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Sittiwong W, Dankulchai P, Wongsuwan P, Prasartseree T, Thaweerat W, Thornsri N, Tuntapakul P. Pre-Treatment and Pre-Brachytherapy MRI first-order Radiomic Features by a Commercial software as survival predictors in radiotherapy for cervical cancer Objectives. Clin Transl Radiat Oncol 2025; 53:100965. [PMID: 40331124 PMCID: PMC12051114 DOI: 10.1016/j.ctro.2025.100965] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2024] [Revised: 01/18/2025] [Accepted: 04/15/2025] [Indexed: 05/08/2025] Open
Abstract
Materials and Methods The study included 100 patients with LACC who underwent definitive CCRT with IMRT/VMAT technique followed by 3D-IGABT. MRI-based contouring included T2WI and DWI images for primary tumor (GTVp) and lymph nodes (GTVn). The contours were imported to MIM software to extract first-order radiomic features. Radiomic values from pre-treatment (PreRx), pre-brachytherapy (PreBT), differences between PreRx and PreBT (Diff) radiomic and clinical factors were analyzed using univariate and multivariate Cox regression analysis. Predictive models of PFS, LRFS, DMFS, and OS were created along with the optimism index and calibration plot. Results The median follow-up time was 24.5 months. The 2-year of PFS, LRFS, DMFS, and OS rates were 71, 88.6, 83.1, and 83.5 %, respectively. For all clinical outcomes, CF + RF combined from PreRx and PreBT resulted in the highest Harrell's C-index compared with the CF or RF alone. Compare with Diff models, models from PreRx and PreBT resulted in higher Harrell's C-index. The C-indexes from the CF + RF model from PreRx and PreBT for PFS, LRFS, DMFS, and OS were 0.739, 0.873, 0.830 and 0.967 with the optimism indexes of 0.312, 0.381, 0.316, and 0.242, respectively. Conclusion Radiomic features from the first-order statistics added values to clinical factors to predict the outcomes after CCRT. The highest prediction model performance was for the combined clinical and radiomics from PreRx and PreBT.
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Affiliation(s)
- Wiwatchai Sittiwong
- Division of Radiation Oncology, Department of Radiology, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand
| | - Pittaya Dankulchai
- Division of Radiation Oncology, Department of Radiology, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand
| | - Pitchayut Wongsuwan
- Division of Radiation Oncology, Department of Radiology, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand
| | - Tissana Prasartseree
- Division of Radiation Oncology, Department of Radiology, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand
| | - Wajana Thaweerat
- Division of Radiation Oncology, Department of Radiology, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand
| | - Nerisa Thornsri
- Research Unit, Faculty of Medicine Siriraj Hospital, Bangkok, Thailand
| | - Pongpop Tuntapakul
- Division of Radiation Oncology, Department of Radiology, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand
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Gaudio M, Vatteroni G, De Sanctis R, Gerosa R, Benvenuti C, Canzian J, Jacobs F, Saltalamacchia G, Rizzo G, Pedrazzoli P, Santoro A, Bernardi D, Zambelli A. Incorporating radiomic MRI models for presurgical response assessment in patients with early breast cancer undergoing neoadjuvant systemic therapy: Collaborative insights from breast oncologists and radiologists. Crit Rev Oncol Hematol 2025; 210:104681. [PMID: 40058742 DOI: 10.1016/j.critrevonc.2025.104681] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2024] [Revised: 02/23/2025] [Accepted: 02/25/2025] [Indexed: 03/18/2025] Open
Abstract
The assessment of neoadjuvant treatment's response is critical for selecting the most suitable therapeutic options for patients with breast cancer to reduce the need for invasive local therapies. Breast magnetic resonance imaging (MRI) is so far one of the most accurate approaches for assessing pathological complete response, although this is limited by the qualitative and subjective nature of radiologists' assessment, often making it insufficient for deciding whether to forgo additional locoregional therapy measures. To increase the accuracy and prediction of radiomic MRI with the aid of machine learning models and deep learning methods, as part of artificial intelligence, have been used to analyse the different subtypes of breast cancer and the specific changes observed before and after therapy. This review discusses recent advancements in radiomic MRI models for presurgical response assessment for patients with early breast cancer receiving preoperative treatments, with a focus on their implications for clinical practice.
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Affiliation(s)
- Mariangela Gaudio
- IRCCS Humanitas Research Hospital, Via Manzoni 56, Rozzano, Milan 20089, Italy; Department of Biomedical Sciences, Humanitas University, Via Rita Levi Montalcini 4, Pieve Emanuele, Milan 20090, Italy
| | - Giulia Vatteroni
- Department of Biomedical Sciences, Humanitas University, Via Rita Levi Montalcini 4, Pieve Emanuele, Milan 20090, Italy
| | - Rita De Sanctis
- IRCCS Humanitas Research Hospital, Via Manzoni 56, Rozzano, Milan 20089, Italy; Department of Biomedical Sciences, Humanitas University, Via Rita Levi Montalcini 4, Pieve Emanuele, Milan 20090, Italy.
| | - Riccardo Gerosa
- IRCCS Humanitas Research Hospital, Via Manzoni 56, Rozzano, Milan 20089, Italy; Department of Biomedical Sciences, Humanitas University, Via Rita Levi Montalcini 4, Pieve Emanuele, Milan 20090, Italy
| | - Chiara Benvenuti
- IRCCS Humanitas Research Hospital, Via Manzoni 56, Rozzano, Milan 20089, Italy; Department of Biomedical Sciences, Humanitas University, Via Rita Levi Montalcini 4, Pieve Emanuele, Milan 20090, Italy
| | - Jacopo Canzian
- IRCCS Humanitas Research Hospital, Via Manzoni 56, Rozzano, Milan 20089, Italy; Department of Biomedical Sciences, Humanitas University, Via Rita Levi Montalcini 4, Pieve Emanuele, Milan 20090, Italy
| | - Flavia Jacobs
- IRCCS Humanitas Research Hospital, Via Manzoni 56, Rozzano, Milan 20089, Italy
| | | | - Gianpiero Rizzo
- Medical Oncology Unit, Fondazione IRCCS Policlinico San Matteo, Pavia, Italy; Department of Internal Medicine and Medical Therapy, University of Pavia, Pavia, Italy
| | - Paolo Pedrazzoli
- Medical Oncology Unit, Fondazione IRCCS Policlinico San Matteo, Pavia, Italy; Department of Internal Medicine and Medical Therapy, University of Pavia, Pavia, Italy
| | - Armando Santoro
- IRCCS Humanitas Research Hospital, Via Manzoni 56, Rozzano, Milan 20089, Italy; Department of Biomedical Sciences, Humanitas University, Via Rita Levi Montalcini 4, Pieve Emanuele, Milan 20090, Italy
| | - Daniela Bernardi
- IRCCS Humanitas Research Hospital, Via Manzoni 56, Rozzano, Milan 20089, Italy; Department of Biomedical Sciences, Humanitas University, Via Rita Levi Montalcini 4, Pieve Emanuele, Milan 20090, Italy
| | - Alberto Zambelli
- IRCCS Humanitas Research Hospital, Via Manzoni 56, Rozzano, Milan 20089, Italy; Department of Biomedical Sciences, Humanitas University, Via Rita Levi Montalcini 4, Pieve Emanuele, Milan 20090, Italy
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Sun J, Wu PY, Shen F, Chen X, She J, Luo M, Feng F, Zheng D. Deep learning models based on multiparametric magnetic resonance imaging and clinical parameters for identifying synchronous liver metastases from rectal cancer. BMC Med Imaging 2025; 25:173. [PMID: 40389920 PMCID: PMC12090396 DOI: 10.1186/s12880-025-01692-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2024] [Accepted: 04/25/2025] [Indexed: 05/21/2025] Open
Abstract
OBJECTIVES To establish and validate deep learning (DL) models based on pre-treatment multiparametric magnetic resonance imaging (MRI) images of primary rectal cancer and basic clinical data for the prediction of synchronous liver metastases (SLM) in patients with Rectal cancer (RC). METHODS In this retrospective study, 176 and 31 patients with RC who underwent multiparametric MRI from two centers were enrolled in the primary and external validation cohorts, respectively. Clinical factors, including sex, primary tumor site, CEA level, and CA199 level were assessed. A clinical feature (CF) model was first developed by multivariate logistic regression, then two residual network DL models were constructed based on multiparametric MRI of primary cancer with or without CF incorporation. Finally, the SLM prediction models were validated by 5-fold cross-validation and external validation. The performance of the models was evaluated by decision curve analysis (DCA) and receiver operating characteristic (ROC) analysis. RESULTS Among three SLM prediction models, the Combined DL model integrating primary tumor MRI and basic clinical data achieved the best performance (AUC = 0.887 in primary study cohort; AUC = 0.876 in the external validation cohort). In the primary study cohort, the CF model, MRI DL model, and Combined DL model achieved AUCs of 0.816 (95% CI: 0.750, 0.881), 0.788 (95% CI: 0.720, 0.857), and 0.887 (95% CI: 0.834, 0.940) respectively. In the external validation cohort, the CF model, DL model without CF, and DL model with CF achieved AUCs of 0.824 (95% CI: 0.664, 0.984), 0.662 (95% CI: 0.461, 0.863), and 0.876 (95% CI: 0.728, 1.000), respectively. CONCLUSION The combined DL model demonstrates promising potential to predict SLM in patients with RC, thereby making individualized imaging test strategies. CLINICAL RELEVANCE STATEMENT Accurate synchronous liver metastasis (SLM) risk stratification is important for treatment planning and prognosis improvement. The proposed DL signature may be employed to better understand an individual patient's SLM risk, aiding in treatment planning and selection of further imaging examinations to personalize clinical decisions. CLINICAL TRIAL NUMBER Not applicable.
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Affiliation(s)
- Jing Sun
- Department of Radiology, Clinical Oncology School of Fujian Medical University, Fujian Cancer Hospital, No. 420, Fuma Road, Jin'an District, Fuzhou, Fujian, 350014, China
| | | | - Fangmin Shen
- Department of Radiology, Clinical Oncology School of Fujian Medical University, Fujian Cancer Hospital, No. 420, Fuma Road, Jin'an District, Fuzhou, Fujian, 350014, China
| | - Xingfa Chen
- Department of Radiology, Clinical Oncology School of Fujian Medical University, Fujian Cancer Hospital, No. 420, Fuma Road, Jin'an District, Fuzhou, Fujian, 350014, China
| | - Jieqiong She
- Department of Radiation Oncology, Fujian Medical University Union Hospital, Fuzhou, Fujian, China
| | - Mingcong Luo
- Department of Radiology, Fujian Medical University Union Hospital, Fuzhou, Fujian, China
| | - Feifei Feng
- Department of Radiology, Clinical Oncology School of Fujian Medical University, Fujian Cancer Hospital, No. 420, Fuma Road, Jin'an District, Fuzhou, Fujian, 350014, China
| | - Dechun Zheng
- Department of Radiology, Clinical Oncology School of Fujian Medical University, Fujian Cancer Hospital, No. 420, Fuma Road, Jin'an District, Fuzhou, Fujian, 350014, China.
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Shin HB, Sheen H, Oh JH, Choi YE, Sung K, Kim HJ. Evaluating feature extraction reproducibility across image biomarker standardization initiative-compliant radiomics platforms using a digital phantom. J Appl Clin Med Phys 2025:e70110. [PMID: 40353843 DOI: 10.1002/acm2.70110] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2024] [Revised: 03/27/2025] [Accepted: 04/07/2025] [Indexed: 05/14/2025] Open
Abstract
BACKGROUND The aim of this study was to thoroughly analyze the reproducibility of radiomics feature extraction across three Image Biomarker Standardization Initiative (IBSI)-compliant platforms using a digital phantom for benchmarking. It uncovers high consistency among common features while also pointing out the necessity for standardization in computational algorithms and mathematical definitions due to unique platform-specific features. METHODS We selected three widely used radiomics platforms: LIFEx, Computational Environment for Radiological Research (CERR), and PyRadiomics. Using the IBSI digital phantom, we performed a comparative analysis to extract and benchmark radiomics features. The study design included testing each platform's ability to consistently reproduce radiomics features, with statistical analyses to assess the variability and agreement among the platforms. RESULTS The results indicated varying levels of feature reproducibility across the platforms. Although some features showed high consistency, others varied significantly, highlighting the need for standardized computational algorithms. Specifically, LIFEx and PyRadiomics performed consistently well across many features, whereas CERR showed greater variability in certain feature categories than LIFEx and PyRadiomics. CONCLUSION The study findings highlight the need for harmonized feature calculation methods to enhance the reliability and clinical usefulness of radiomics. Additionally, this study recommends incorporating clinical data and establishing benchmarking procedures in future studies to enhance the role of radiomics in personalized medicine.
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Affiliation(s)
- Han-Back Shin
- Department of Radiation Oncology, Gachon University Gil Medical Center, Incheon, Republic of Korea
| | - Heesoon Sheen
- Department of Health Sciences and Technology, Samsung Advanced Institute for Health Sciences & Technology, Sungkyunkwan University, Seoul, Republic of Korea
- High-Energy Physics Center, Chung-Ang University, Seoul, Republic of Korea
| | - Jang-Hoon Oh
- Department of Radiology, Kyung Hee University Hospital, Kyung Hee University College of Medicine, Seoul, Republic of Korea
| | - Young Eun Choi
- Department of Radiation Oncology, Gachon University Gil Medical Center, Incheon, Republic of Korea
| | - Kihoon Sung
- Department of Radiation Oncology, Gil Medical Center, Gachon University College of Medicine, Incheon, Republic of Korea
| | - Hyun Ju Kim
- Department of Radiation Oncology, Gil Medical Center, Gachon University College of Medicine, Incheon, Republic of Korea
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Salimi M, Houshi S, Gholamrezanezhad A, Vadipour P, Seifi S. Radiomics-based machine learning in prediction of response to neoadjuvant chemotherapy in osteosarcoma: A systematic review and meta-analysis. Clin Imaging 2025; 123:110494. [PMID: 40349577 DOI: 10.1016/j.clinimag.2025.110494] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2025] [Revised: 05/03/2025] [Accepted: 05/07/2025] [Indexed: 05/14/2025]
Abstract
BACKGROUND AND AIMS Osteosarcoma (OS) is the most common primary bone malignancy, and neoadjuvant chemotherapy (NAC) improves survival rates. However, OS heterogeneity results in variable treatment responses, highlighting the need for reliable, non-invasive tools to predict NAC response. Radiomics-based machine learning (ML) offers potential for identifying imaging biomarkers to predict treatment outcomes. This systematic review and meta-analysis evaluated the accuracy and reliability of radiomics models for predicting NAC response in OS. METHODS A systematic search was conducted in PubMed, Embase, Scopus, and Web of Science up to November 2024. Studies using radiomics-based ML for NAC response prediction in OS were included. Pooled sensitivity, specificity, and AUC for training and validation cohorts were calculated using bivariate random-effects modeling, with clinical-combined models analyzed separately. Quality assessment was performed using the QUADAS-2 tool, radiomics quality score (RQS), and METRICS scores. RESULTS Sixteen studies were included, with 63 % using MRI and 37 % using CT. Twelve studies, comprising 1639 participants, were included in the meta-analysis. Pooled metrics for training cohorts showed an AUC of 0.93, sensitivity of 0.89, and specificity of 0.85. Validation cohorts achieved an AUC of 0.87, sensitivity of 0.81, and specificity of 0.82. Clinical-combined models outperformed radiomics-only models. The mean RQS score was 9.44 ± 3.41, and the mean METRICS score was 60.8 % ± 17.4 %. CONCLUSION Radiomics-based ML shows promise for predicting NAC response in OS, especially when combined with clinical indicators. However, limitations in external validation and methodological consistency must be addressed.
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Affiliation(s)
- Mohsen Salimi
- Research Center of Thoracic Oncology (RCTO), National Research Institute of Tuberculosis and Lung Diseases (NRITLD), Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Shakiba Houshi
- Isfahan Neurosciences Research Center, Isfahan University of Medical Sciences, Isfahan, Iran
| | - Ali Gholamrezanezhad
- Department of Radiology, Keck School of Medicine, University of Southern California (USC), Los Angeles, CA, USA
| | - Pouria Vadipour
- Western Michigan University Homer Stryker M.D. School of Medicine, Kalamazoo, MI, USA
| | - Sharareh Seifi
- Research Center of Thoracic Oncology (RCTO), National Research Institute of Tuberculosis and Lung Diseases (NRITLD), Shahid Beheshti University of Medical Sciences, Tehran, Iran.
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Noortman WA, Vriens D, Bussink J, Meijer TWH, Aarntzen EHJG, Deroose CM, Lhommel R, Aide N, Le Tourneau C, de Koster EJ, Oyen WJG, Triemstra L, Ruurda JP, Vegt E, de Geus-Oei LF, van Velden FHP. Multicollinearity and redundancy of the PET radiomic feature set. Eur Radiol 2025:10.1007/s00330-025-11637-7. [PMID: 40332568 DOI: 10.1007/s00330-025-11637-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2024] [Revised: 04/02/2025] [Accepted: 04/07/2025] [Indexed: 05/08/2025]
Abstract
INTRODUCTION The aim of this study was to map multicollinearity of the radiomic feature set in five independent [18F]FDG-PET cohorts with different tumour types and identify generalizable non-redundant features. METHODS Five [18F]FDG-PET radiomic cohorts were analysed: non-small cell lung carcinomas (N = 35), pheochromocytomas and paragangliomas (N = 40), head and neck squamous cell carcinomas (N = 54), [18F]FDG-positive thyroid nodules with indeterminate cytology (N = 84), and gastric carcinomas (N = 206). Lesions were delineated, and 105 radiomic features were extracted using PyRradiomics. In every cohort, Spearman's rank correlation coefficient (ρ) matrices of features were calculated to determine which features showed (very) strong (ρ > 0.7 and ρ > 0.9) correlations with any other feature in all five cohorts. Cluster analysis of an averaged correlation matrix for all cohorts was performed at a threshold of ρ = 0.7 and ρ = 0.9. For each cluster, a representative, non-redundant feature was selected. RESULTS Seventy-two and 90 out of 105 features showed a (very) strong correlation with another feature in the correlation matrix in all five cohorts. Cluster analysis resulted in 35 and 15 non-redundant features at thresholds of ρ = 0.9 and ρ = 0.7, including 6 and 3 shape features, 4 and 2 intensity features, and 25 and 10 texture features, respectively. Seventy or 90 redundant features could be omitted at these thresholds, respectively. CONCLUSION At least two-thirds of the radiomic feature set could be omitted because of strong multicollinearity in multiple independent cohorts. More redundant features could be identified using a less conservative threshold. Future research should indicate whether multicollinearity of the radiomic feature set is similar for other radiopharmaceuticals and imaging modalities. KEY POINTS Question Radiomic feature sets contain many strongly correlating features, which results in statistical challenges. Findings Analysis of the correlation matrices showed that the same radiomic features were strongly correlated in five independent [18F]FDG-PET cohorts with different tumour types. Clinical relevance At least two-thirds of the radiomic feature set could be omitted, because of strong multicollinearity. More redundant features could be identified using a less conservative threshold.
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Affiliation(s)
- Wyanne A Noortman
- Department of Radiology, Section of Nuclear Medicine, Leiden University Medical Center, Leiden, The Netherlands.
