI: 10.1186/1471-2164-14-107] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2012] [Accepted: 02/02/2013] [Indexed: 01/12/2023]  Open
40
Hao DC, Yang L, Xiao PG, Liu M. Identification of Taxus microRNAs and their targets with high-throughput sequencing and degradome analysis. PHYSIOLOGIA PLANTARUM 2012;146:388-403. [PMID: 22708792 DOI: 10.1111/j.1399-3054.2012.01668.x] [Citation(s) in RCA: 59] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
41
Bozorov TA, Baldwin IT, Kim SG. Identification and profiling of miRNAs during herbivory reveals jasmonate-dependent and -independent patterns of accumulation in Nicotiana attenuata. BMC PLANT BIOLOGY 2012;12:209. [PMID: 23134682 PMCID: PMC3502350 DOI: 10.1186/1471-2229-12-209] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2012] [Accepted: 11/04/2012] [Indexed: 05/20/2023]
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Mandhan V, Kaur J, Singh K. smRNAome profiling to identify conserved and novel microRNAs in Stevia rebaudiana Bertoni. BMC PLANT BIOLOGY 2012;12:197. [PMID: 23116282 PMCID: PMC3502355 DOI: 10.1186/1471-2229-12-197] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2012] [Accepted: 10/29/2012] [Indexed: 05/30/2023]
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Comparative Analysis of MicroRNAs between Sporophyte and Gametophyte of Porphyra yezoensis. Comp Funct Genomics 2012;2012:912843. [PMID: 23055822 PMCID: PMC3463926 DOI: 10.1155/2012/912843] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2012] [Revised: 08/06/2012] [Accepted: 08/22/2012] [Indexed: 01/07/2023]  Open
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Wang K, Li M, Gao F, Li S, Zhu Y, Yang P. Identification of conserved and novel microRNAs from Liriodendron chinense floral tissues. PLoS One 2012;7:e44696. [PMID: 23028583 PMCID: PMC3445533 DOI: 10.1371/journal.pone.0044696] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2012] [Accepted: 08/09/2012] [Indexed: 12/02/2022]  Open
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Stiller JW, Perry J, Rymarquis LA, Accerbi M, Green PJ, Prochnik S, Lindquist E, Chan CX, Yarish C, Lin S, Zhuang Y, Blouin NA, Brawley SH. MAJOR DEVELOPMENTAL REGULATORS AND THEIR EXPRESSION IN TWO CLOSELY RELATED SPECIES OF PORPHYRA (RHODOPHYTA)(1). JOURNAL OF PHYCOLOGY 2012;48:883-96. [PMID: 27008999 DOI: 10.1111/j.1529-8817.2012.01138.x] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
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Liu Q, Zhang H. Molecular identification and analysis of arsenite stress-responsive miRNAs in rice. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2012;60:6524-36. [PMID: 22712679 DOI: 10.1021/jf300724t] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
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Wang J, Yang X, Xu H, Chi X, Zhang M, Hou X. Identification and characterization of microRNAs and their target genes in Brassica oleracea. Gene 2012;505:300-8. [PMID: 22688123 DOI: 10.1016/j.gene.2012.06.002] [Citation(s) in RCA: 59] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2012] [Revised: 05/18/2012] [Accepted: 06/02/2012] [Indexed: 12/23/2022]
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Liu Q. Novel miRNAs in the control of arsenite levels in rice. Funct Integr Genomics 2012;12:649-58. [DOI: 10.1007/s10142-012-0282-3] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2011] [Revised: 04/01/2012] [Accepted: 04/09/2012] [Indexed: 01/08/2023]
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Wan LC, Zhang H, Lu S, Zhang L, Qiu Z, Zhao Y, Zeng QY, Lin J. Transcriptome-wide identification and characterization of miRNAs from Pinus densata. BMC Genomics 2012;13:132. [PMID: 22480283 PMCID: PMC3347991 DOI: 10.1186/1471-2164-13-132] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2011] [Accepted: 04/06/2012] [Indexed: 11/18/2022]  Open
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Wang C, Han J, Liu C, Kibet KN, Kayesh E, Shangguan L, Li X, Fang J. Identification of microRNAs from Amur grape (Vitis amurensis Rupr.) by deep sequencing and analysis of microRNA variations with bioinformatics. BMC Genomics 2012. [PMID: 22455456 DOI: 10.1186/1471‐2164‐13‐122] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]  Open
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