- Department of Medical Oncology, University Medical Center Groningen, Groningen, The Netherlands.
| | - Dennis Vriens
- Department of Medical Imaging, Radboud University Medical Center, Nijmegen, The Netherlands
| | - Johan Bussink
- Department of Radiation Oncology, Radboud University Medical Center, Nijmegen, The Netherlands
| | - Tineke W H Meijer
- Department of Radiation Oncology, University Medical Center Groningen, Groningen, The Netherlands
| | - Erik H J G Aarntzen
- Department of Medical Imaging, Radboud University Medical Center, Nijmegen, The Netherlands
- Department of Nuclear Medicine and Molecular Imaging, University Medical Center Groningen, Groningen, The Netherlands
- Department of Nuclear Medicine, Eberhard Karls University, Tuebingen, Germany
| | | | - Renaud Lhommel
- Division of Nuclear Medicine and Institut de Recherche Clinique, Cliniques Universitaires Saint Luc (UCLouvain), Brussels, Belgium
| | - Nicolas Aide
- INSERM ANTICIPE U1086, François Baclesse Cancer Centre, Caen, France
| | - Christophe Le Tourneau
- Department of Drug Development and Innovation, Institut Curie, Paris-Saclay University, Paris, France
| | - Elizabeth J de Koster
- Department of Radiology, Section of Nuclear Medicine, Leiden University Medical Center, Leiden, The Netherlands
- Department of Medical Imaging, Radboud University Medical Center, Nijmegen, The Netherlands
| | - Wim J G Oyen
- Department of Medical Imaging, Radboud University Medical Center, Nijmegen, The Netherlands
- Department of Radiology and Nuclear Medicine, Rijnstate Hospital, Arnhem, The Netherlands
- Department of Biomedical Sciences and Humanitas Clinical and Research Centre, Department of Nuclear Medicine, Humanitas University, Milan, Italy
| | - Lianne Triemstra
- Department of Radiology, Section of Nuclear Medicine, Leiden University Medical Center, Leiden, The Netherlands
- Department of Surgery, University Medical Center Utrecht, Utrecht, The Netherlands
| | - Jelle P Ruurda
- Department of Surgery, University Medical Center Utrecht, Utrecht, The Netherlands
| | - Erik Vegt
- Department of Radiology and Nuclear Medicine, Erasmus MC University Medical Center Rotterdam, Rotterdam, The Netherlands
| | - Lioe-Fee de Geus-Oei
- Department of Radiology, Section of Nuclear Medicine, Leiden University Medical Center, Leiden, The Netherlands
- Biomedical Photonic Imaging Group, University of Twente, Enschede, The Netherlands
| | - Floris H P van Velden
- Department of Radiology, Section of Nuclear Medicine, Leiden University Medical Center, Leiden, The Netherlands
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Brogna B, Maccioni F, Sgambato D, Capuano F, Iovine L, Guarino S, Di Libero L, Amendola A, Faggioni L, Cioni D. The Many Faces of Intestinal Tumors in Adults, Including the Primary Role of CT Imaging in Emergencies and the Important Role of Cross-Sectional Imaging: A Pictorial Review. Healthcare (Basel) 2025; 13:1071. [PMID: 40361849 PMCID: PMC12071709 DOI: 10.3390/healthcare13091071] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2025] [Revised: 04/19/2025] [Accepted: 04/29/2025] [Indexed: 05/15/2025] Open
Abstract
Background/Objectives: Small bowel tumors (SBTs) encompass a diverse range of tumor types, with benign tumors being the most prevalent. However, the incidence of malignant SBTs is increasing, particularly small bowel adenocarcinoma; this poses a diagnostic challenge for clinicians and radiologists due to the varied and nonspecific clinical and radiological presentations associated with SBTs. In fact, SBTs can present differently in emergencies, often mimicking inflammatory diseases or manifesting as complications such as intussusception, small bowel obstruction (SBO), intestinal ischemia, perforation, gastrointestinal bleeding, or metastatic disease. These tumors can remain asymptomatic for extended periods. Methods: We present a pictorial review on the role of imaging in evaluating SBTs, focusing on the emergency setting where diagnosis can be incidental. We also include some representative cases that may be useful for radiologists and residents in clinical practice. Results: Despite these challenges, contrast-enhanced computed tomography (CECT) is usually the best modality to use in emergencies for evaluating SBTs, and in some cases, a diagnosis can be made incidentally. However, when possible, multimodal imaging through cross-sectional imaging remains crucial for the non-invasive diagnosis of SBTs in stable patients, as endoscopic procedures may also be impractical. A complementary CT study with distension using negative oral contrast media, such as water, polyethylene glycol, or mannitol solutions, can improve the characterization of SBTs and rule out multiple SBT locations, particularly in small bowel neuroendocrine tumor (NET) and gastrointestinal tumor (GIST) localization. Positive water-soluble iodine-based oral contrast, such as Gastrografin (GGF), can be used to evaluate and monitor the intestinal lumen during the nonsurgical management of small bowel obstruction (SBO) or in suspected cases of small bowel perforations or the presence of fistulas. Magnetic resonance enterography (MRE) can aid in improving the characterization of SBTs through a multiplanar and multisequence study. Positron emission tomography combined with CT is generally an essential modality in evaluating metastatic disease and staging and assessing tumor prognosis, but it has limitations for indolent lymphoma and small NETs. Conclusions: Therefore, the integration of multiple imaging modalities can improve patient management and provide a preoperative risk assessment with prognostic and predictive indicators. In the future, radiomics could potentially serve as a "virtual biopsy" for SBTs, allowing for better diagnosis and more personalized management in precision medicine.
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Affiliation(s)
- Barbara Brogna
- Unit Interventional and Emergency Radiology, St. Giuseppe Moscati Hospital, Center of National Excellence and High Speciality, 83100 Avellino, Italy
| | - Francesca Maccioni
- Department of Radiological, Oncological and Pathological Sciences, Umberto I Hospital, Sapienza University of Rome, Viale Regina Elena 324, 00161 Rome, Italy;
| | - Dolores Sgambato
- Division of Gastroenterology, St. Giuseppe Moscati Hospital, Center of National Excellence and High Specialty, 83100 Avellino, Italy
| | - Fabiana Capuano
- Division of Gastroenterology, St. Giuseppe Moscati Hospital, Center of National Excellence and High Specialty, 83100 Avellino, Italy
| | - Lorenzo Iovine
- Department of Surgery, Responsible Research Hospital, Largo A. Gemelli, 86100 Campobasso, Italy
| | - Salvatore Guarino
- Department of Radiology, Monaldi Hospital, AORN dei Colli, Str. Vicinale Reggente 66/82, 80131 Naples, Italy
| | - Lorenzo Di Libero
- Department of General and Specialist Surgery, St. Giuseppe Moscati Hospital, Center of National Excellence and High Specialty, 83100 Avellino, Italy
| | - Alfonso Amendola
- Oncological and General Surgery Unit, St. Giuseppe Moscati Hospital, Center of National Excellence and High Specialty, 83100 Avellino, Italy
| | - Lorenzo Faggioni
- Academic Radiology, Department of Translational Research, University of Pisa, Via Roma, 67, 56126 Pisa, Italy
| | - Dania Cioni
- Academic Radiology, Department of Surgical, Medical, Molecular Pathology and Emergency Medicine, University of Pisa, Via Roma, 67, 56126 Pisa, Italy
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Dedhia M, Germano IM. The Evolving Landscape of Radiomics in Gliomas: Insights into Diagnosis, Prognosis, and Research Trends. Cancers (Basel) 2025; 17:1582. [PMID: 40361507 PMCID: PMC12071695 DOI: 10.3390/cancers17091582] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2025] [Revised: 04/28/2025] [Accepted: 05/03/2025] [Indexed: 05/15/2025] Open
Abstract
Gliomas are the most prevalent and aggressive form of primary brain tumors. The clinical challenge in managing patients with this disease revolves around the difficulty of diagnosis, both at onset and during treatment, and the scarcity of prognostic outcome indicators. Radiomics involves the extraction of quantitative features from medical images with the help of artificial intelligence, positioning it as a promising tool to be integrated into the care of glioma patients. Using data from 52 studies and 12,482 patients over two years, this review explores how radiomics can enhance the initial diagnosis of gliomas, especially helping to differentiate treatment stages that may be difficult for the human eye to do otherwise. Radiomics has also been able to identify patient-specific tumor molecular signatures for targeted treatments without the need for invasive surgical biopsy. Such an approach could lead to earlier interventions and more precise individualized therapies that are tailored to each patient. Additionally, it could be integrated into clinical practice to improve longitudinal diagnosis during treatment and predict tumor recurrence. Finally, radiomics has the potential to predict clinical outcomes, helping both patients and providers set realistic expectations. While this field is continuously evolving, future research should conduct such studies in larger, multi-institutional cohorts to enhance generalizability and applicability in clinical practice and focus on combining radiomics with other modalities to improve its predictive accuracy and clinical utility.
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Affiliation(s)
| | - Isabelle M. Germano
- Department of Neurosurgery, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA;
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Wang X, Hu X, Wang C, Yang H, Hu Y, Lan X, Huang Y, Cao Y, Yan L, Zhang F, Yu Y, Zhang J. Automatic Segmentation and Molecular Subtype Classification of Breast Cancer Using an MRI-based Deep Learning Framework. Radiol Imaging Cancer 2025; 7:e240184. [PMID: 40249269 DOI: 10.1148/rycan.240184] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/19/2025]
Abstract
Purpose To build a deep learning framework using contrast-enhanced MRI for lesion segmentation and automatic molecular subtype classification in breast cancer. Materials and Methods This retrospective multicenter study included patients with biopsy-proven invasive breast cancer between January 2015 and January 2021. An automatic breast lesion segmentation model was developed using three-dimensional (3D) ResU-Net as the backbone, and its accuracy was evaluated in an internal and two external testing datasets using the Dice score. An ensemble model for classification of breast cancer into four molecular subtypes (Ensemble ResNet) was then developed by combining both two-dimensional and 3D lesion features. The performance of Ensemble ResNet was evaluated in the three testing datasets using the area under the receiver operating characteristic curve (AUC). Results A total of 687 female patients (mean age ± SD, 48.70 years ± 8.97) were included, with 289, 61, 73, and 264 patients included in the training, internal testing, and two external testing datasets, respectively. The proposed segmentation model achieved high accuracy in internal testing dataset 1, external testing dataset 2, and external testing dataset 3 (Dice scores: 0.86, 0.82, 0.85) and luminal A, luminal B, human epidermal growth factor receptor 2 (HER2)-enriched, and triple-negative breast cancer (TNBC) subtypes (Dice scores: 0.8571, 0.8323, 0.8199, 0.8481). Ensemble ResNet demonstrated high performance for the prediction of luminal A subtypes (AUC range, 0.74-0.84), luminal B subtypes (AUC range, 0.68-0.72), HER2-enriched subtypes (AUC range, 0.73-0.82), and TNBC (AUC range, 0.80-0.81) in the three testing datasets. Conclusion The proposed novel deep learning framework based on MRI achieved high, robust performance in fully automatic classification of breast cancer molecular subtypes. Keywords: MR-Imaging, Breast, Oncology, Breast Cancer, Molecular Subtype, Deep Learning Framework Supplemental material is available for this article. © RSNA, 2025.
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Affiliation(s)
- Xiaoxia Wang
- Department of Radiology, Chongqing University Cancer Hospital, Chongqing Key Laboratory for Intelligent Oncology in Breast Cancer (iCQBC), No. 181 Hanyu Road, Shapingba District, Chongqing, China 400030
| | - Xiaofei Hu
- Department of Nuclear Medicine, Southwest Hospital, Third Military Medical University (Army Medical University), Chongqing, China
| | - Churan Wang
- AI Lab, Deepwise Healthcare, Beijing, China
- School of Computer Science, Software and Microelectronics, Peking University, Beijing, China
| | - Hua Yang
- Department of Radiology, Chongqing Hospital of Traditional Chinese Medicine, Chongqing, China
| | - Yan Hu
- Department of Radiology, Chongqing Hospital of Traditional Chinese Medicine, Chongqing, China
| | - Xiaosong Lan
- Department of Radiology, Chongqing University Cancer Hospital, Chongqing Key Laboratory for Intelligent Oncology in Breast Cancer (iCQBC), No. 181 Hanyu Road, Shapingba District, Chongqing, China 400030
| | - Yao Huang
- Department of Radiology, Chongqing University Cancer Hospital, Chongqing Key Laboratory for Intelligent Oncology in Breast Cancer (iCQBC), No. 181 Hanyu Road, Shapingba District, Chongqing, China 400030
| | - Ying Cao
- Department of Radiology, Chongqing University Cancer Hospital, Chongqing Key Laboratory for Intelligent Oncology in Breast Cancer (iCQBC), No. 181 Hanyu Road, Shapingba District, Chongqing, China 400030
| | - Lijun Yan
- School of Computer Science, Software and Microelectronics, Peking University, Beijing, China
| | | | - Yizhou Yu
- AI Lab, Deepwise Healthcare, Beijing, China
- Department of Computer Science, The University of Hong Kong, Hong Kong, China
| | - Jiuquan Zhang
- Department of Radiology, Chongqing University Cancer Hospital, Chongqing Key Laboratory for Intelligent Oncology in Breast Cancer (iCQBC), No. 181 Hanyu Road, Shapingba District, Chongqing, China 400030
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10
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Li Q, Li W, Wang J, Li X, Ji Y, Wu M. Non-invasive prediction of DCE-MRI radiomics model on CCR5 in breast cancer based on a machine learning algorithm. Cancer Biomark 2025; 42:18758592251332852. [PMID: 40395152 DOI: 10.1177/18758592251332852] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/22/2025]
Abstract
BackgroundNon-invasive methods with universal prognostic guidance for detecting breast cancer (BC) survival biomarkers need to be further explored.ObjectiveThis study aimed to investigate C-C motif chemokine receptor type 5 (CCR5) prognosis value in BC and develop a radiomics model for noninvasive prediction of CCR5 expression in BC.MethodsA total of 840 cases with genomic information were included and divided into CCR5 high- and low-expression groups for clinical characteristic differences exploration. Bioinformatics and survival analysis including Kaplan-Meier (KM) survival analysis, Cox regression, immunoinfiltration analysis, and tumor mutation load (TMB) were performed. For radiomics model development, 98 cases with dynamic contrast-enhancement magnetic resonance imaging (DCE-MRI) scans were used. Radiomics features extracted were using Pyradiomics and filtered by maximum-relevance minimum-redundancy (mRMR) and recursive feature elimination (REF) algorithms. Support vector machine (SVM) and logistic regression (LR) models were developed to predict CCR5 expression, with the radiomics score (Rad_score) representing the predicted probability of CCR5 expression. The models' performance was compared using the Delong test, and the model with the superior area under the curve (AUC) values was selected to analyze the correlation between CCR5 expression, Rad_score, and immune genes.ResultsThe CCR5 high-expression group exhibited better overall survival (OS) (p < 0.01). Six radiomics features were selected for model development. The AUCs of the SVM model predicting CCR5 were 0.753 and 0.748 in the training and validation sets, respectively, while the AUCs of the LR model were 0.763 and 0.762. Calibration curves and decision curve analysis (DCA) validated the models' calibration and clinical utility. The SVM_Rad_score showed a strong association with immune-related genes.ConclusionsThe DCE-MRI radiomics model presents a novel, non-invasive tool for predicting CCR5 expression in BC and provides valuable insights to inform clinical decision-making.
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Affiliation(s)
- Qingfeng Li
- First Clinical Medical College, Jiangsu Collaborative Innovation Center of Traditional Chinese Medicine Prevention and Treatment of Cancer, Nanjing University of Chinese Medicine, Nanjing, China
- Department of Rehabilitation Medicine, School of Acupuncture-Moxibustion and Tuina and School of Health Preservation and Rehabilitation, Nanjing University of Chinese Medicine, Nanjing, China
| | - Wenting Li
- First Clinical Medical College, Jiangsu Collaborative Innovation Center of Traditional Chinese Medicine Prevention and Treatment of Cancer, Nanjing University of Chinese Medicine, Nanjing, China
| | - Jianliang Wang
- Department of Radiology, Affiliated Kunshan Hospital of Jiangsu University, Kunshan, China
| | - Xiangyuan Li
- Department of Urology, Kunshan Hospital of Traditional Chinese Medicine, Kunshan, China
| | - Yi Ji
- Department of Oncology, Affiliated Hospital of Integrated Traditional Chinese and Western Medicine, Nanjing University of Chinese Medicine, Nanjing, China
| | - Mianhua Wu
- First Clinical Medical College, Jiangsu Collaborative Innovation Center of Traditional Chinese Medicine Prevention and Treatment of Cancer, Nanjing University of Chinese Medicine, Nanjing, China
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Mesurolle B, El Khoury M. Breast Cancer Risk Prediction with Radiomic Tissue Characterization on Mammograms Takes Shape. Radiology 2025; 315:e250622. [PMID: 40358449 DOI: 10.1148/radiol.250622] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/15/2025]
Affiliation(s)
- Benoît Mesurolle
- Department of Radiology, Elsan, Centre République, 99 avenue de la République, BP 304, 63023 Clermont-Ferrand Cedex 2, France
| | - Mona El Khoury
- Department of Radiology, Centre Hospitalier Universitaire de Montréal (CHUM), Montréal, Canada
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Xu T, Zhang X, Tang H, Hua Bd T, Xiao F, Cui Z, Tang G, Zhang L. The Value of Whole-Volume Radiomics Machine Learning Model Based on Multiparametric MRI in Predicting Triple-Negative Breast Cancer. J Comput Assist Tomogr 2025; 49:407-416. [PMID: 39631431 DOI: 10.1097/rct.0000000000001691] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/07/2024]
Abstract
OBJECTIVE This study aimed to investigate the value of radiomics analysis in the precise diagnosis of triple-negative breast cancer (TNBC) based on breast dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) and apparent diffusion coefficient (ADC) maps. METHODS This retrospective study included 326 patients with pathologically proven breast cancer (TNBC: 129, non-TNBC: 197). The lesions were segmented using the ITK-SNAP software, and whole-volume radiomics features were extracted using a radiomics platform. Radiomics features were obtained from DCE-MRI and ADC maps. The least absolute shrinkage and selection operator regression method was employed for feature selection. Three prediction models were constructed using a support vector machine classifier: Model A (based on the selected features of the ADC maps), Model B (based on the selected features of DCE-MRI), and Model C (based on the selected features of both combined). Receiver operating characteristic curves were used to evaluate the diagnostic performance of the conventional MR image model and the 3 radiomics models in predicting TNBC. RESULTS In the training dataset, the AUCs for the conventional MR image model and the 3 radiomics models were 0.749, 0.801, 0.847, and 0.896. The AUCs for the conventional MR image model and 3 radiomics models in the validation dataset were 0.693, 0.742, 0.793, and 0.876, respectively. CONCLUSIONS Radiomics based on the combination of whole volume DCE-MRI and ADC maps is a promising tool for distinguishing between TNBC and non-TNBC.
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Affiliation(s)
- Tingting Xu
- Department of Radiology, Shanghai Tenth People's Hospital, Tongji University School of Medicine, Shanghai, China
| | - Xueli Zhang
- Department of Radiology, Shanghai Tenth People's Hospital, Tongji University School of Medicine, Shanghai, China
| | - Huan Tang
- Department of Radiology, Huadong Hospital of Fudan University, Shanghai, China
| | - Ting Hua Bd
- Department of Radiology, Shanghai Tenth People's Hospital, Tongji University School of Medicine, Shanghai, China
| | - Fuxia Xiao
- Department of Radiology, Shanghai Tenth People's Hospital, Tongji University School of Medicine, Shanghai, China
| | - Zhijun Cui
- Department of Radiology, Chongming Branch of Shanghai Tenth People's Hospital, Tongji University School of Medicine, Shanghai, China
| | | | - Lin Zhang
- Department of Radiology, Shanghai Tenth People's Hospital, Tongji University School of Medicine, Shanghai, China
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Chen Y, Guo W, Li Y, Lin H, Dong D, Qi Y, Pu R, Liu A, Li W, Sun B. Differentiation of Glioblastoma and Solitary Brain Metastasis Using Brain-Tumor Interface Radiomics Features Based on MR Images: A Multicenter Study. Acad Radiol 2025:S1076-6332(25)00308-3. [PMID: 40280830 DOI: 10.1016/j.acra.2025.04.008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2025] [Revised: 03/27/2025] [Accepted: 04/03/2025] [Indexed: 04/29/2025]
Abstract
RATIONALE AND OBJECTIVES Glioblastoma (GBM) and solitary brain metastasis (SBM) exhibit similar radiomics features on magnetic resonance imaging (MRI), yet their treatment strategies and prognoses significantly differ. Therefore, accurate differentiation between these two types of tumors is crucial for clinical decision-making. This study aims to establish and validate an efficient diagnostic model based on the radiomic features of the T1-weighted contrast-enhanced (T1CE) sequence in the 10 mm brain-tumor interface region to achieve precise differentiation between GBM and SBM. METHODS This study retrospectively collected contrast-enhanced T1-weighted imaging data from 226 GBM patients and 206 SBM patients at three centers between January 2010 and October 2024. Samples from centers 1 and 2 were used as the training set, while samples from center 3 were used as the test set. Two observers manually delineated the tumor edges on the T1CE images layer by layer to obtain the Region of Interest (ROI) covering the entire tumor volume. A 10 mm brain-to-tumor interface (BTI) was extracted using Python code. Radiomic features were extracted from the 10 mm BTI region, followed by feature selection and model construction. Finally, SHAP (SHapley Additive exPlanations) was used to visualize the model. Three radiologists with 2, 6, and 18 years of diagnostic experience independently evaluated the test set samples without knowing the patient information or pathology results, establishing three diagnostic models. The DeLong test was used to compare these models with the radiomic model. RESULTS Ultimately, ten radiomic features were used for modeling. The model established using the logistic regression (LR) algorithm had an AUC of 0.893 on the training set and 0.808 on the test set. The AUCs of the three radiologists with different diagnostic experiences on the test set were 0.699, 0.740, and 0.789, respectively, all lower than that of the radiomic model. The DeLong test showed that ModelBTI performed significantly better than Doctor 1 (p<0.05) in the test set, but there was no statistically significant difference in performance between ModelBTI and Doctors 2 and 3. CONCLUSION The radiomic model constructed based on the 10 mm brain-tumor interface can effectively differentiate between GBM and SBM, capturing tumor heterogeneity from a new perspective, thereby significantly improving diagnostic performance and providing assistance for clinical diagnosis. DATA AVAILABILITY STATEMENT The original contributions presented in the study are included in the article/Supplemental material, further inquiries can be directed to the corresponding authors.
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Affiliation(s)
- Yini Chen
- Department of Radiology, The First Affiliated Hospital of DalianMedical University, Dalian, China (Y.C., H.L., D.D., Y.Q., R.P., A.L., B.S.)
| | - Weiya Guo
- Department of Radiology, Dalian Municipal Women and Children's Medical Center (Group), Dalian, China (W.G.)
| | - Yushi Li
- Department of Radiology, The Second Affiliated Hospital of DalianMedical University, Dalian, China (Y.L.)
| | - Hongsen Lin
- Department of Radiology, The First Affiliated Hospital of DalianMedical University, Dalian, China (Y.C., H.L., D.D., Y.Q., R.P., A.L., B.S.)
| | - Deshuo Dong
- Department of Radiology, The First Affiliated Hospital of DalianMedical University, Dalian, China (Y.C., H.L., D.D., Y.Q., R.P., A.L., B.S.)
| | - Yiwei Qi
- Department of Radiology, The First Affiliated Hospital of DalianMedical University, Dalian, China (Y.C., H.L., D.D., Y.Q., R.P., A.L., B.S.)
| | - Renwang Pu
- Department of Radiology, The First Affiliated Hospital of DalianMedical University, Dalian, China (Y.C., H.L., D.D., Y.Q., R.P., A.L., B.S.)
| | - Ailian Liu
- Department of Radiology, The First Affiliated Hospital of DalianMedical University, Dalian, China (Y.C., H.L., D.D., Y.Q., R.P., A.L., B.S.)
| | - Wei Li
- Department of Radiology, Shengjing Hospital of China Medical University, Shenyang, China (W.L.)
| | - Bo Sun
- Department of Radiology, The First Affiliated Hospital of DalianMedical University, Dalian, China (Y.C., H.L., D.D., Y.Q., R.P., A.L., B.S.).
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Zeng D, Song Z, Liu Q, Huang J, Wang X, Tang Z. Radiomics analysis of dual-layer detector spectral CT-derived iodine maps for predicting Ki-67 PI in pancreatic ductal adenocarcinoma. BMC Med Imaging 2025; 25:124. [PMID: 40247246 PMCID: PMC12007212 DOI: 10.1186/s12880-025-01664-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2024] [Accepted: 04/07/2025] [Indexed: 04/19/2025] Open
Abstract
OBJECTIVE To evaluate the feasibility of radiomics analysis using dual-layer detector spectral CT (DLCT)-derived iodine maps for the preoperative prediction of the Ki-67 proliferation index (PI) in pancreatic ductal adenocarcinoma (PDAC). MATERIALS AND METHODS A total of 168 PDAC patients who underwent DLCT examination were included and randomly allocated to the training (n = 118) and validation (n = 50) sets. A clinical model was constructed using independent clinicoradiological features identified through multivariate logistic regression analysis in the training set. The radiomics signature was generated based on the coefficients of selected features from iodine maps in the arterial and portal venous phases of DLCT. Finally, a radiomics-clinical model was developed by integrating the radiomics signature and significant clinicoradiological features. The predictive performance of three models was evaluated using the Receiver Operating Characteristic (ROC) curve and Decision Curve Analysis. The optimal model was then used to develop a nomogram, with goodness-of-fit evaluated through the calibration curve. RESULTS The radiomics-clinical model integrating radiomics signature, CA19-9, and CT-reported regional lymph node status demonstrated excellent performance in predicting Ki-67 PI in PDAC, which showed an area under the ROC curve of 0.979 and 0.956 in the training and validation sets, respectively. The radiomics-clinical nomogram demonstrated the improved net benefit and exhibited satisfactory consistency. CONCLUSIONS This exploratory study demonstrated the feasibility of using DLCT-derived iodine map-based radiomics to predict Ki-67 PI preoperatively in PDAC patients. While preliminary, our findings highlight the potential of functional imaging combined with radiomics for personalized treatment planning.
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Affiliation(s)
- Dan Zeng
- Department of Radiology, Chongqing General Hospital, Chongqing, China
| | - Zuhua Song
- Department of Radiology, Chongqing General Hospital, Chongqing, China
| | - Qian Liu
- Department of Radiology, Chongqing General Hospital, Chongqing, China
| | - Jie Huang
- Department of Radiology, Chongqing General Hospital, Chongqing, China
| | - Xinwei Wang
- Department of Radiology, Chongqing General Hospital, Chongqing, China
| | - Zhuoyue Tang
- Department of Radiology, Chongqing General Hospital, Chongqing, China.
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Lian T, Deng C, Feng Q. Patch-Based Texture Feature Extraction Towards Improved Clinical Task Performance. Bioengineering (Basel) 2025; 12:404. [PMID: 40281764 PMCID: PMC12024865 DOI: 10.3390/bioengineering12040404] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2025] [Revised: 04/01/2025] [Accepted: 04/08/2025] [Indexed: 04/29/2025] Open
Abstract
Texture features can capture microstructural patterns and tissue heterogeneity, playing a pivotal role in medical image analysis. Compared to deep learning-based features, texture features offer superior interpretability in clinical applications. However, as conventional texture features focus strictly on voxel-level statistical information, they fail to account for critical spatial heterogeneity between small tissue volumes, which may hold significant importance. To overcome this limitation, we propose novel 3D patch-based texture features and develop a radiomics analysis framework to validate the efficacy of our proposed features. Specifically, multi-scale 3D patches were created to construct patch patterns via k-means clustering. The multi-resolution images were discretized based on labels of the patterns, and then texture features were extracted to quantify the spatial heterogeneity between patches. Twenty-five cross-combination models of five feature selection methods and five classifiers were constructed. Our methodology was evaluated using two independent MRI datasets. Specifically, 145 breast cancer patients were included for axillary lymph node metastasis prediction, and 63 cervical cancer patients were enrolled for histological subtype prediction. Experimental results demonstrated that the proposed 3D patch-based texture features achieved an AUC of 0.76 in the breast cancer lymph node metastasis prediction task and an AUC of 0.94 in cervical cancer histological subtype prediction, outperforming conventional texture features (0.74 and 0.83, respectively). Our proposed features have successfully captured multi-scale patch-level texture representations, which could enhance the application of imaging biomarkers in the precise prediction of cancers and personalized therapeutic interventions.
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Affiliation(s)
- Tao Lian
- School of Biomedical Engineering, Southern Medical University, Guangzhou 510515, China;
- Guangdong Provincial Key Laboratory of Medical Image Processing, Southern Medical University, Guangzhou 510515, China
- Guangdong Province Engineering Laboratory for Medical Imaging and Diagnostic Technology, Southern Medical University, Guangzhou 510515, China
| | - Chunyan Deng
- School of Biomedical Engineering, Southern Medical University, Guangzhou 510515, China;
| | - Qianjin Feng
- School of Biomedical Engineering, Southern Medical University, Guangzhou 510515, China;
- Guangdong Provincial Key Laboratory of Medical Image Processing, Southern Medical University, Guangzhou 510515, China
- Guangdong Province Engineering Laboratory for Medical Imaging and Diagnostic Technology, Southern Medical University, Guangzhou 510515, China
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Yin L, Wang J, Fu P, Xing L, Liu Y, Li Z, Gan J. Enhancing survival predictions in lung cancer with cystic airspaces: a multimodal approach combining clinical and radiomic features. Front Oncol 2025; 15:1524212. [PMID: 40276061 PMCID: PMC12018221 DOI: 10.3389/fonc.2025.1524212] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2024] [Accepted: 03/24/2025] [Indexed: 04/26/2025] Open
Abstract
Objective To enhance the prognostic assessment and management of lung cancer with cystic airspaces (LCCA) by integrating temporal clinical and phenotypic dimensions of tumor growth. Patients and methods A retrospective analysis was conducted on LCCA patients treated at two hospitals. Clinical and imaging characteristics were analyzed using the independent samples t-test, Mann-Whitney U test, and χ2 test. Features with significant differences were further analyzed using multivariate Cox regression to identify independent prognostic factors. Radiomic features were extracted from CT images, and volume doubling time (VDT) was calculated from two follow-up scans. Separate predictive models were constructed based on radiomic features and VDT. A fusion model integrating radiomic features, VDT, and independent clinical prognostic factors was developed. Model performance was evaluated using receiver operating characteristic curve and the area under the curve, with DeLong's test used for comparison. Results A total of 193 patients were included, with an average survival time of 48.5 months. Significant differences were found between survivors and non-survivors in age, smoking status, chronic obstructive pulmonary disease, and tumor volume (P < 0.05). Multivariate Cox analysis identified smoking and chronic obstructive pulmonary disease as independent risk factors (P = 0.028 and P = 0.013). The VDT for survivors was 421 (298 582.5) days compared to 334.5 ± 106.1 days for non-survivors (Z = -3.330, P = 0.001). In the validation set, the area under the curve for the VDT model was 0.805, for the radiomic model 0.717, and for the fusion model 0.895, demonstrating the highest predictive performance (P < 0.05). Conclusion Integrating VDT, radiomics, and clinical imaging features into a fusion model improves the accuracy of predicting the five-year survival rate for LCCA patients, enhancing personalized and precise cancer treatment.
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Affiliation(s)
- Liang Yin
- Medical Imaging, Shandong Provincial Third Hospital, Jinan, Shandong, China
| | - Jing Wang
- Medical Imaging, Shandong Provincial Third Hospital, Jinan, Shandong, China
| | - Pingyou Fu
- Radiology Department, Shandong Yellow River Hospital, Jinan, China
| | - Lu Xing
- Radiology Department, Shandong Yellow River Hospital, Jinan, China
| | - Yuan Liu
- Radiology Department, Shandong Yellow River Hospital, Jinan, China
| | - Zongchang Li
- Medical Imaging, Shandong Provincial Third Hospital, Jinan, Shandong, China
| | - Jie Gan
- Medical Imaging, Shandong Provincial Third Hospital, Jinan, Shandong, China
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Kinoshita S, Nakaura T, Yoshizumi T, Itoh S, Ide T, Noshiro H, Hamada T, Kuroki T, Takami Y, Nagano H, Nanashima A, Endo Y, Utsunomiya T, Kajiwara M, Miyoshi A, Sakoda M, Okamoto K, Beppu T, Takatsuki M, Noritomi T, Baba H, Eguchi S. Real-world efficacy of radiomics versus clinical predictors for microvascular invasion in patients with hepatocellular carcinoma: Large cohort study. Hepatol Res 2025; 55:567-576. [PMID: 40317657 DOI: 10.1111/hepr.14149] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/04/2024] [Revised: 10/29/2024] [Accepted: 11/24/2024] [Indexed: 05/07/2025]
Abstract
AIM Microvascular invasion (MVI) affects the prognosis and treatment of hepatocellular carcinoma (HCC); however, its preoperative diagnosis is challenging. Analysis of computed tomography (CT) images using radiomics can detect MVI, but its effectiveness depends on the imaging conditions. We compared the efficacies of radiomics, clinical, and combined models for predicting MVI in HCC using nonstandardized scanning protocols. METHODS This multicenter study included 533 patients who underwent hepatic resection for HCC. Patients were divided randomly into training (n = 426) and test groups (n = 107). We manually extracted 3D CT features in hepatic arterial, portal venous, and venous phases. The radiomics model was trained by machine learning. A logistic regression model was developed based on clinical information, and a fused model was created integrating clinical information and radiomics prediction score (Rad_Score). We calculated areas under the receiver operating characteristic curves (AUCs) for the radiomics, clinical, and mixed models in the test groups. RESULTS The clinical model incorporated hepatitis B virus surface antigen, tumor diameter, and log-transformed α-fetoprotein and des-gamma-carboxyprothrombin. The AUCs of the radiomics and clinical models were comparable (p = 0.76). Rad_Score was not an independent significant factor in the fused model (p = 0.40) and its addition did not improve the accuracy of the clinical model alone (p = 0.51). CONCLUSIONS A clinical model is as effective as a CT radiomics model for predicting MVI status in patients with HCC based on real-world scanning data, and integration of both models does not improve the predictive performance compared with a clinical model alone.
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Affiliation(s)
- Shotaro Kinoshita
- Department of Gastroenterological Surgery, Graduate School of Life Sciences, Kumamoto University, Kumamoto, Japan
| | - Takeshi Nakaura
- Department of Diagnostic Radiology, Graduate School of Life Sciences, Kumamoto University, Kumamoto, Japan
| | - Tomoharu Yoshizumi
- Department of Surgery and Science, Graduate School of Medical Sciences, Kyushu University, Fukuoka, Japan
| | - Shinji Itoh
- Department of Surgery and Science, Graduate School of Medical Sciences, Kyushu University, Fukuoka, Japan
| | - Takao Ide
- Department of Surgery, Saga University Faculty of Medicine, Saga, Japan
| | - Hirokazu Noshiro
- Department of Surgery, Saga University Faculty of Medicine, Saga, Japan
| | - Takashi Hamada
- Department of Surgery, NHO Nagasaki Medical Center, Nagasaki, Japan
| | - Tamotsu Kuroki
- Department of Surgery, NHO Nagasaki Medical Center, Nagasaki, Japan
| | - Yuko Takami
- Department of Hepato-Biliary-Pancreatic Surgery, Clinical Research Institute, NHO Kyushu Medical Center, Fukuoka, Japan
| | - Hiroaki Nagano
- Department of Gastroenterological, Breast and Endocrine Surgery, Yamaguchi University Graduate School of Medicine, Ube, Japan
| | - Atsushi Nanashima
- Division of Hepato-Biliary-Pancreas Surgery, Department of Surgery, University of Miyazaki Faculty of Medicine, Miyazaki, Japan
| | - Yuichi Endo
- Department of Gastroenterological and Pediatric Surgery, Oita University Faculty of Medicine, Oita, Japan
| | - Tohru Utsunomiya
- Department of Gastroenterological Surgery, Oita Prefectural Hospital, Oita, Japan
| | - Masatoshi Kajiwara
- Department of Gastroenterological Surgery, Faculty of Medicine, Fukuoka University, Fukuoka, Japan
| | - Atsushi Miyoshi
- Department of Surgery, Saga-Ken Medical Centre Koseikan, Saga, Japan
| | - Masahiko Sakoda
- Department of Surgery, Kagoshima Kouseiren Hospital, Kagoshima, Japan
| | - Kohji Okamoto
- Department of Surgery, Gastroenterology and Hepatology Center, Kitakyushu City Yahata Hospital, Kitakyushu, Japan
| | - Toru Beppu
- Department of Surgery, Yamaga City Medical Center, Yamaga, Japan
| | - Mitsuhisa Takatsuki
- Department of Digestive and General Surgery, Graduate School of Medicine, University of the Ryukyus, Nishihara, Japan
| | - Tomoaki Noritomi
- Department of Surgery, Fukuoka Tokushukai Hospital, Fukuoka, Japan
| | - Hideo Baba
- Department of Gastroenterological Surgery, Graduate School of Life Sciences, Kumamoto University, Kumamoto, Japan
| | - Susumu Eguchi
- Department of Surgery, Nagasaki University Graduate School of Biomedical Sciences, Nagasaki, Japan
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Tao Y, Sun R, Li J, Wu W, Xie Y, Ye X, Li X, Nie S. A CNN-transformer fusion network for predicting high-grade patterns in stage IA invasive lung adenocarcinoma. Med Phys 2025. [PMID: 40165728 DOI: 10.1002/mp.17781] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2024] [Revised: 02/14/2025] [Accepted: 03/14/2025] [Indexed: 04/02/2025] Open
Abstract
BACKGROUND Invasive lung adenocarcinoma (LUAD) with the high-grade patterns (HGPs) has the potential for rapid metastasis and frequent recurrence. Therefore, accurately predicting the presence of high-grade components is crucial for doctors to develop personalized treatment plans and improve patient prognosis. PURPOSE To develop a CNN-transformer fusion network based on radiomics and clinical information for predicting the HGPs of LUAD. METHODS A total of 288 lesions in 288 patients with pathologically confirmed invasive LUAD were enrolled. Firstly, radiomics features were extracted from the entire tumor region on lung computed tomography (CT) images and then fused with clinical patient characteristics. Secondly, a structure was proposed that concatenated a convolutional neural network (CNN) and Transformer encoding blocks to mine and extract more comprehensive information. Finally, a classification prediction was performed through fully connected layers. RESULTS Accuracy, sensitivity, specificity, precision, and area under the receiver operating characteristic (ROC) curve (AUC) were utilized for evaluation of the model's classification prediction performance. Delong's test was used to compare the AUCs of different models for significance. The proposed model was effective with an accuracy of 0.86, sensitivity of 0.67, specificity of 0.94, precision of 0.74, and AUC of 0.91. CONCLUSIONS The CNN-transformer fusion network, based on radiomics and clinical information, demonstrates good performance in predicting the presence of HGPs and can be employed to assist in the development of personalized treatment plans for patients with invasive LUAD.
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Affiliation(s)
- Yali Tao
- School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai, China
| | - Rong Sun
- School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai, China
| | - Jian Li
- Product Research Center, Jiufeng Healthcare Co., Ltd., Jiangxi, China
| | - Wenhui Wu
- Product Research Center, Jiufeng Healthcare Co., Ltd., Jiangxi, China
| | - Yuanzhong Xie
- Medical Imaging Center, Tai'an Central Hospital, Shandong, China
| | - Xiaodan Ye
- Department of Radiology, Zhongshan Hospital, Fudan University, Shanghai, China
| | - Xiujuan Li
- Medical Imaging Center, Tai'an Central Hospital, Shandong, China
| | - Shengdong Nie
- School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai, China
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19
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Cheng Y, Feng Z, Wang X. Construction and Value Analysis of a Prognostic Assessment Model Based on Radiomics and Genetic Data for Colorectal Cancer. Br J Hosp Med (Lond) 2025; 86:1-18. [PMID: 40135319 DOI: 10.12968/hmed.2024.0620] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/27/2025]
Abstract
Aims/Background Colorectal cancer (CRC) is one of the major global health problems, with high morbidity and mortality, underscoring the need for new diagnostic and prognostic tools. Therefore, this study aims to evaluate the significance of integrating radiomics with genetic data in CRC prognostic assessment and improve the accuracy of prognosis prediction. Methods This study included computed tomography (CT) images from 225 CRC patients and RNA-seq information from 654 patients, obtained from the TICA database. Key radiomics features and genes were identified through radiomics feature extraction, least absolute shrinkage and selection operator (LASSO) regression analysis, and Kaplan-Meier survival analysis. Furthermore, a CRC prognostic model was constructed using these key genes and radiomics features. Results This study identified 170 key radiomics features. Out of them, five were significantly associated with CRC prognosis. Transcriptome data analysis identified 8 key genes, among which the high expressions of Inhibin Subunit Beta B (INHBB), Potassium Voltage-Gated Channel Subfamily Q Member 2 (KCNQ2), and Ubiquilin Like (UBQLNL) were significantly correlated with poor prognosis. Age, tumor stage, pathological T stage, and pathological N stage were determined as independent prognostic factors. Moreover, immune infiltration analysis demonstrated that the immune score of the low-risk group was higher than that of the high-risk group, with significant differences in some immune cells, and key genes were correlated with immune cells. Additionally, the constructed CRC prognostic model incorporating three genes, INHBB, KCNQ2, and UBQLNL, exhibited high prediction accuracy in the validation set, with area under the curve (AUC) values of 0.80, 0.87, and 0.84 at 1-year, 3-year, and 5-year, respectively, indicating good prediction performance and reliability of the model. Conclusion The multimodal data combining radiomics features and gene expression data can improve the accuracy of CRC prognostic assessment, providing a valuable prognostic prediction tool for clinical practice and helping to guide the selection and optimization of treatment regimens.
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Affiliation(s)
- Yongna Cheng
- Department of Radiology, Yiwu Central Hospital, Yiwu, Zhejiang, China
| | - Ziming Feng
- Department of Cardiovascular Medicine, Yiwu Central Hospital, Yiwu, Zhejiang, China
| | - Xiangming Wang
- Department of Radiology, Yiwu Central Hospital, Yiwu, Zhejiang, China
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20
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Neimantaite A, Carstam L, Gómez Vecchio T, Häggström I, Dunås T, Latini F, Zetterling M, Blomstrand M, Bartek J, Jensdottir M, Thurin E, Smits A, Jakola AS. Survival prediction with radiomics for patients with IDH mutated lower-grade glioma. J Neurooncol 2025:10.1007/s11060-025-05006-z. [PMID: 40100522 DOI: 10.1007/s11060-025-05006-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2025] [Accepted: 03/08/2025] [Indexed: 03/20/2025]
Abstract
PURPOSE Adult patients with diffuse lower-grade gliomas (dLGG) show heterogeneous survival outcomes, complicating postoperative treatment planning. Treating all patients early increases the risk of long-term side effects, while delayed treatment may lead to impaired survival. Refinement of prognostic models could optimize timing of treatment. Conventional radiological features are prognostic in dLGG, but MRI could carry more prognostic information. This study aimed to investigate MRI-based radiomics survival models and compare them with clinical models. METHODS Two clinical survival models were created: a preoperative model (tumor volume) and a full clinical model (tumor volume, extent of resection, tumor subtype). Radiomics features were extracted from preoperative MRI. The dataset was divided into training set and unseen test set (70:30). Model performance was evaluated on test set with Uno's concordance index (c-index). Risk groups were created by the best performing model's predictions. RESULTS 207 patients with mutated IDH (mIDH) dLGG were included. The preoperative clinical, full clinical and radiomics models showed c-indexes of 0.70, 0.71 and 0.75 respectively on test set for overall survival. The radiomics model included four features of tumor diameter and tumor heterogeneity. The combined full clinical and radiomics model showed best performance with c-index = 0.79. The survival difference between high- and low-risk patients according to the combined model was both statistically significant and clinically relevant. CONCLUSION Radiomics can capture quantitative prognostic information in patients with dLGG. Combined models show promise of synergetic effects and should be studied further in astrocytoma and oligodendroglioma patients separately for optimal modelling of individual risks.
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Affiliation(s)
- Alice Neimantaite
- Department of Clinical Neuroscience, Institute of Neuroscience and Physiology, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden.
| | - Louise Carstam
- Department of Neurosurgery, Sahlgrenska University Hospital, Gothenburg, Sweden
| | - Tomás Gómez Vecchio
- Department of Clinical Neuroscience, Institute of Neuroscience and Physiology, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden
- Institute of Health and Care Sciences, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden
| | - Ida Häggström
- Department of Electrical Engineering, Chalmers University of Technology, Gothenburg, Sweden
- Department of Medical Radiation Sciences, University of Gothenburg, Gothenburg, Sweden
| | - Tora Dunås
- Department of Clinical Neuroscience, Institute of Neuroscience and Physiology, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden
| | - Francesco Latini
- Department of Medical Sciences, Section of Neurosurgery, Uppsala University Hospital, Uppsala, Sweden
| | - Maria Zetterling
- Department of Medical Sciences, Section of Neurosurgery, Uppsala University Hospital, Uppsala, Sweden
| | - Malin Blomstrand
- Department of Oncology, Institute of Clinical Sciences, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden
- Department of Oncology, Sahlgrenska University Hospital, Gothenburg, Sweden
| | - Jiri Bartek
- Department of Clinical Neuroscience, Karolinska Institute, Stockholm, Sweden
- Department of Neurosurgery, Karolinska University Hospital, Stockholm, Sweden
- Department of Neurosurgery, Rigshospitalet, Copenhagen, Denmark
| | - Margret Jensdottir
- Department of Clinical Neuroscience, Karolinska Institute, Stockholm, Sweden
- Department of Neurosurgery, Karolinska University Hospital, Stockholm, Sweden
- Department of Neurosurgery, Rigshospitalet, Copenhagen, Denmark
| | - Erik Thurin
- Department of Clinical Neuroscience, Institute of Neuroscience and Physiology, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden
- Department of Radiology, Sahlgrenska University Hospital, Gothenburg, Sweden
| | - Anja Smits
- Department of Clinical Neuroscience, Institute of Neuroscience and Physiology, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden
| | - Asgeir S Jakola
- Department of Clinical Neuroscience, Institute of Neuroscience and Physiology, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden
- Department of Neurosurgery, Sahlgrenska University Hospital, Gothenburg, Sweden
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21
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Li M, Ding N, Yin S, Lu Y, Ji Y, Jin L. Tumour habitat-based radiomics analysis enhances the ability to predict prostate cancer aggressiveness with biparametric MRI-derived features. Front Oncol 2025; 15:1504132. [PMID: 40165905 PMCID: PMC11955456 DOI: 10.3389/fonc.2025.1504132] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2024] [Accepted: 02/28/2025] [Indexed: 04/02/2025] Open
Abstract
Objective The purpose of this study was to develop three predictive models utilising clinical factors, radiomics features, and habitat features, to distinguish between nonclinically significant prostate cancer (csPCa) and clinically significant PCa (non-csPCa) on the basis of biparametric MRI (bp-MRI). Methods A total of 175 patients were enrolled, including 134 individuals with csPCa and 41 with non-csPCa. The clinical model was developed using optimal predictive factors obtained from univariable logistic regression and modelled through a random forest approach. Image acquisition and segmentation were performed first in the creation of both the radiomics model and the habitat model. The K-means clustering algorithm was then used exclusively for habitat generation in the development of the habitat model. Finally, feature selection and model construction were performed for both models. Model comparison and diagnostic efficacy assessment were conducted through receiver operating characteristic curve analysis, decision curve analysis (DCA), and calibration curve analysis. Results The habitat model outperformed both the radiomics model and the clinical model in distinguishing csPCa from non-csPCa patients. The AUC values of the habitat model in the training and test sets were 0.99 and 0.93, respectively. Furthermore, DCA and the calibration curves highlighted the superior clinical utility and greater predictive accuracy of the habitat model in comparison with the other two models. Conclusion We developed a habitat-based radiomics model with a greater ability to distinguish between csPCa and non-csPCa on the basis of bp-MRI than a traditional radiomics model and clinical model. This introduces a novel approach for assessing the heterogeneity of PCa and offers urologists a quantitative, noninvasive method for preoperatively evaluating the aggressiveness of PCa.
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Affiliation(s)
| | | | | | | | - Yiding Ji
- Department of Radiology, Suzhou Ninth Hospital Affiliated to Soochow University, Suzhou, Jiangsu, China
| | - Long Jin
- Department of Radiology, Suzhou Ninth Hospital Affiliated to Soochow University, Suzhou, Jiangsu, China
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22
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Zhao L, Wang J, Song J, Zhang F, Liu J. Combining serum biomarkers and MRI radiomics to predict treatment outcome after thermal ablation in hepatocellular carcinoma. Am J Transl Res 2025; 17:2031-2043. [PMID: 40226017 PMCID: PMC11982863 DOI: 10.62347/tfrf1430] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2024] [Accepted: 02/09/2025] [Indexed: 04/15/2025]
Abstract
OBJECTIVE To investigate the predictive value of serum alpha - fetoprotein (AFP), lectin-reactive alpha-fetoprotein (AFP-L3), and multimodal magnetic resonance imaging (MRI) radiomics in forecasting therapeutic efficacy and prognosis following radiofrequency ablation (RFA) in patients with hepatocellular carcinoma (HCC). METHODS A retrospective analysis was conducted on HCC patients who underwent RFA between January 2019 and December 2023. Clinical and radiologic features of HCC were analyzed. A predictive model was developed using clinical data and radiomic features collected before surgery, with the goal of predicting prognosis after RFA. The predictive performance of the model was evaluated using AUC values in both training and validation cohorts. RESULTS A total of 298 HCC patients were included in the study, divided into a good prognosis group (n=145) and a poor prognosis group (n=153). Serum AFP and AFP-L3 levels were significantly higher in the poor prognosis group (P=0.007 and P=0.02, respectively). Independent predictive factors included: AFP-L3 (95% CI -1.228, -1.1.61; P<0.001), AFP (95% CI 0.017, 0.036; P<0.001), intratumoral hemorrhage (95% CI 0.380, 0.581; P<0.001), peritumoral arterial tumor enhancement (95% CI 0.193, 0.534; P<0.001) and low signal intensity around liver and gallbladder tumors (95% CI 0.267, 0.489; P<0.001). The combined clinical-radiological-radiomics model demonstrated superior predictive performance, with AUC value of 0.897 in the training set and 0.841 in the validation set, outperforming individual models and sequences. CONCLUSION The integrated clinical-radiological-radiomics model showed excellent predictive performance for the prognosis of HCC patients undergoing RFA, surpassing individual models. Key predictors included serum AFP, AFP-L3 levels, intratumoral hemorrhage, and peritumoral low signal intensity. This multimodal approach offers a promising tool for individualized prognostic assessment and improved clinical decision-making.
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Affiliation(s)
- Ludong Zhao
- Jinzhou Medical University Postgraduate Training Base of Linyi People’s HospitalLinyi 276000, Shandong, P. R. China
- Department of General Surgery Center, Linyi People’s HospitalLinyi 276000, Shandong, P. R. China
| | - Jing Wang
- Department of Radiology, Linyi People’s HospitalLinyi 276000, Shandong, P. R. China
| | - Jinna Song
- Jinzhou Medical University Postgraduate Training Base of Linyi People’s HospitalLinyi 276000, Shandong, P. R. China
| | - Fenghua Zhang
- Department of Operating Room, Linyi People’s HospitalLinyi 276000, Shandong, P. R. China
| | - Jinghua Liu
- Jinzhou Medical University Postgraduate Training Base of Linyi People’s HospitalLinyi 276000, Shandong, P. R. China
- Department of General Surgery Center, Linyi People’s HospitalLinyi 276000, Shandong, P. R. China
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23
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Shi Z, Lu L. Magnetic Resonance Imaging Radiomics-Based Model for Prediction of Lymph Node Metastasis in Cervical Cancer. Int J Gen Med 2025; 18:1371-1381. [PMID: 40070678 PMCID: PMC11895691 DOI: 10.2147/ijgm.s491986] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2024] [Accepted: 02/11/2025] [Indexed: 03/14/2025] Open
Abstract
Background Cervical cancer remains a major cause of mortality among women globally, with lymph node metastasis (LNM) being a critical determinant of patient prognosis. Methods In this study, MRI scans from 153 cervical cancer patients between January 2018 and January 2024 were analyzed. The patients were assigned to two groups: 103 in the training cohort; 49 in the validation cohort. Radiomic features were extracted from T2-weighted imaging (T2WI) and apparent diffusion coefficient (ADC) maps. The ITK-SNAP software enabled three-dimensional manual segmentation of the tumor regions in cervical cancer to identify regions of interest (ROIs). The collected data was divided for the training and validation of the Support Vector Machine (SVM) model. Results The combined T2WI and ADC-based radiomics model exhibited robust diagnostic capabilities, achieving an area under the curve (AUC) of 0.804 (95% CI [0.712-0.890]) in the training cohort and an AUC of 0.811 (95% CI [0.721-0.902]) in the validation cohort. The nomogram that includes radiomic features, International Federation of Gynecology and Obstetrics (FIGO) stage, and LNM has a C-index of 0.895 (95% CI [0.821-0.962]) in the training cohort and a C-index of 0.916 (95% CI [0.825-0.987]) in the validation cohort. The C-statistics are all above 0.80, and the predicted variables are nearly aligned with the 45-degree line, consistent with the results shown in the calibration plot. This indicates that our model demonstrates good discrimination ability and satisfactory calibration. Conclusion The MRI radiomics model, leveraging T2WI combined with ADC maps, offers an effective method for predicting LNM in cervical cancer patients.
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Affiliation(s)
- Zhenjie Shi
- Medical Imaging Center, Xi’an People’s Hospital (Xi’an Fourth Hospital), Xi’an, Shaanxi Province, People’s Republic of China
| | - Longlong Lu
- Medical Imaging Center, Xi’an People’s Hospital (Xi’an Fourth Hospital), Xi’an, Shaanxi Province, People’s Republic of China
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24
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Feng H, Zhou K, Yuan Q, Liu Z, Zhang T, Chen H, Xu B, Sun Z, Han Z, Liu H, Yu S, Chen T, Li G, Zhou W, Yu J, Huang W, Jiang Y. Noninvasive Assessment of Vascular Endothelial Growth Factor and Prognosis in Gastric Cancer Through Radiomic Features. Clin Transl Gastroenterol 2025; 16:e00802. [PMID: 39787380 PMCID: PMC11932601 DOI: 10.14309/ctg.0000000000000802] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/24/2024] [Accepted: 12/04/2024] [Indexed: 01/12/2025] Open
Abstract
INTRODUCTION Gastric cancer (GC) is a leading cause of cancer-related deaths worldwide, with delayed diagnosis often limiting effective treatment options. This study introduces a novel, noninvasive radiomics-based approach using [18F] FDG PET/CT (fluorodeoxyglucose positron emission tomography/computed tomography) to predict vascular endothelial growth factor (VEGF) status and survival in patients with GC. The ability to noninvasively assess these parameters can significantly influence therapeutic decisions and outcomes. METHODS We conducted a retrospective study involving patients diagnosed with GC, stratified into training, validation, and test groups. Each patient underwent a [18F] FDG PET/CT scan, and radiomic features were extracted using dedicated software. A Radiomics Score (RS) was calculated, serving as a predictor for VEGF status. Statistical analyses included logistic regression and Cox proportional hazards models to evaluate the predictive power of RS on survival outcomes. RESULTS The developed radiomics model demonstrated high predictive accuracy, with the RS formula achieving an area under the receiver operating characteristic curve of 0.861 in the training cohort and 0.857 in the validation cohort for predicting VEGF status. The model also identified RS as an independent prognostic factor for survival, where higher RS values correlated with poorer survival rates. DISCUSSION The findings underscore the potential of [18F] FDG PET/CT radiomics in transforming the management of GC by providing a noninvasive means to assess tumor aggressiveness and prognosis through VEGF status. This model could facilitate earlier and more tailored therapeutic interventions, potentially improving survival outcomes in a disease marked by typically late diagnosis and limited treatment success.
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Affiliation(s)
- Hao Feng
- Department of General Surgery & Guangdong Provincial Key Laboratory of Precision Medicine for Gastrointestinal Tumor, Nanfang Hospital, Southern Medical University, Guangzhou, China
| | - Kangneng Zhou
- College of Computer Science, Nankai University, Tianjin, China
| | - Qingyu Yuan
- Department of Medical Imaging Center, Nanfang Hospital, Southern Medical University, Guangzhou, China
| | - Zhiwei Liu
- Department of PET Center, Nanfang Hospital, Southern Medical University, Guangzhou, China
| | - Taojun Zhang
- Department of General Surgery & Guangdong Provincial Key Laboratory of Precision Medicine for Gastrointestinal Tumor, Nanfang Hospital, Southern Medical University, Guangzhou, China
| | - Hao Chen
- Department of General Surgery & Guangdong Provincial Key Laboratory of Precision Medicine for Gastrointestinal Tumor, Nanfang Hospital, Southern Medical University, Guangzhou, China
| | - Benjamin Xu
- Lynbrook High School, San Jose, California, USA
| | - Zepang Sun
- Department of General Surgery & Guangdong Provincial Key Laboratory of Precision Medicine for Gastrointestinal Tumor, Nanfang Hospital, Southern Medical University, Guangzhou, China
| | - Zhen Han
- Department of General Surgery & Guangdong Provincial Key Laboratory of Precision Medicine for Gastrointestinal Tumor, Nanfang Hospital, Southern Medical University, Guangzhou, China
| | - Hao Liu
- Department of General Surgery & Guangdong Provincial Key Laboratory of Precision Medicine for Gastrointestinal Tumor, Nanfang Hospital, Southern Medical University, Guangzhou, China
| | - Shitong Yu
- Department of General Surgery & Guangdong Provincial Key Laboratory of Precision Medicine for Gastrointestinal Tumor, Nanfang Hospital, Southern Medical University, Guangzhou, China
| | - Tao Chen
- Department of General Surgery & Guangdong Provincial Key Laboratory of Precision Medicine for Gastrointestinal Tumor, Nanfang Hospital, Southern Medical University, Guangzhou, China
| | - Guoxin Li
- Beijing Tsinghua Changgung Hospital, School of Clinical Medicine, Tsinghua University, Beijing, China
| | - Wenlan Zhou
- Department of PET Center, Nanfang Hospital, Southern Medical University, Guangzhou, China
| | - Jiang Yu
- Department of General Surgery & Guangdong Provincial Key Laboratory of Precision Medicine for Gastrointestinal Tumor, Nanfang Hospital, Southern Medical University, Guangzhou, China
| | - Weicai Huang
- Department of Gastrointestinal Surgery, the First Affiliated Hospital of Guangzhou Medical University, Guangzhou, China
| | - Yuming Jiang
- Department of Radiation Oncology, Wake Forest University School of Medicine, Winston-Salem, North Carolina, USA
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25
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Wang N, Chen W, Wang H, Yao Y, Li Y, Li H, Liu X, Liu Z, Abouzied A, Jin X, Wang S, Bai X, Shan J, Li A. MRI-based radiomics for differention of aquaporin 4-immunoglobulin G-positive neuromyelitis optic spectrum disorder and anti myelin oligodendrocyte glycoprotein immunoglobulin G-associated disorder. Mult Scler Relat Disord 2025; 95:106315. [PMID: 39999591 DOI: 10.1016/j.msard.2025.106315] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2024] [Revised: 01/18/2025] [Accepted: 02/01/2025] [Indexed: 02/27/2025]
Abstract
OBJECTIVES This study was designed to develop and validate a radiomic nomogram for the differential diagnosis of myelin oligodendrocyte glycoprotein antibody-related disease (MOGAD) and aquaporin-4 immunoglobulin G-positive neuromyelitis optica spectrum disorder (AQP4+NMOSD). METHODS We retrospectively analysed data from a primary cohort consisting of 21 MOGAD and 63 AQP4+NMOSD patients and an external validation cohort comprising 10 MOGAD and 34 AQP4+NMOSD patients. Radiomic features were extracted from lesions of the cervical spinal cord and brainstem from sagittal T2-weighted MR images. We constructed a prediction model by integrating radiomic features with clinical data and evaluated its performance using calibration curves and decision curve analysis (DCA). RESULTS We developed a comprehensive nomogram that combines clinical and radiomic features to distinguish MOGAD from AQP4+NMOSD. The discriminative ability of the nomogram was quantified by the area under the receiver operating characteristic (ROC) curve (AUC), achieving values of 0.915 (95 % CI, 0.859-0.970) in the primary cohort and 0.837 (95 % CI, 0.715-0.959) in the validation cohort, indicating high diagnostic accuracy. The calibration analyses showed good concordance between the model predicted and actual outcomes. CONCLUSIONS This study successfully validated the radiomic feature model, demonstrating its superior performance in differentiating MOGAD from AQP4+NMOSD. The nomogram, integrating radiomic features with conventional imaging characteristics of brainstem and cervical cord lesions, significantly enhanced differentiation capability. Both models proved valuable in improving diagnostic accuracy, with radiomic features contributing most significantly.
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Affiliation(s)
- Ningning Wang
- Department of Neurology, Qilu Hospital of Shandong University, Jinan, Shandong, China; Department of Radiology, Zibo Prevention and Treatment hospital for Occupation diseases, Zibo, Shandong, China.
| | - Wei Chen
- Department of Radiology, Shandong First Medical University and Shandong Academy of Medical Sciences, Taian, Shandong, China.
| | - Huijun Wang
- Department of Neurology, Qilu Hospital of Shandong University, Jinan, Shandong, China.
| | - Yongjie Yao
- Department of Radiology, Richao City Hospital of TCM, Rizhao, China.
| | - Yuxin Li
- Department of Radiology, Huashan Hospital, Fudan University, Shanghai, Hospital B, China.
| | - Haiqing Li
- Department of Radiology, Huashan Hospital, Fudan University, Shanghai, Hospital B, China.
| | - Xueling Liu
- Department of Radiology, Huashan Hospital, Fudan University, Shanghai, Hospital B, China.
| | - Zhuyun Liu
- Department of Imaging, Linyi Central Hospital, Linyi, China.
| | - Ahmed Abouzied
- Department of Neurology, Qilu Hospital of Shandong University, Jinan, Shandong, China.
| | - Xiaodi Jin
- Department of Radiology, The Affiliated Weihai Second Municipal Hospital of Qingdao University,Weihai, China; Department of Radiology, Jinan Qilu Hospital of Shandong University, Jinan, China.
| | - Shengjun Wang
- Department of Neurology, Qilu Hospital of Shandong University No.107, WenHuaxilu, Lixia District, Jinan, Shandong, 250012, China.
| | - Xue Bai
- Department of Radiology, Qilu Hospital of Shandong University No.107, WenHuaxilu, Lixia District, Jinan, Shandong, 250012, China.
| | - Jingli Shan
- Department of Neurology, Qilu Hospital of Shandong University No.107, WenHuaxilu, Lixia District, Jinan, Shandong, 250012, China.
| | - Anning Li
- Department of Radiology, Qilu Hospital of Shandong University No.107, WenHuaxilu, Lixia District, Jinan, Shandong, 250012, China.
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Santos CS, Amorim-Lopes M. Externally validated and clinically useful machine learning algorithms to support patient-related decision-making in oncology: a scoping review. BMC Med Res Methodol 2025; 25:45. [PMID: 39984835 PMCID: PMC11843972 DOI: 10.1186/s12874-025-02463-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2023] [Accepted: 01/03/2025] [Indexed: 02/23/2025] Open
Abstract
BACKGROUND This scoping review systematically maps externally validated machine learning (ML)-based models in cancer patient care, quantifying their performance, and clinical utility, and examining relationships between models, cancer types, and clinical decisions. By synthesizing evidence, this study identifies, strengths, limitations, and areas requiring further research. METHODS The review followed the Joanna Briggs Institute's methodology, Preferred Reporting Items for Systematic Reviews and Meta-Analyses extension for Scoping Reviews guidelines, and the Population, Concept, and Context mnemonic. Searches were conducted across Embase, IEEE Xplore, PubMed, Scopus, and Web of Science (January 2014-September 2022), targeting English-language quantitative studies in Q1 journals (SciMago Journal and Country Ranking > 1) that used ML to evaluate clinical outcomes for human cancer patients with commonly available data. Eligible models required external validation, clinical utility assessment, and performance metric reporting. Studies involving genetics, synthetic patients, plants, or animals were excluded. Results were presented in tabular, graphical, and descriptive form. RESULTS From 4023 deduplicated abstracts and 636 full-text reviews, 56 studies (2018-2022) met the inclusion criteria, covering diverse cancer types and applications. Convolutional neural networks were most prevalent, demonstrating high performance, followed by gradient- and decision tree-based algorithms. Other algorithms, though underrepresented, showed promise. Lung and digestive system cancers were most frequently studied, focusing on diagnosis and outcome predictions. Most studies were retrospective and multi-institutional, primarily using image-based data, followed by text-based and hybrid approaches. Clinical utility assessments involved 499 clinicians and 12 tools, indicating improved clinician performance with AI assistance and superior performance to standard clinical systems. DISCUSSION Interest in ML-based clinical decision-making has grown in recent years alongside increased multi-institutional collaboration. However, small sample sizes likely impacted data quality and generalizability. Persistent challenges include limited international validation across ethnicities, inconsistent data sharing, disparities in validation metrics, and insufficient calibration reporting, hindering model comparison reliability. CONCLUSION Successful integration of ML in oncology decision-making requires standardized data and methodologies, larger sample sizes, greater transparency, and robust validation and clinical utility assessments. OTHER Financed by FCT-Fundação para a Ciência e a Tecnologia (Portugal, project LA/P/0063/2020, grant 2021.09040.BD) as part of CSS's Ph.D. This work was not registered.
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Affiliation(s)
- Catarina Sousa Santos
- Institute for Systems and Computer Engineering, Technology and Science (INESC TEC), Porto, Portugal.
| | - Mário Amorim-Lopes
- Institute for Systems and Computer Engineering, Technology and Science (INESC TEC), Porto, Portugal
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Auer H, Cabalo DG, Rodríguez-Cruces R, Benkarim O, Paquola C, DeKraker J, Wang Y, Valk SL, Bernhardt BC, Royer J. From histology to macroscale function in the human amygdala. eLife 2025; 13:RP101950. [PMID: 39945516 PMCID: PMC11825128 DOI: 10.7554/elife.101950] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/16/2025] Open
Abstract
The amygdala is a subcortical region in the mesiotemporal lobe that plays a key role in emotional and sensory functions. Conventional neuroimaging experiments treat this structure as a single, uniform entity, but there is ample histological evidence for subregional heterogeneity in microstructure and function. The current study characterized subregional structure-function coupling in the human amygdala, integrating post-mortem histology and in vivo MRI at ultra-high fields. Core to our work was a novel neuroinformatics approach that leveraged multiscale texture analysis as well as non-linear dimensionality reduction techniques to identify salient dimensions of microstructural variation in a 3D post-mortem histological reconstruction of the human amygdala. We observed two axes of subregional variation in this region, describing inferior-superior as well as mediolateral trends in microstructural differentiation that in part recapitulated established atlases of amygdala subnuclei. Translating our approach to in vivo MRI data acquired at 7 Tesla, we could demonstrate the generalizability of these spatial trends across 10 healthy adults. We then cross-referenced microstructural axes with functional blood-oxygen-level dependent (BOLD) signal analysis obtained during task-free conditions, and revealed a close association of structural axes with macroscale functional network embedding, notably the temporo-limbic, default mode, and sensory-motor networks. Our novel multiscale approach consolidates descriptions of amygdala anatomy and function obtained from histological and in vivo imaging techniques.
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Affiliation(s)
- Hans Auer
- Montreal Neurological Institute and Hospital, McGill UniversityMontrealCanada
| | - Donna Gift Cabalo
- Montreal Neurological Institute and Hospital, McGill UniversityMontrealCanada
| | | | - Oualid Benkarim
- Montreal Neurological Institute and Hospital, McGill UniversityMontrealCanada
| | - Casey Paquola
- Institute for Neuroscience and Medicine, Forschungszentrum JülichJülichGermany
| | - Jordan DeKraker
- Montreal Neurological Institute and Hospital, McGill UniversityMontrealCanada
| | - Yezhou Wang
- Montreal Neurological Institute and Hospital, McGill UniversityMontrealCanada
| | - Sofie Louise Valk
- Institute for Neuroscience and Medicine, Forschungszentrum JülichJülichGermany
- Max Planck Institute for Human Cognitive and Brain SciencesLeipzigGermany
- Institute of Systems Neuroscience, Heinrich Heine University DüsseldorfDüsseldorfGermany
| | - Boris C Bernhardt
- Montreal Neurological Institute and Hospital, McGill UniversityMontrealCanada
| | - Jessica Royer
- Montreal Neurological Institute and Hospital, McGill UniversityMontrealCanada
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28
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Tompkins AG, Gray ZN, Dadey RE, Zenkin S, Batavani N, Newman S, Amouzegar A, Ak M, Ak N, Pak TY, Peddagangireddy V, Mamindla P, Amjadzadeh M, Behr S, Goodman A, Ploucha DL, Kirkwood JM, Zarour HM, Najjar YG, Davar D, Tatsuoka C, Colen RR, Luke JJ, Bao R. Radiomic analysis of patient and interorgan heterogeneity in response to immunotherapies and BRAF-targeted therapy in metastatic melanoma. J Immunother Cancer 2025; 13:e009568. [PMID: 39939139 PMCID: PMC11822426 DOI: 10.1136/jitc-2024-009568] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2024] [Accepted: 01/21/2025] [Indexed: 02/14/2025] Open
Abstract
Variability in treatment response may be attributable to organ-level heterogeneity in tumor lesions. Radiomic analysis of medical images can elucidate non-invasive biomarkers of clinical outcome. Organ-specific radiomic comparison across immunotherapies and targeted therapies has not been previously reported. We queried the UPMC Hillman Cancer Center registry for patients with metastatic melanoma (MEL) treated with immune checkpoint inhibitors (ICI) (anti-programmed cell death protein-1 (PD-1)/cytotoxic T-lymphocyte associated protein 4 (CTLA-4) (ipilimumab+nivolumab; I+N) or anti-PD-1 monotherapy) or BRAF-targeted therapy. The best overall response was measured using Response Evaluation Criteria in Solid Tumors V.1.1. Lesions were segmented into discrete volume-of-interest with 400 radiomics features extracted. Overall and organ-specific machine-learning models were constructed to predict disease control (DC) versus progressive disease (PD) using XGBoost. 291 patients with MEL were identified, including 242 ICI (91 I+N, 151 PD-1) and 49 BRAF. 667 metastases were analyzed, including 541 ICI (236 I+N, 305 PD-1) and 126 BRAF. Across cohorts, baseline demographics included 39-47% women, 24%-29% M1C, 24-46% M1D, and 61-80% with elevated lactate dehydrogenase. Among ICI patients experiencing DC, the organs with the greatest reduction were liver (-66%±8%; mean±SEM) and lung (-63%±5%). For patients with multiple same-organ target lesions, the highest interlesion heterogeneity was observed in brain among patients who received ICI while no intraorgan heterogeneity was observed in BRAF. 221 ICI patients were included for radiomic modeling, consisting of 86 I+N and 135 PD-1. Models consisting of optimized radiomic signatures classified DC/PD across I+N (area under curve (AUC)=0.85) and PD-1 (0.71) and within individual organ sites (AUC=0.72~0.94). Integration of clinical variables improved the models' performance. Comparison of models between treatments and across organ sites suggested mostly non-overlapping DC or PD features. Skewness, kurtosis, and informational measure of correlation (IMC) were among the radiomic features shared between overall response models. Kurtosis and IMC were also used by multiple organ-site models. In conclusion, differential organ-specific response was observed across BRAF and ICI with within organ heterogeneity observed for ICI but not for BRAF. Radiomic features of organ-specific response demonstrated little overlap. Integrating clinical factors with radiomics improves the prediction of disease course outcome and prediction of tumor heterogeneity.
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Affiliation(s)
- Alexandra G Tompkins
- UPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA
- Department of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
| | - Zane N Gray
- UPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA
- Department of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
| | - Rebekah E Dadey
- UPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA
- Department of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
| | - Serafettin Zenkin
- UPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA
- Department of Radiology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
| | - Nasim Batavani
- UPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA
- Department of Radiology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
| | - Sarah Newman
- UPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA
- Department of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
| | - Afsaneh Amouzegar
- UPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA
- Department of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
| | - Murat Ak
- UPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA
- Department of Radiology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
| | - Nursima Ak
- UPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA
- Department of Radiology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
| | - Taha Yasin Pak
- UPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA
- Department of Radiology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
| | - Vishal Peddagangireddy
- UPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA
- Department of Radiology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
| | - Priyadarshini Mamindla
- UPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA
- Department of Radiology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
| | - Mohammadreza Amjadzadeh
- UPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA
- Department of Radiology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
| | - Sarah Behr
- UPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA
| | - Amy Goodman
- UPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA
| | | | - John M Kirkwood
- UPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA
- Department of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
| | - Hassane M Zarour
- UPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA
- Department of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
- Department of Immunology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
| | - Yana G Najjar
- UPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA
- Department of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
| | - Diwakar Davar
- UPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA
- Department of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
| | - Curtis Tatsuoka
- UPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA
- Department of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
| | - Rivka R Colen
- UPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA
- Department of Radiology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
| | - Jason John Luke
- UPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA
- Department of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
| | - Riyue Bao
- UPMC Hillman Cancer Center, Pittsburgh, Pennsylvania, USA
- Department of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
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29
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Shang H, Feng T, Han D, Liang F, Zhao B, Xu L, Cao Z. Deep learning and radiomics for gastric cancer serosal invasion: automated segmentation and multi-machine learning from two centers. J Cancer Res Clin Oncol 2025; 151:60. [PMID: 39900688 PMCID: PMC11790706 DOI: 10.1007/s00432-025-06117-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2024] [Accepted: 01/22/2025] [Indexed: 02/05/2025]
Abstract
OBJECTIVE The objective of this study is to develop an automated method for segmenting spleen computed tomography (CT) images using a deep learning model. This approach is intended to address the limitations of manual segmentation, which is known to be susceptible to inter-observer variability. Subsequently, a prediction model of gastric cancer (GC) serosal invasion was constructed in conjunction with radiomics and deep learning features, and a nomogram was generated to explore the clinical guiding significance. METHODS This study enrolled 311 patients from two centers with pathologically confirmed of GC. we employed a deep learning model, U-Mamba, to obtain fully automatic segmentation of the spleen CT images. Subsequently, radiomics features and deep learning features were extracted from the entire spleen CT images, and significant features were identified through dimensionality reduction. The clinical features, radiomic features, and deep learning features were organized and integrated, and five machine learning methods were employed to develop 15 predictive models. Ultimately, the model exhibiting superior performance was presented in the form of a nomogram. RESULTS A total of 18 radiomics features, 30 deep learning features, and 1 clinical features were deemed valuable. The DLRA model demonstrated superior discriminative capacity relative to other models. A nomogram was constructed based on the logistic clinical model to facilitate the usage and verification of the clinical model. CONCLUSION Radiomics and deep learning features derived from automated spleen segmentation to construct a nomogram demonstrate efficacy in predicting serosal invasion in GC. Concurrently, fully automated segmentation provides a novel and reproducible approach for radiomics research.
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Affiliation(s)
- Hui Shang
- Affiliated Hospital of Chengde Medical University, Chengde, 067000, Hebei Province, China
| | - Tao Feng
- Affiliated Hospital of Chengde Medical University, Chengde, 067000, Hebei Province, China
| | - Dong Han
- Affiliated Hospital of Chengde Medical University, Chengde, 067000, Hebei Province, China
| | - Fengying Liang
- Affiliated Hospital of Chengde Medical University, Chengde, 067000, Hebei Province, China
| | - Bin Zhao
- Affiliated Hospital of Chengde Medical University, Chengde, 067000, Hebei Province, China
| | - Lihang Xu
- Affiliated Hospital of Chengde Medical University, Chengde, 067000, Hebei Province, China
| | - Zhendong Cao
- Affiliated Hospital of Chengde Medical University, Chengde, 067000, Hebei Province, China.
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30
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Sghedoni R, Origgi D, Cucurachi N, Minischetti GC, Alio D, Savini G, Botta F, Marzi S, Aiello M, Rancati T, Cusumano D, Politi LS, Didonna V, Massafra R, Petrillo A, Esposito A, Imparato S, Anemoni L, Bortolotto C, Preda L, Boldrini L. Stability of radiomic features in magnetic resonance imaging of the female pelvis: A multicentre phantom study. Phys Med 2025; 130:104895. [PMID: 39793255 DOI: 10.1016/j.ejmp.2025.104895] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/17/2024] [Revised: 12/18/2024] [Accepted: 01/03/2025] [Indexed: 01/13/2025] Open
Affiliation(s)
- Roberto Sghedoni
- Medical Physics Unit, Azienda USL - IRCCS di Reggio Emilia, Viale Risorgimento 80, Reggio Emilia, Italy.
| | - Daniela Origgi
- Medical Physics Unit, IEO, European Institute of Oncology, IRCCS, Via Ripamonti 435, Milano, Italy
| | - Noemi Cucurachi
- Medical Physics Unit, Azienda USL - IRCCS di Reggio Emilia, Viale Risorgimento 80, Reggio Emilia, Italy
| | - Giuseppe Castiglioni Minischetti
- Medical Physics Unit, IEO, European Institute of Oncology, IRCCS, Via Ripamonti 435, Milano, Italy; School of Medical Physics, University of Milan, Via Celoria 16, 20133 Milan, Italy
| | - Davide Alio
- Medical Physics Unit, IEO, European Institute of Oncology, IRCCS, Via Ripamonti 435, Milano, Italy; School of Medical Physics, University of Milan, Via Celoria 16, 20133 Milan, Italy
| | - Giovanni Savini
- Department of Biomedical Sciences, Humanitas University, Via R. Levi Montalcini 4, 20072, Pieve Emanuele, Milan, Italy; Neuroradiology Unit, IRCCS Humanitas Research Hospital, Via Manzoni 56, 20089 Rozzano, Milan, Italy
| | - Francesca Botta
- Medical Physics Unit, IEO, European Institute of Oncology, IRCCS, Via Ripamonti 435, Milano, Italy
| | - Simona Marzi
- Medical Physics Laboratory, IRCCS Regina Elena National Cancer Institute, Via Elio Chianesi 53, 00144 Roma, Italy
| | - Marco Aiello
- IRCCS SYNLAB SDN, Via Francesco Crispi, 8, 80121 Napoli, Italy
| | - Tiziana Rancati
- Data Science Unit, Fondazione IRCCS Istituto Nazionale dei Tumori, Via Giacomo Venezian, 1, 20133 Milano, Italy
| | - Davide Cusumano
- UO Fisica Medica e Radioprotezione, Mater Olbia Hospital, SS 125 Orientale Sarda, 07026 Olbia, Italy
| | - Letterio Salvatore Politi
- Department of Biomedical Sciences, Humanitas University, Via R. Levi Montalcini 4, 20072, Pieve Emanuele, Milan, Italy; Neuroradiology Unit, IRCCS Humanitas Research Hospital, Via Manzoni 56, 20089 Rozzano, Milan, Italy
| | - Vittorio Didonna
- I.R.C.C.S. Istituto Tumori "Giovanni Paolo II", Viale Orazio Flacco 65, Bari 70124, Italy
| | - Raffaella Massafra
- I.R.C.C.S. Istituto Tumori "Giovanni Paolo II", Viale Orazio Flacco 65, Bari 70124, Italy
| | - Antonella Petrillo
- Istituto Nazionale Tumori IRCCS Fondazione Pascale, Via M. Semmola, 52, 80131 Napoli, Italy
| | - Antonio Esposito
- Experimetal Imaging Center, IRCCS San Raffaele Scientific Institute, Via Olgettina, 60, 20132 Milano, Italy; Vita-Salute San Raffaele University, School of Medicine, Via Olgettina, 58, 20132 Milano, Italy
| | - Sara Imparato
- Unità di Diagnostica per Immagini, CNAO, Via Erminio Borloni, 1, 27100 Pavia, Italy
| | - Luca Anemoni
- Unità di Diagnostica per Immagini, CNAO, Via Erminio Borloni, 1, 27100 Pavia, Italy
| | - Chandra Bortolotto
- Diagnostic Imaging and Radiotherapy Unit, Department of Clinical, Surgical, Diagnostic, and Pediatric Sciences, University of Pavia, Viale Golgi 19, 27100 Pavia, Italy; Radiology Institute, Fondazione IRCCS Policlinico San Matteo, Viale Golgi 19, 27100 Pavia, Italy
| | - Lorenzo Preda
- Diagnostic Imaging and Radiotherapy Unit, Department of Clinical, Surgical, Diagnostic, and Pediatric Sciences, University of Pavia, Viale Golgi 19, 27100 Pavia, Italy; Radiology Institute, Fondazione IRCCS Policlinico San Matteo, Viale Golgi 19, 27100 Pavia, Italy
| | - Luca Boldrini
- Dipartimento di Diagnostica per Immagini e Radioterapia Oncologica, Fondazione Policlinico Universitario "A. Gemelli" IRCCS, Largo Agostino Gemelli 8, 00168 Roma, Italy
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31
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Fusco R, Granata V, Setola SV, Trovato P, Galdiero R, Mattace Raso M, Maio F, Porto A, Pariante P, Cerciello V, Sorgente E, Pecori B, Castaldo M, Izzo F, Petrillo A. The application of radiomics in cancer imaging with a focus on lung cancer, renal cell carcinoma, gastrointestinal cancer, and head and neck cancer: A systematic review. Phys Med 2025; 130:104891. [PMID: 39787678 DOI: 10.1016/j.ejmp.2025.104891] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/08/2024] [Revised: 12/31/2024] [Accepted: 01/02/2025] [Indexed: 01/12/2025] Open
Abstract
PURPOSE To study the application of radiomics in cancer imaging with a focus on lung cancer, renal cell carcinoma, gastrointestinal cancer, and head and neck cancer. METHODS Different electronic databases were considered. Articles published in the last five years were analyzed (January 2019 and December 2023). Papers were selected by two investigators with over 15 years of experience in Radiomics analysis in cancer imaging. The methodological quality of each radiomics study was performed using the Radiomic Quality Score (RQS) by two different readers in consensus and then by a third operator to solve disagreements between the two readers. RESULTS 19 articles are included in the review. Among the analyzed studies, only one study achieved an RQS of 18 reporting multivariable analyzes with also non-radiomics features and using the validation phase considering two datasets from two distinct institutes and open science and data domain. CONCLUSION This informative review has brought attention to the increasingly consolidated potential of Radiomics, although there are still several aspects to be evaluated before the transition to routine clinical practice. There are several challenges to address, including the need for standardization at all stages of the workflow and the potential for cross-site validation using heterogeneous real-world datasets. It will be necessary to establish and promote an imaging data acquisition protocol, conduct multicenter prospective quality control studies, add scanner differences and vendor-dependent characteristics; to collect images of individuals at additional time points, to report calibration statistics.
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Affiliation(s)
- Roberta Fusco
- Division of Radiology, "Istituto Nazionale Tumori IRCCS Fondazione Pascale, IRCCS di Napoli, 80131 Naples, Italy
| | - Vincenza Granata
- Division of Radiology, "Istituto Nazionale Tumori IRCCS Fondazione Pascale, IRCCS di Napoli, 80131 Naples, Italy.
| | - Sergio Venanzio Setola
- Division of Radiology, "Istituto Nazionale Tumori IRCCS Fondazione Pascale, IRCCS di Napoli, 80131 Naples, Italy
| | - Piero Trovato
- Division of Radiology, "Istituto Nazionale Tumori IRCCS Fondazione Pascale, IRCCS di Napoli, 80131 Naples, Italy
| | - Roberta Galdiero
- Division of Radiology, "Istituto Nazionale Tumori IRCCS Fondazione Pascale, IRCCS di Napoli, 80131 Naples, Italy
| | - Mauro Mattace Raso
- Division of Radiology, "Istituto Nazionale Tumori IRCCS Fondazione Pascale, IRCCS di Napoli, 80131 Naples, Italy
| | - Francesca Maio
- Division of Radiology, "Istituto Nazionale Tumori IRCCS Fondazione Pascale, IRCCS di Napoli, 80131 Naples, Italy
| | - Annamaria Porto
- Division of Radiology, "Istituto Nazionale Tumori IRCCS Fondazione Pascale, IRCCS di Napoli, 80131 Naples, Italy
| | - Paolo Pariante
- Division of Radiology, "Istituto Nazionale Tumori IRCCS Fondazione Pascale, IRCCS di Napoli, 80131 Naples, Italy
| | - Vincenzo Cerciello
- Division of Health Physics, "Istituto Nazionale Tumori IRCCS Fondazione Pascale, IRCCS di Napoli, 80131 Naples, Italy
| | - Eugenio Sorgente
- Division of Radiation protection and innovative technology, Istituto Nazionale Tumori IRCCS Fondazione Pascale, IRCCS di Napoli, 80131 Naples, Italy
| | - Biagio Pecori
- Division of Radiation protection and innovative technology, Istituto Nazionale Tumori IRCCS Fondazione Pascale, IRCCS di Napoli, 80131 Naples, Italy
| | - Mimma Castaldo
- Unit of "Progettazione e Manutenzione Edile ed impianti", Istituto Nazionale Tumori IRCCS Fondazione Pascale, IRCCS di Napoli, 80131 Naples, Italy
| | - Francesco Izzo
- Division of Epatobiliary Surgical Oncology, Istituto Nazionale Tumori IRCCS Fondazione Pascale, IRCCS di Napoli, 80131 Naples, Italy
| | - Antonella Petrillo
- Division of Radiology, "Istituto Nazionale Tumori IRCCS Fondazione Pascale, IRCCS di Napoli, 80131 Naples, Italy
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Jiang X, Hu J, Jiang Q, Zhou T, Yao F, Sun Y, Zhou C, Ma Q, Zhao J, Shi K, Yang W, Zhou X, Wang Y, Liu S, Xin X, Fan L. CT-based whole lung radiomics nomogram to identify middle-aged and elderly COVID-19 patients at high risk of progressing to critical disease. J Appl Clin Med Phys 2025; 26:e14562. [PMID: 39611805 PMCID: PMC11995421 DOI: 10.1002/acm2.14562] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2024] [Revised: 08/19/2024] [Accepted: 09/16/2024] [Indexed: 11/30/2024] Open
Abstract
BACKGROUND COVID-19 remains widespread and poses a threat to people's physical and mental health, especially middle-aged and elderly individuals. Early identification of COVID-19 patients at high risk of progressing to critical disease helps improve overall patient outcomes and healthcare efficiency. PURPOSE To develop a radiomics nomogram to predict the risk of newly admitted middle-aged and elderly COVID-19 patients progressing to critical disease. METHODS A total of 794 patients (aged 40 years or above) were retrospectively included in the study from two institutions, all of them were with non-critical COVID-19 on admission. At follow-up, patients were divided into non-critical group and critical group. About 443 patients (384 non-critical and 59 critical) from the first hospital were randomly assigned to the training (n = 311) and internal validation (n = 132) set in a 7:3 ratio. Additionally, an independent external cohort of 351 patients (292 non-critical and 59 critical) from another hospital was evaluated. Radiomics signatures and clinical indicators were used to build a radiomics model and a clinical model after computed tomography (CT) image processing, CT whole-lung segmentation, feature extraction, and feature selection. The radiomics nomogram model integrated radiomics model and clinical model. The receiver operating characteristic curve (AUC) was used to assess the performance of the proposed models. Calibration curves and decision curve analysis were used to assess the performance of the radiomics nomogram. RESULTS For the training, internal validation, and external validation sets, the AUC values of the radiomic nomogram for the prediction of COVID-19 progression were 0.916, 0.917, and 0.890, respectively. Calibration curves indicated that there was no significant departure between prediction and observation in three sets. The decision curve image demonstrated the clinical utility of the nomogram model. CONCLUSIONS Our nomogram model incorporates radiomics features and clinical indicators, it provides a new pathway to increase predictive accuracy or clinical utility, further helping to provide personalized management for middle-aged and elderly patients with COVID-19.
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Affiliation(s)
- Xin'ang Jiang
- Department of RadiologySecond Affiliated Hospital of Naval Medical UniversityShanghaiChina
| | - Jun Hu
- Department of RadiologyNanjing Drum Tower HospitalThe Affiliated Hospital of Nanjing University Medical SchoolNanjingJiangsuChina
| | - Qinling Jiang
- Department of RadiologySecond Affiliated Hospital of Naval Medical UniversityShanghaiChina
| | - Taohu Zhou
- Department of RadiologySecond Affiliated Hospital of Naval Medical UniversityShanghaiChina
- School of Medical ImagingWeifang Medical UniversityWeifangShandongChina
| | - Fei Yao
- Department of RadiologySecond Affiliated Hospital of Naval Medical UniversityShanghaiChina
- School of MedicineShanghai UniversityShanghaiChina
| | - Yi Sun
- Department of RadiologyNanjing Drum Tower HospitalThe Affiliated Hospital of Nanjing University Medical SchoolNanjingJiangsuChina
| | - Chao Zhou
- Department of RadiologyNanjing Drum Tower HospitalThe Affiliated Hospital of Nanjing University Medical SchoolNanjingJiangsuChina
| | - Qianyun Ma
- Department of RadiologySecond Affiliated Hospital of Naval Medical UniversityShanghaiChina
| | - Jingyi Zhao
- Department of RadiologySecond Affiliated Hospital of Naval Medical UniversityShanghaiChina
| | - Kang Shi
- Department of RadiologyNanjing Drum Tower HospitalThe Affiliated Hospital of Nanjing University Medical SchoolNanjingJiangsuChina
| | - Wen Yang
- Department of RadiologyNanjing Drum Tower HospitalThe Affiliated Hospital of Nanjing University Medical SchoolNanjingJiangsuChina
| | - Xiuxiu Zhou
- Department of RadiologySecond Affiliated Hospital of Naval Medical UniversityShanghaiChina
| | - Yun Wang
- Department of RadiologySecond Affiliated Hospital of Naval Medical UniversityShanghaiChina
| | - Shiyuan Liu
- Department of RadiologySecond Affiliated Hospital of Naval Medical UniversityShanghaiChina
| | - Xiaoyan Xin
- Department of RadiologyNanjing Drum Tower HospitalThe Affiliated Hospital of Nanjing University Medical SchoolNanjingJiangsuChina
| | - Li Fan
- Department of RadiologySecond Affiliated Hospital of Naval Medical UniversityShanghaiChina
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Yamlome P, Jordan JH. Effect of magnetic field strength and segmentation variability on the reproducibility and repeatability of radiomic texture features in cardiovascular magnetic resonance parametric mapping. Int J Cardiovasc Imaging 2025; 41:325-337. [PMID: 39776324 PMCID: PMC11811471 DOI: 10.1007/s10554-024-03312-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/14/2024] [Accepted: 12/15/2024] [Indexed: 01/11/2025]
Abstract
Our study aims to assess the robustness of myocardial radiomic texture features (RTF) to segmentation variability and variations across scanners with different field strengths, addressing concerns about reliability in clinical practices. We conducted a retrospective analysis on 45 pairs of CMR T1 maps from 15 healthy volunteers using 1.5 T and 3 T Siemens scanners. Manual left ventricular myocardium segmentation and a deep learning-based model with Monte Carlo Dropout generated masks with different levels of variability and 1023 RTFs extracted from each region of interest (ROI). Reproducibility: the extent to which RTFs extracted from 1.5 T and 3 T images are consistent, and repeatability: the extent to which RTFs extracted from multiple segmentation runs at the same field strength agree with each other, were measured by the intraclass correlation coefficient (ICC). We categorized ICC values as excellent, good, moderate, and poor. We reported the proportion of RTFs that fell in each category. The proportion of RTFs with excellent repeatability decreased as the proportion of ROI pixels in congruence across segmentation runs decreased. Up to 31% of RTFs showed excellent repeatability, while 35% showed good repeatability across segmentation runs from the manually generated masks. Across scanners (i.e., 1.5 T vs 3 T), only 7% exhibited good reproducibility. While our results demonstrate RTF sensitivity to differences in field strength and segmentation variability, we identified certain preprocessing filters and feature classes that are less sensitive to these variations and, as such, may be good candidates for imaging biomarkers or building machine-learning models.
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Affiliation(s)
- Pascal Yamlome
- Department of Biomedical Engineering, College of Engineering, Virginia Commonwealth University, Richmond, VA, USA
| | - Jennifer H Jordan
- Department of Biomedical Engineering, College of Engineering, Virginia Commonwealth University, Richmond, VA, USA.
- Division of Cardiology, Pauley Heart Center at Virginia Commonwealth University, Richmond, VA, USA.
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34
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Ahanger AB, Aalam SW, Masoodi TA, Shah A, Khan MA, Bhat AA, Assad A, Macha MA, Bhat MR. Radiogenomics and machine learning predict oncogenic signaling pathways in glioblastoma. J Transl Med 2025; 23:121. [PMID: 39871351 PMCID: PMC11773707 DOI: 10.1186/s12967-025-06101-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2024] [Accepted: 01/08/2025] [Indexed: 01/29/2025] Open
Abstract
BACKGROUND Glioblastoma (GBM) is a highly aggressive brain tumor associated with a poor patient prognosis. The survival rate remains low despite standard therapies, highlighting the urgent need for novel treatment strategies. Advanced imaging techniques, particularly magnetic resonance imaging (MRI), are crucial in assessing GBM. Disruptions in various oncogenic signaling pathways, such as Receptor Tyrosine Kinase (RTK)-Ras-Extracellular signal-regulated kinase (ERK) signaling, Phosphoinositide 3- Kinases (PI3Ks), tumor protein p53 (TP53), and Neurogenic locus notch homolog protein (NOTCH), contribute to the development of different tumor types, each exhibiting distinct morphological and phenotypic features that can be observed at a microscopic level. However, identifying genetic abnormalities for targeted therapy often requires invasive procedures, prompting exploration into non-invasive approaches like radiogenomics. This study explores the utility of radiogenomics and machine learning (ML) in predicting these oncogenic signaling pathways in GBM patients. METHODS We collected post-operative MRI scans (T1w, T1c, FLAIR, T2w) from the BRATS-19 dataset, including scans from patients with both GBM and LGG, linked to genetic and clinical data via TCGA and CPTAC. Signaling pathway data was manually extracted from cBioPortal. Radiomic features were extracted from four MRI modalities using PyRadiomics. Dimensionality reduction and feature selection were applied and Data imbalance was addressed with SMOTE. Five ML models were trained to predict signaling pathways, with Grid Search optimizing hyperparameters and 5-fold cross-validation ensuring unbiased performance. Each model's performance was evaluated using various metrics on test data. RESULTS Our results showed a positive association between most signaling pathways and the radiomic features derived from MRI scans. The best models achieved high AUC scores, namely 0.7 for RTK-RAS, 0.8 for PI3K, 0.75 for TP53, and 0.4 for NOTCH, and therefore, demonstrated the potential of ML models in accurately predicting oncogenic signaling pathways from radiomic features, thereby informing personalized therapeutic approaches and improving patient outcomes. CONCLUSION We present a novel approach for the non-invasive prediction of deregulation in oncogenic signaling pathways in glioblastoma (GBM) by integrating radiogenomic data with machine learning models. This research contributes to advancing precision medicine in GBM management, highlighting the importance of integrating radiomics with genomic data to understand tumor behavior and treatment response better.
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Affiliation(s)
- Abdul Basit Ahanger
- Department of Computer Science, Islamic University of Science and Technology (IUST), Kashmir, 192122, India
| | - Syed Wajid Aalam
- Department of Computer Science, Islamic University of Science and Technology (IUST), Kashmir, 192122, India
| | | | - Asma Shah
- Watson-Crick Centre for Molecular Medicine, Islamic University of Science and Technology (IUST), Kashmir, 192122, India
| | - Meraj Alam Khan
- DigiBiomics Inc, 3052 Owls Foot Drive, Mississauga, ON, Canada
| | - Ajaz A Bhat
- Department of Human Genetics-Precision Medicine in Diabetes, Obesity and Cancer Program, Sidra Medicine, Doha, Qatar
| | - Assif Assad
- Department of Computer Science and Engineering, Islamic University of Science and Technology (IUST), Kashmir, 192122, India
| | - Muzafar Ahmad Macha
- Watson-Crick Centre for Molecular Medicine, Islamic University of Science and Technology (IUST), Kashmir, 192122, India.
| | - Muzafar Rasool Bhat
- Department of Computer Science, Islamic University of Science and Technology (IUST), Kashmir, 192122, India.
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Chen K, Li X, Liu L, Wang B, Liang W, Chen J, Gao M, Huang X, Liu B, Sun X, Yang T, Zhao X, He W, Luo Y, Huang J, Lin T, Zhong W. Correlation of noninvasive imaging of tumour-infiltrating lymphocytes with survival and BCG immunotherapy response in patients with bladder cancer: a multicentre cohort study. Int J Surg 2025; 111:920-931. [PMID: 40053821 PMCID: PMC11745626 DOI: 10.1097/js9.0000000000001999] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2024] [Accepted: 07/15/2024] [Indexed: 03/09/2025]
Abstract
BACKGROUND Tumour-infiltrating lymphocytes (TILs) are strongly correlated with the prognosis and immunotherapy response in bladder cancer. The TIL status is typically assessed through microscopy as part of tissue pathology. Here, the authors developed Rad-TIL model, a novel radiomics model, to predict TIL status in patients with bladder cancer. MATERIAL AND METHODS The authors enrolled 1089 patients with bladder cancer and developed the Rad-TIL model by using a machine-learning method based on computed tomography (CT) images. The authors applied a radiogenomics cohort to reveal the key pathways underlying the Rad-TIL model. Finally, the authors used an independent treatment cohort to evaluate the predictive efficacy of the Rad-TIL model for Bacillus Calmette-Guérin (BCG) immunotherapy. RESULTS The authors developed the Rad-TIL model by integrating tumoral and peritumoral features on CT images and obtained areas under the receiver operating characteristic curves of 0.844 and 0.816 in the internal and external validation cohorts, respectively. Patients were stratified into two groups based on the predicted radiomics score of TILs (RSTIL). RSTIL exhibited prognostic significance for both overall and cancer-specific survival in each cohort (hazard ratios: 2.27-3.15, all P<0.05). Radiogenomics analysis revealed a significant association of RSTIL with immunoregulatory pathways and immune checkpoint molecules (all P<0.05). Notably, BCG immunotherapy response rates were significantly higher in high-RSTIL patients than in low-RSTIL patients (P=0.007). CONCLUSION The Rad-TIL model, a noninvasive method for assessing TIL status, can predict clinical outcomes and BCG immunotherapy response in patients with bladder cancer.
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Affiliation(s)
- Ke Chen
- Department of Urology, Sun Yat-sen Memorial Hospital, Sun Yat-sen (Zhongshan) University
- Department of Urology, Shenzhen People's Hospital (The Second Clinical Medical College, Jinan University; The First Affiliated Hospital, Southern University of Science and Technology), Shenzhen, China
| | - Xiaoyang Li
- Department of Urology, The Third Affiliated Hospital of Sun Yat-sen University, Sun Yat-sen (Zhongshan) University, Guangzhou
| | - Libo Liu
- Department of Urology, Sun Yat-sen Memorial Hospital, Sun Yat-sen (Zhongshan) University
- Guangdong Provincial Key Laboratory of Malignant Tumour Epigenetics and Gene Regulation, Guangdong-Hong Kong Joint Laboratory for RNA Medicine, Medical Research Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen (Zhongshan) University, Guangzhou
| | - Bo Wang
- Department of Urology, Sun Yat-sen Memorial Hospital, Sun Yat-sen (Zhongshan) University
| | - Weiming Liang
- Department of Urology, The First Affiliated Hospital of Guangxi University of Science and Technology, Guangxi University of Science and Technology, Liuzhou, People’s Republic of China
| | - Junyu Chen
- Department of Urology, Sun Yat-sen Memorial Hospital, Sun Yat-sen (Zhongshan) University
- Guangdong Provincial Key Laboratory of Malignant Tumour Epigenetics and Gene Regulation, Guangdong-Hong Kong Joint Laboratory for RNA Medicine, Medical Research Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen (Zhongshan) University, Guangzhou
| | - Mingchao Gao
- Department of Urology, Sun Yat-sen Memorial Hospital, Sun Yat-sen (Zhongshan) University
| | - Xiaodong Huang
- Department of Urology, Sun Yat-sen Memorial Hospital, Sun Yat-sen (Zhongshan) University
| | - Bohao Liu
- Department of Urology, The Third Affiliated Hospital of Sun Yat-sen University, Sun Yat-sen (Zhongshan) University, Guangzhou
| | - Xi Sun
- Department of Urology, Sun Yat-sen Memorial Hospital, Sun Yat-sen (Zhongshan) University
| | - Tenghao Yang
- Department of Urology, Sun Yat-sen Memorial Hospital, Sun Yat-sen (Zhongshan) University
| | - Xiao Zhao
- Department of Urology, The Third Affiliated Hospital of Sun Yat-sen University, Sun Yat-sen (Zhongshan) University, Guangzhou
| | - Wang He
- Department of Urology, Sun Yat-sen Memorial Hospital, Sun Yat-sen (Zhongshan) University
| | - Yun Luo
- Department of Urology, The Third Affiliated Hospital of Sun Yat-sen University, Sun Yat-sen (Zhongshan) University, Guangzhou
| | - Jian Huang
- Department of Urology, Sun Yat-sen Memorial Hospital, Sun Yat-sen (Zhongshan) University
- Guangdong Provincial Key Laboratory of Malignant Tumour Epigenetics and Gene Regulation, Guangdong-Hong Kong Joint Laboratory for RNA Medicine, Medical Research Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen (Zhongshan) University, Guangzhou
| | - Tianxin Lin
- Department of Urology, Sun Yat-sen Memorial Hospital, Sun Yat-sen (Zhongshan) University
- Guangdong Provincial Key Laboratory of Malignant Tumour Epigenetics and Gene Regulation, Guangdong-Hong Kong Joint Laboratory for RNA Medicine, Medical Research Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen (Zhongshan) University, Guangzhou
| | - Wenlong Zhong
- Department of Urology, Sun Yat-sen Memorial Hospital, Sun Yat-sen (Zhongshan) University
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Moussa T, Assi T, Kasraoui I, Ammari S, Balleyguier C. Artificial intelligence and radiomics in desmoid-type fibromatosis: are we there yet? Future Oncol 2025; 21:1-3. [PMID: 39589757 PMCID: PMC11760224 DOI: 10.1080/14796694.2024.2418796] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2024] [Accepted: 10/16/2024] [Indexed: 11/27/2024] Open
Affiliation(s)
- Tania Moussa
- Division of Radiology, Gustave Roussy Cancer Campus, Villejuif, France
| | - Tarek Assi
- Division of International Patients Care, Gustave Roussy Cancer Campus, Villejuif, France
| | - Ines Kasraoui
- Division of Radiology, Gustave Roussy Cancer Campus, Villejuif, France
| | - Samy Ammari
- Division of Radiology, Gustave Roussy Cancer Campus, Villejuif, France
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Lecointre L, Alekseenko J, Pavone M, Karargyris A, Fanfani F, Fagotti A, Scambia G, Querleu D, Akladios C, Dana J, Padoy N. Artificial intelligence-enhanced magnetic resonance imaging-based pre-operative staging in patients with endometrial cancer. Int J Gynecol Cancer 2025; 35:100017. [PMID: 39878275 DOI: 10.1016/j.ijgc.2024.100017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2024] [Accepted: 11/17/2024] [Indexed: 01/31/2025] Open
Abstract
OBJECTIVE Evaluation of prognostic factors is crucial in patients with endometrial cancer for optimal treatment planning and prognosis assessment. This study proposes a deep learning pipeline for tumor and uterus segmentation from magnetic resonance imaging (MRI) images to predict deep myometrial invasion and cervical stroma invasion and thus assist clinicians in pre-operative workups. METHODS Two experts consensually reviewed the MRIs and assessed myometrial invasion and cervical stromal invasion as per the International Federation of Gynecology and Obstetrics staging classification, to compare the diagnostic performance of the model with the radiologic consensus. The deep learning method was trained using sagittal T2-weighted images from 142 patients and tested with a 3-fold stratified test with 36 patients in each fold. Our solution is based on a segmentation module, which employed a 2-stage pipeline for efficient uterus in the whole MRI volume and then tumor segmentation in the uterus predicted region of interest. RESULTS A total of 178 patients were included. For deep myometrial invasion prediction, the model achieved an average balanced test accuracy over 3-folds of 0.702, while experts reached an average accuracy of 0.769. For cervical stroma invasion prediction, our model demonstrated an average balanced accuracy of 0.721 on the 3-fold test set, while experts achieved an average balanced accuracy of 0.859. Additionally, the accuracy rates for uterus and tumor segmentation, measured by the Dice score, were 0.847 and 0.579 respectively. CONCLUSION Despite the current challenges posed by variations in data, class imbalance, and the presence of artifacts, our fully automatic approach holds great promise in supporting in pre-operative staging. Moreover, it demonstrated a robust capability to segment key regions of interest, specifically the uterus and tumors, highlighting the positive impact our solution can bring to health care imaging.
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Affiliation(s)
- Lise Lecointre
- Institute of Image-Guided Surgery, IHU Strasbourg, France; University Hospitals of Strasbourg, Department of Gynecologic Surgery, Strasbourg, France; University of Strasbourg, ICube, Laboratory of Engineering, Computer Science and Imaging, Department of Robotics, Imaging, Teledetection and Healthcare Technologies, CNRS, UMR, Strasbourg, France
| | - Julia Alekseenko
- Institute of Image-Guided Surgery, IHU Strasbourg, France; University of Strasbourg, ICube, Laboratory of Engineering, Computer Science and Imaging, Department of Robotics, Imaging, Teledetection and Healthcare Technologies, CNRS, UMR, Strasbourg, France
| | - Matteo Pavone
- Institute of Image-Guided Surgery, IHU Strasbourg, France; University of Strasbourg, ICube, Laboratory of Engineering, Computer Science and Imaging, Department of Robotics, Imaging, Teledetection and Healthcare Technologies, CNRS, UMR, Strasbourg, France; Research Institute against Digestive Cancer, IRCAD Strasbourg, France; UOC Ginecologia Oncologica, Dipartimento di Scienze per la salute della Donna e del Bambino e di Sanità Pubblica, Fondazione Policlinico Universitario A. Gemelli, IRCCS, Rome, Italy.
| | | | - Francesco Fanfani
- UOC Ginecologia Oncologica, Dipartimento di Scienze per la salute della Donna e del Bambino e di Sanità Pubblica, Fondazione Policlinico Universitario A. Gemelli, IRCCS, Rome, Italy; Università Cattolica del Sacro Cuore, Rome, Italy
| | - Anna Fagotti
- UOC Ginecologia Oncologica, Dipartimento di Scienze per la salute della Donna e del Bambino e di Sanità Pubblica, Fondazione Policlinico Universitario A. Gemelli, IRCCS, Rome, Italy; Università Cattolica del Sacro Cuore, Rome, Italy
| | - Giovanni Scambia
- UOC Ginecologia Oncologica, Dipartimento di Scienze per la salute della Donna e del Bambino e di Sanità Pubblica, Fondazione Policlinico Universitario A. Gemelli, IRCCS, Rome, Italy; Università Cattolica del Sacro Cuore, Rome, Italy
| | - Denis Querleu
- UOC Ginecologia Oncologica, Dipartimento di Scienze per la salute della Donna e del Bambino e di Sanità Pubblica, Fondazione Policlinico Universitario A. Gemelli, IRCCS, Rome, Italy; Università Cattolica del Sacro Cuore, Rome, Italy
| | - Cherif Akladios
- University Hospitals of Strasbourg, Department of Gynecologic Surgery, Strasbourg, France
| | - Jérémy Dana
- Institute of Image-Guided Surgery, IHU Strasbourg, France; Université de Strasbourg, Inserm U1110, Institut de Recherche sur les Maladies Virales et Hépatiques, Strasbourg, France; McGill University, Department of Diagnostic Radiology, Montreal, Canada; McGill University Health Centre Research Institute, Augmented Intelligence & Precision Health Laboratory, Montreal, Canada
| | - Nicolas Padoy
- Institute of Image-Guided Surgery, IHU Strasbourg, France; University of Strasbourg, ICube, Laboratory of Engineering, Computer Science and Imaging, Department of Robotics, Imaging, Teledetection and Healthcare Technologies, CNRS, UMR, Strasbourg, France
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Kwan ASH, Uwishema O, Mshaymesh S, Choudhary K, Salem FK, Sengar AS, Patel RP, Kazan Z, Wellington J. Advances in the diagnosis of colorectal cancer: the application of molecular biomarkers and imaging techniques: a literature review. Ann Med Surg (Lond) 2025; 87:192-203. [PMID: 40109625 PMCID: PMC11918703 DOI: 10.1097/ms9.0000000000002830] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2024] [Accepted: 11/22/2024] [Indexed: 03/22/2025] Open
Abstract
Background Following neoplasms of the lung and breast, colorectal cancer (CRC) is the third most frequent malignancy globally. Screening for CRC at the age of 50 years is strongly encouraged for prompt earlier diagnosis owing to prognoses being greatly correlated with time of detection and cancer staging. Aim This review aimed to elucidate the most recent advancements in the detection of CRC, with an emphasis on the latest innovations in diagnostic molecular biomarkers in conjunction with radiological imaging alongside stool-based tests for CRC screening. Methods A comprehensive review of the literature was performed, focusing on specific terms in different electronic databases, including that of PubMed/MEDLINE. Keywords pertaining to "colorectal cancer," "diagnosis," "screening," "imaging," and "biomarkers," among others, were employed in the search strategy. Articles screened and evaluated were deemed relevant to the study aim and were presented in the medium of the English language. Results There have been several innovations in the diagnostics and identification of CRC. These generally comprise molecular biomarkers, currently being studied for suitability in disease detection. Examples of these include genetic, epigenetic, and protein biomarkers. Concurrently, recent developments in CRC diagnostics highlight the advancements made in radiological imaging that offer precise insights on tumor biology in addition to morphological information. Combining these with statistical methodologies will increase the sensitivity and specificity of CRC diagnostics. However, putting these strategies into reality is hampered by several issues. Conclusion Progress in diagnostic technology alongside the identification of a few prognostic predictive molecular biomarkers suggested great promise for prompt detection and management of CRC. This clearly necessitates further efforts to learn more in this specific sector.
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Affiliation(s)
- Alicia Su Huey Kwan
- Department of Research and Education, Oli Health Magazine Organization, Research and Education, Kigali, Rwanda
- Department of Medicine for Older People, Southampton General Hospital, Southampton, United Kingdom
| | - Olivier Uwishema
- Department of Research and Education, Oli Health Magazine Organization, Research and Education, Kigali, Rwanda
| | - Sarah Mshaymesh
- Department of Research and Education, Oli Health Magazine Organization, Research and Education, Kigali, Rwanda
- Department of Natural Sciences, Faculty of Sciences, Haigazian University, Beirut, Lebanon
| | - Karan Choudhary
- Department of Research and Education, Oli Health Magazine Organization, Research and Education, Kigali, Rwanda
- Medical School, Department of General Medicine, MGM Medical College, Aurangabad, India
| | - Fatma K Salem
- Department of Research and Education, Oli Health Magazine Organization, Research and Education, Kigali, Rwanda
- Biochemistry Department, Faculty of Veterinary Medicine, South Valley University, Qena, Egypt
| | - Aman Singh Sengar
- Department of Research and Education, Oli Health Magazine Organization, Research and Education, Kigali, Rwanda
- Medical School, Department of General Medicine, Yerevan State Medical University after Mkhitar Heratsi, Yerevan, Armenia
| | - Raj Pravin Patel
- Department of Research and Education, Oli Health Magazine Organization, Research and Education, Kigali, Rwanda
- Department of General Surgery, Manohar Waman Desai General Hospital, Mumbai, India
| | - Zeinab Kazan
- Department of Research and Education, Oli Health Magazine Organization, Research and Education, Kigali, Rwanda
- Faculty of Medical Sciences, Lebanese University, Beirut, Lebanon
| | - Jack Wellington
- Department of Research and Education, Oli Health Magazine Organization, Research and Education, Kigali, Rwanda
- Department of Neurosurgery, Leeds Teaching Hospitals NHS Foundation Trust, Leeds, United Kingdom
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Cao X, Xiong M, Liu Z, Yang J, Kan YB, Zhang LQ, Liu YH, Xie MG, Hu XF. Update report on the quality of gliomas radiomics: An integration of bibliometric and radiomics quality score. World J Radiol 2024; 16:794-805. [PMID: 39801663 PMCID: PMC11718527 DOI: 10.4329/wjr.v16.i12.794] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/12/2024] [Revised: 11/04/2024] [Accepted: 11/25/2024] [Indexed: 12/27/2024] Open
Abstract
BACKGROUND Despite the increasing number of publications on glioma radiomics, challenges persist in clinical translation. AIM To assess the development and reporting quality of radiomics in brain gliomas since 2019. METHODS A bibliometric analysis was conducted to reveal trends in brain glioma radiomics research. The Radiomics Quality Score (RQS), a metric for evaluating the quality of radiomics studies, was applied to assess the quality of adult-type diffuse glioma studies published since 2019. The total RQS score and the basic adherence rate for each item were calculated. Subgroup analysis by journal type and research objective was performed, correlating the total RQS score with journal impact factors. RESULTS The radiomics research in glioma was initiated in 2011 and has witnessed a surge since 2019. Among the 260 original studies, the median RQS score was 11, correlating with a basic compliance rate of 46.8%. Subgroup analysis revealed significant differences in domain 1 and its subitems (multiple segmentations) across journal types (P = 0.039 and P = 0.03, respectively). The Spearman correlation coefficients indicated that the total RQS score had a negative correlation with the Journal Citation Report category (-0.69) and a positive correlation with the five-year impact factors (0.318) of journals. CONCLUSION Glioma radiomics research quality has improved since 2019 but necessitates further advancement with higher publication standards.
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Affiliation(s)
- Xu Cao
- Department of Radiology, The People's Hospital of Shifang, Deyang 618400, Sichuan Province, China
- Department of Nuclear Medicine, Southwest Hospital, Third Military Medical University (Army Medical University), Chongqing 400038, Chongqing, China
| | - Ming Xiong
- Department of Digital Medicine, School of Biomedical Engineering and Medical Imaging, Third Military Medical University (Army Medical University), Chongqing 400038, China
| | - Zhi Liu
- Department of Radiology, Chongqing Hospital of Traditional Chinese Medicine, Chongqing 400000, China
| | - Jing Yang
- Department of Radiology, Southwest Hospital, Third Military Medical University (Army Medical University), Chongqing 400038, China
| | - Yu-Bo Kan
- School of Medical and Life Sciences, Chengdu University of Traditional Chinese Medicine, Chengdu 610075, Sichuan Province, China
| | - Li-Qiang Zhang
- Department of Radiology, The First Affiliated Hospital of Chongqing Medical University, Chongqing 400010, China
| | - Yan-Hui Liu
- Department of Neurosurgery, West China Hospital, Sichuan University, Chengdu 610041, Sichuan Province, China
| | - Ming-Guo Xie
- Department of Radiology, Hospital of Chengdu University of Traditional Chinese Medicine, Chengdu 500643, Sichuan Province, China
| | - Xiao-Fei Hu
- Department of Nuclear Medicine, Southwest Hospital, Third Military Medical University (Army Medical University), Chongqing 400038, Chongqing, China
- Glioma Medicine Research Center, Southwest Hospital, Third Military Medical University (Army Medical University), Chongqing 400038, Chongqing, China
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Ali MA, Zahra OS, Morsi MI, El Safwany MM, El Feky SE. Predictive role of [ 18F]FDG PET-CT radiomic parameters for KRAS/BRAF/EGFR mutations in metastatic colorectal cancer patients. EJNMMI REPORTS 2024; 8:42. [PMID: 39722096 DOI: 10.1186/s41824-024-00233-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2024] [Accepted: 12/05/2024] [Indexed: 12/28/2024]
Abstract
OBJECTIVES The objective of this study was to evaluate the predictive value of 18F-fluorodeoxyglucose [18F]FDG positron emission tomography (PET-CT) radiomic parameters in relation to KRAS/BRAF/EGFR mutations in patients with metastatic colorectal cancer (mCRC). METHODS Blood samples were collected from 90 mCRC patients to assess KRAS G13V, BRAF V600E, and EGFR exon 20 mutations. [18F]FDG PET-CT scans were performed, and radiomic parameters, including the SUV max, max TBR, total MTV, and total TLG, were calculated and correlated with different genotypes and haplotypes of the aforementioned mutations. RESULTS The SUV max, TLG, and TBR were significantly greater in patients with the KRAS G13V and BRAF V600E mutations than in patients with the wild-type genotype. The SUVmax was also significantly greater in patients with EGFR exon 20 mutations. Haplotype analysis revealed that the SUVmax was significantly greater in patients with KRAS/BRAF/EGFR mutations than in other patients, with a specificity of 68.18% and sensitivity of 65.28%. CONCLUSION The results suggest that [18F] FDG PET-CT radiomic parameters, particularly the SUV max, have the potential to serve as noninvasive tools for predicting the KRAS/BRAF/EGFR mutation status in mCRC patients.
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Affiliation(s)
- Magdi A Ali
- Faculty of Health Sciences, Gulf Medical University, Ajman, United Arab Emirates.
- Radiation Sciences Department, Medical Research Institute, University of Alexandria, Alexandria, Egypt.
| | - Omar Shebl Zahra
- Clinical Oncology and Nuclear Medicine Department, Faculty of Medicine, University of Alexandria, Alexandria, Egypt
| | - Mohmed I Morsi
- Radiation Sciences Department, Medical Research Institute, University of Alexandria, Alexandria, Egypt
| | - Mohamed M El Safwany
- Radiology and Medical Imaging Department, Faculty of Applied Health Sciences Technology, Pharos University, Alexandria, Egypt
| | - Shaymaa Essam El Feky
- Radiation Sciences Department, Medical Research Institute, University of Alexandria, Alexandria, Egypt
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Wang Y, Zhang J, Li Q, Sun L, Zheng Y, Gao C, Dong C. An MRI-based radiomics nomogram for preoperative prediction of Ki-67 index in nasopharyngeal carcinoma: a two-center study. Front Oncol 2024; 14:1423304. [PMID: 39759139 PMCID: PMC11695239 DOI: 10.3389/fonc.2024.1423304] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2024] [Accepted: 11/27/2024] [Indexed: 01/07/2025] Open
Abstract
Background The expression level of Ki-67 in nasopharyngeal carcinoma (NPC) affects the prognosis and treatment options of patients. Our study developed and validated an MRI-based radiomics nomogram for preoperative evaluation of Ki-67 expression levels in nasopharyngeal carcinoma (NPC). Methods In all, 133 patients with pathologically-confirmed (post-operatively) NPC who underwent MRI examination in one of two medical centers. Data from one medical center (n=105; Ki-67: ≥50% [n=57], <50% [n=48]) formed the training set, while data from another medical center (n=28; Ki-67: ≥50% [n=15], <50% [n=13]) formed the test set. Clinical data and routine MRI results were reviewed to determine significant predictive factors. The minimum absolute shrinkage and selection operator method was used to select key radiomics features to form a radiomics signatures from resonance imaging (MRI), and a radiomics score (Rad-score) was calculated. Subsequently, a radiomics nomogram was established using a logistic regression (LR) algorithm. The predictive performance of the nomogram was evaluated using operating characteristics curve (ROC), decision curve analysis (DCA), and the area under the curve (AUC). Results Five radiomics features were selected to build the radiomics signature. The radiomics nomogram incorporating the clinical factors and radiomics signature showed favorable predictive value for expression level of Ki-67, with AUC 0.841 (95% confidence intervals: 0.654 -0.951) for the test set. Decision curve analysis showed that the nomogram outperformed a clinical model in terms of clinical usefulness. Conclusions The radiomics nomogram based on MRI effectively predicted the pre-surgical expression level of Ki-67.
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Affiliation(s)
- Yao Wang
- Department of Radiology, Affiliated Hospital of Qingdao University, Qingdao, China
| | - Jing Zhang
- Department of Radiology, Affiliated Hospital of Qingdao University, Qingdao, China
| | - Qiyuan Li
- Department of Radiology, Affiliated Hospital of Qingdao University, Qingdao, China
| | - Li Sun
- Department of Radiology, Affiliated Hospital of Qingdao University, Qingdao, China
| | - Yingmei Zheng
- The Affiliated Hospital of Qingdao University, Qingdao, Shandong, China
| | - Chuanping Gao
- Department of Radiology, Affiliated Hospital of Qingdao University, Qingdao, China
| | - Cheng Dong
- Department of Radiology, Affiliated Hospital of Qingdao University, Qingdao, China
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Chen X, Huang Y, Wee L, Zhao K, Mao Y, Li Z, Yao S, Li S, Liang Y, Huang X, Dekker A, Chen X, Liu Z. Integrated analysis of radiomics, RNA, and clinicopathologic phenotype reveals biological basis of prognostic risk stratification in colorectal cancer. Sci Bull (Beijing) 2024; 69:3666-3671. [PMID: 39438165 DOI: 10.1016/j.scib.2024.10.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2023] [Revised: 04/28/2024] [Accepted: 08/24/2024] [Indexed: 10/25/2024]
Affiliation(s)
- Xiaobo Chen
- Department of Radiology, Guangdong Provincial People's Hospital (Guangdong Academy of Medical Sciences), Southern Medical University, Guangzhou 510080, China; Guangdong Provincial Key Laboratory of Artificial Intelligence in Medical Image Analysis and Application, Guangzhou 510080, China
| | - Yanqi Huang
- Department of Radiology, Guangdong Provincial People's Hospital (Guangdong Academy of Medical Sciences), Southern Medical University, Guangzhou 510080, China; Guangdong Provincial Key Laboratory of Artificial Intelligence in Medical Image Analysis and Application, Guangzhou 510080, China; Department of Radiation Oncology (Maastro), GROW Research Institute for Oncology and Reproduction, Maastricht University Medical Centre+, Maastricht 6229 ER, the Netherlands
| | - Leonard Wee
- Department of Radiation Oncology (Maastro), GROW Research Institute for Oncology and Reproduction, Maastricht University Medical Centre+, Maastricht 6229 ER, the Netherlands
| | - Ke Zhao
- Department of Radiology, Guangdong Provincial People's Hospital (Guangdong Academy of Medical Sciences), Southern Medical University, Guangzhou 510080, China; Guangdong Provincial Key Laboratory of Artificial Intelligence in Medical Image Analysis and Application, Guangzhou 510080, China
| | - Yun Mao
- Department of Radiology, the First Affiliated Hospital of Chongqing Medical University, Chongqing 400016, China
| | - Zhenhui Li
- Department of Radiology, The Third Affiliated Hospital of Kunming Medical University, Yunnan Cancer Hospital, Kunming 650106, China
| | - Su Yao
- Department of Pathology, Guangdong Provincial People's Hospital (Guangdong Academy of Medical Sciences), Southern Medical University, Guangzhou 510080, China
| | - Suyun Li
- Department of Radiology, Guangdong Provincial People's Hospital (Guangdong Academy of Medical Sciences), Southern Medical University, Guangzhou 510080, China; Guangdong Provincial Key Laboratory of Artificial Intelligence in Medical Image Analysis and Application, Guangzhou 510080, China
| | - Yanting Liang
- Department of Radiology, Guangdong Provincial People's Hospital (Guangdong Academy of Medical Sciences), Southern Medical University, Guangzhou 510080, China; Guangdong Provincial Key Laboratory of Artificial Intelligence in Medical Image Analysis and Application, Guangzhou 510080, China
| | - Xin Huang
- Department of Radiology, Guangdong Provincial People's Hospital (Guangdong Academy of Medical Sciences), Southern Medical University, Guangzhou 510080, China; Guangdong Provincial Key Laboratory of Artificial Intelligence in Medical Image Analysis and Application, Guangzhou 510080, China
| | - Andre Dekker
- Department of Radiation Oncology (Maastro), GROW Research Institute for Oncology and Reproduction, Maastricht University Medical Centre+, Maastricht 6229 ER, the Netherlands
| | - Xin Chen
- Department of Radiology, Guangzhou First People's Hospital, School of Medicine, South China University of Technology, Guangzhou 510180, China.
| | - Zaiyi Liu
- Department of Radiology, Guangdong Provincial People's Hospital (Guangdong Academy of Medical Sciences), Southern Medical University, Guangzhou 510080, China; Guangdong Provincial Key Laboratory of Artificial Intelligence in Medical Image Analysis and Application, Guangzhou 510080, China.
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Vitale F, Zileri Dal Verme L, Paratore M, Negri M, Nista EC, Ainora ME, Esposto G, Mignini I, Borriello R, Galasso L, Alfieri S, Gasbarrini A, Zocco MA, Nicoletti A. The Past, Present, and Future of Biomarkers for the Early Diagnosis of Pancreatic Cancer. Biomedicines 2024; 12:2840. [PMID: 39767746 PMCID: PMC11673965 DOI: 10.3390/biomedicines12122840] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2024] [Revised: 11/30/2024] [Accepted: 12/11/2024] [Indexed: 01/04/2025] Open
Abstract
Pancreatic cancer is one of the most aggressive cancers with a very poor 5-year survival rate and reduced therapeutic options when diagnosed in an advanced stage. The dismal prognosis of pancreatic cancer has guided significant efforts to discover novel biomarkers in order to anticipate diagnosis, increasing the population of patients who can benefit from curative surgical treatment. CA 19-9 is the reference biomarker that supports the diagnosis and guides the response to treatments. However, it has significant limitations, a low specificity, and is inefficient as a screening tool. Several potential biomarkers have been discovered in the serum, urine, feces, and pancreatic juice of patients. However, most of this evidence needs further validation in larger cohorts. The advent of advanced omics sciences and liquid biopsy techniques has further enhanced this field of research. The aim of this review is to analyze the historical evolution of the research on novel biomarkers for the early diagnosis of pancreatic cancer, focusing on the current evidence for the most promising biomarkers from different body fluids and the novel trends in research, such as omics sciences and liquid biopsy, in order to favor the application of modern personalized medicine.
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Affiliation(s)
- Federica Vitale
- CEMAD Centro Malattie dell’Apparato Digerente, Medicina Interna e Gastroenterologia, Dipartimento di Medicina e Chirurgia Traslazionale, Università Cattolica del Sacro Cuore, Fondazione Policlinico Universitario “A. Gemelli” IRCCS, 00168 Rome, Italy; (F.V.); (L.Z.D.V.); (M.P.); (M.N.); (E.C.N.); (M.E.A.); (G.E.); (I.M.); (R.B.); (L.G.); (A.G.); (A.N.)
| | - Lorenzo Zileri Dal Verme
- CEMAD Centro Malattie dell’Apparato Digerente, Medicina Interna e Gastroenterologia, Dipartimento di Medicina e Chirurgia Traslazionale, Università Cattolica del Sacro Cuore, Fondazione Policlinico Universitario “A. Gemelli” IRCCS, 00168 Rome, Italy; (F.V.); (L.Z.D.V.); (M.P.); (M.N.); (E.C.N.); (M.E.A.); (G.E.); (I.M.); (R.B.); (L.G.); (A.G.); (A.N.)
| | - Mattia Paratore
- CEMAD Centro Malattie dell’Apparato Digerente, Medicina Interna e Gastroenterologia, Dipartimento di Medicina e Chirurgia Traslazionale, Università Cattolica del Sacro Cuore, Fondazione Policlinico Universitario “A. Gemelli” IRCCS, 00168 Rome, Italy; (F.V.); (L.Z.D.V.); (M.P.); (M.N.); (E.C.N.); (M.E.A.); (G.E.); (I.M.); (R.B.); (L.G.); (A.G.); (A.N.)
| | - Marcantonio Negri
- CEMAD Centro Malattie dell’Apparato Digerente, Medicina Interna e Gastroenterologia, Dipartimento di Medicina e Chirurgia Traslazionale, Università Cattolica del Sacro Cuore, Fondazione Policlinico Universitario “A. Gemelli” IRCCS, 00168 Rome, Italy; (F.V.); (L.Z.D.V.); (M.P.); (M.N.); (E.C.N.); (M.E.A.); (G.E.); (I.M.); (R.B.); (L.G.); (A.G.); (A.N.)
| | - Enrico Celestino Nista
- CEMAD Centro Malattie dell’Apparato Digerente, Medicina Interna e Gastroenterologia, Dipartimento di Medicina e Chirurgia Traslazionale, Università Cattolica del Sacro Cuore, Fondazione Policlinico Universitario “A. Gemelli” IRCCS, 00168 Rome, Italy; (F.V.); (L.Z.D.V.); (M.P.); (M.N.); (E.C.N.); (M.E.A.); (G.E.); (I.M.); (R.B.); (L.G.); (A.G.); (A.N.)
| | - Maria Elena Ainora
- CEMAD Centro Malattie dell’Apparato Digerente, Medicina Interna e Gastroenterologia, Dipartimento di Medicina e Chirurgia Traslazionale, Università Cattolica del Sacro Cuore, Fondazione Policlinico Universitario “A. Gemelli” IRCCS, 00168 Rome, Italy; (F.V.); (L.Z.D.V.); (M.P.); (M.N.); (E.C.N.); (M.E.A.); (G.E.); (I.M.); (R.B.); (L.G.); (A.G.); (A.N.)
| | - Giorgio Esposto
- CEMAD Centro Malattie dell’Apparato Digerente, Medicina Interna e Gastroenterologia, Dipartimento di Medicina e Chirurgia Traslazionale, Università Cattolica del Sacro Cuore, Fondazione Policlinico Universitario “A. Gemelli” IRCCS, 00168 Rome, Italy; (F.V.); (L.Z.D.V.); (M.P.); (M.N.); (E.C.N.); (M.E.A.); (G.E.); (I.M.); (R.B.); (L.G.); (A.G.); (A.N.)
| | - Irene Mignini
- CEMAD Centro Malattie dell’Apparato Digerente, Medicina Interna e Gastroenterologia, Dipartimento di Medicina e Chirurgia Traslazionale, Università Cattolica del Sacro Cuore, Fondazione Policlinico Universitario “A. Gemelli” IRCCS, 00168 Rome, Italy; (F.V.); (L.Z.D.V.); (M.P.); (M.N.); (E.C.N.); (M.E.A.); (G.E.); (I.M.); (R.B.); (L.G.); (A.G.); (A.N.)
| | - Raffaele Borriello
- CEMAD Centro Malattie dell’Apparato Digerente, Medicina Interna e Gastroenterologia, Dipartimento di Medicina e Chirurgia Traslazionale, Università Cattolica del Sacro Cuore, Fondazione Policlinico Universitario “A. Gemelli” IRCCS, 00168 Rome, Italy; (F.V.); (L.Z.D.V.); (M.P.); (M.N.); (E.C.N.); (M.E.A.); (G.E.); (I.M.); (R.B.); (L.G.); (A.G.); (A.N.)
| | - Linda Galasso
- CEMAD Centro Malattie dell’Apparato Digerente, Medicina Interna e Gastroenterologia, Dipartimento di Medicina e Chirurgia Traslazionale, Università Cattolica del Sacro Cuore, Fondazione Policlinico Universitario “A. Gemelli” IRCCS, 00168 Rome, Italy; (F.V.); (L.Z.D.V.); (M.P.); (M.N.); (E.C.N.); (M.E.A.); (G.E.); (I.M.); (R.B.); (L.G.); (A.G.); (A.N.)
| | - Sergio Alfieri
- Centro Pancreas, Chirurgia Digestiva, Dipartimento di Medicina e Chirurgia Traslazionale, Università Cattolica del Sacro Cuore, Fondazione Policlinico Universitario “A. Gemelli” IRCCS, 00168 Rome, Italy;
| | - Antonio Gasbarrini
- CEMAD Centro Malattie dell’Apparato Digerente, Medicina Interna e Gastroenterologia, Dipartimento di Medicina e Chirurgia Traslazionale, Università Cattolica del Sacro Cuore, Fondazione Policlinico Universitario “A. Gemelli” IRCCS, 00168 Rome, Italy; (F.V.); (L.Z.D.V.); (M.P.); (M.N.); (E.C.N.); (M.E.A.); (G.E.); (I.M.); (R.B.); (L.G.); (A.G.); (A.N.)
| | - Maria Assunta Zocco
- CEMAD Centro Malattie dell’Apparato Digerente, Medicina Interna e Gastroenterologia, Dipartimento di Medicina e Chirurgia Traslazionale, Università Cattolica del Sacro Cuore, Fondazione Policlinico Universitario “A. Gemelli” IRCCS, 00168 Rome, Italy; (F.V.); (L.Z.D.V.); (M.P.); (M.N.); (E.C.N.); (M.E.A.); (G.E.); (I.M.); (R.B.); (L.G.); (A.G.); (A.N.)
| | - Alberto Nicoletti
- CEMAD Centro Malattie dell’Apparato Digerente, Medicina Interna e Gastroenterologia, Dipartimento di Medicina e Chirurgia Traslazionale, Università Cattolica del Sacro Cuore, Fondazione Policlinico Universitario “A. Gemelli” IRCCS, 00168 Rome, Italy; (F.V.); (L.Z.D.V.); (M.P.); (M.N.); (E.C.N.); (M.E.A.); (G.E.); (I.M.); (R.B.); (L.G.); (A.G.); (A.N.)
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Jia XF, Chen YC, Zheng KK, Zhu DQ, Chen C, Liu J, Yang YJ, Li CT. Clinical-Radiomics Nomogram Model Based on CT Angiography for Prediction of Intracranial Aneurysm Rupture: A Multicenter Study. J Multidiscip Healthc 2024; 17:5917-5926. [PMID: 39678712 PMCID: PMC11645942 DOI: 10.2147/jmdh.s491697] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2024] [Accepted: 12/05/2024] [Indexed: 12/17/2024] Open
Abstract
Objective Risk estimation of intracranial aneurysm rupture is critical in determining treatment strategy. There is a scarcity of multicenter studies on the predictive power of clinical-radiomics models for aneurysm rupture. This study aims to develop a clinical-radiomics model and explore its additional value in the discrimination of aneurysm rupture. Methods A total of 516 aneurysms, including 273 (52.9%) with ruptured aneurysms, were retrospectively enrolled from four hospitals between January 2019 and August 2020. Relevant clinical features were collected, and radiomic characteristics associated with aneurysm were extracted. Subsequently, three models, including a clinical model, a radiomics model, and a clinical-radiomics model were constructed using multivariate logistic regression analysis to effectively classify aneurysm rupture. The performance of models was analyzed through operating characteristic curves, decision curve, and calibration curves analysis. Different models' comparison used DeLong tests. To offer an understandable and intuitive scoring system for assessing rupture risk, we developed a comprehensive nomogram based on the developed model. Results Three clinical risk factors and fourteen radiomics features were explored to establish three models. The area under the receiver operating curve (AUC) for the radiomics model was 0.775 (95% CI,0.719-0.830), 0.752 (95% CI,0.663-0.841), 0.747 (95% CI,0.658-0.835) in the training, internal and external test datasets, respectively. The AUC for clinical model was 0.802 (95% CI, 0.749-0.854), 0.736 (95% CI, 0.644-0.828), 0.789 (95% CI, 0.709-0.870) in these three sets, respectively. The clinical-radiomics model showed an AUC of 0.880 (95% CI,0.840-0.920), 0.807 (95% CI,0.728-0.887), 0.815 (95% CI,0.740-0.891) in three datasets respectively. Compared with the radiomics and clinical models, the clinical-radiomics model demonstrated better diagnostic performance (DeLong' test P < 0.05). Conclusion The clinical-radiomics model represents a promising approach for predicting rupture of intracranial aneurysms.
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Affiliation(s)
- Xiu-Fen Jia
- Department of Radiology, Shandong Provincial Hospital, Shandong University, Jinan, 250021, People’s Republic of China
- Department of Radiology, First Affiliated Hospital of Wenzhou Medical University, Wenzhou, 325000, People’s Republic of China
| | - Yong-Chun Chen
- Department of Radiology, First Affiliated Hospital of Wenzhou Medical University, Wenzhou, 325000, People’s Republic of China
| | - Kui-Kui Zheng
- Department of Radiology, First Affiliated Hospital of Wenzhou Medical University, Wenzhou, 325000, People’s Republic of China
| | - Dong-Qin Zhu
- Department of Radiology, First Affiliated Hospital of Wenzhou Medical University, Wenzhou, 325000, People’s Republic of China
| | - Chao Chen
- Department of Radiology, First Affiliated Hospital of Wenzhou Medical University, Wenzhou, 325000, People’s Republic of China
| | - Jinjin Liu
- Department of Radiology, First Affiliated Hospital of Wenzhou Medical University, Wenzhou, 325000, People’s Republic of China
| | - Yun-Jun Yang
- Department of Radiology, First Affiliated Hospital of Wenzhou Medical University, Wenzhou, 325000, People’s Republic of China
| | - Chuan-Ting Li
- Department of Radiology, Shandong Provincial Hospital, Shandong University, Jinan, 250021, People’s Republic of China
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Gu P, Mendonca O, Carter D, Dube S, Wang P, Huang X, Li D, Moore JH, McGovern DPB. AI-luminating Artificial Intelligence in Inflammatory Bowel Diseases: A Narrative Review on the Role of AI in Endoscopy, Histology, and Imaging for IBD. Inflamm Bowel Dis 2024; 30:2467-2485. [PMID: 38452040 DOI: 10.1093/ibd/izae030] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/17/2023] [Indexed: 03/09/2024]
Abstract
Endoscopy, histology, and cross-sectional imaging serve as fundamental pillars in the detection, monitoring, and prognostication of inflammatory bowel disease (IBD). However, interpretation of these studies often relies on subjective human judgment, which can lead to delays, intra- and interobserver variability, and potential diagnostic discrepancies. With the rising incidence of IBD globally coupled with the exponential digitization of these data, there is a growing demand for innovative approaches to streamline diagnosis and elevate clinical decision-making. In this context, artificial intelligence (AI) technologies emerge as a timely solution to address the evolving challenges in IBD. Early studies using deep learning and radiomics approaches for endoscopy, histology, and imaging in IBD have demonstrated promising results for using AI to detect, diagnose, characterize, phenotype, and prognosticate IBD. Nonetheless, the available literature has inherent limitations and knowledge gaps that need to be addressed before AI can transition into a mainstream clinical tool for IBD. To better understand the potential value of integrating AI in IBD, we review the available literature to summarize our current understanding and identify gaps in knowledge to inform future investigations.
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Affiliation(s)
- Phillip Gu
- F. Widjaja Inflammatory Bowel Disease Institute, Cedars-Sinai Medical Center, Los Angeles, CA, USA
| | | | - Dan Carter
- Department of Gastroenterology, Sheba Medical Center, Tel Aviv, Israel
| | - Shishir Dube
- F. Widjaja Inflammatory Bowel Disease Institute, Cedars-Sinai Medical Center, Los Angeles, CA, USA
| | - Paul Wang
- Department of Computational Biomedicine, Cedars-Sinai Medical Center, Los Angeles, CA, USA
| | - Xiuzhen Huang
- Department of Computational Biomedicine, Cedars-Sinai Medical Center, Los Angeles, CA, USA
| | - Debiao Li
- Biomedical Research Institute, Cedars-Sinai Medical Center, Los Angeles, CA, USA
| | - Jason H Moore
- Department of Computational Biomedicine, Cedars-Sinai Medical Center, Los Angeles, CA, USA
| | - Dermot P B McGovern
- F. Widjaja Inflammatory Bowel Disease Institute, Cedars-Sinai Medical Center, Los Angeles, CA, USA
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Yang Y, Yuan Z, Ren Q, Wang J, Guan S, Tang X, Jiang Q, Meng X. Machine Learning-Enabled Fuhrman Grade in Clear-cell Renal Carcinoma Prediction Using Two-dimensional Ultrasound Images. ULTRASOUND IN MEDICINE & BIOLOGY 2024; 50:1911-1918. [PMID: 39317624 DOI: 10.1016/j.ultrasmedbio.2024.08.019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2024] [Revised: 08/22/2024] [Accepted: 08/24/2024] [Indexed: 09/26/2024]
Abstract
OBJECTIVE Accurate assessment of Fuhrman grade is crucial for optimal clinical management and personalized treatment strategies in patients with clear cell renal cell carcinoma (CCRCC). In this study, we developed a predictive model using ultrasound (US) images to accurately predict the Fuhrman grade. METHODS Between March 2013 and July 2023, a retrospective analysis was conducted on the US imaging and clinical data of 235 patients with pathologically confirmed CCRCC, including 67 with Fuhrman grades Ⅲ and Ⅳ. This study included 201 patients from Hospital A who were divided into training set (n = 161) and an internal validation set (n = 40) in an 8:2 ratio. Additionally, 34 patients from Hospital B were included for external validation. US images were delineated using ITK software, and radiomics features were extracted using PyRadiomics software. Subsequently, separate models for clinical factors, radiomics features, and their combinations were constructed. The model's performance was assessed by calculating the area under the receiver operating characteristic curve (AUC), calibration curve and decision curve analysis (DCA). RESULTS In total, 235 patients diagnosed with CCRCC, comprising 168 low-grade and 67 high-grade tumors, were included in this study. A comparison of the predictive performances of different models revealed that the logistic regression model exhibited relatively good stability and robustness. The AUC of the combined model for the training, internal validation and external validation sets were 0.871, 0.785 and 0.826, respectively, which were higher than those of the clinical and imaging histology models. Furthermore, the calibration curve demonstrated excellent concordance between the predicted Fuhrman grade probability of CCRCC using the combined model and the observed values in both the training and validation sets. Additionally, within the threshold range of 0-0.93, the combined model demonstrated substantial clinical utility, as evidenced by DCA. CONCLUSION The application of US radiomics techniques enabled objective prediction of Fuhrman grading in patients with CCRCC. Nevertheless, certain clinical indicators remain indispensable, underscoring the pressing need for their integrated use in clinical practice. ADVANCES IN KNOWLEDGE Previous studies have predominantly focused on using computed tomography or magnetic resonance imaging modalities to predict the Fuhrman grade of CCRCC. Our findings demonstrate that a prediction model based on US images is more cost-effective, easily accessible and exhibits commendable performance. Consequently, this study offers a promising approach to maximizing the use of US examinations in future research.
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Affiliation(s)
- Youchang Yang
- Department of Radiology, Qingdao Medical and Industrial Cross Key Laboratory, Qilu Hospital (Qingdao), Cheeloo College of Medicine, Shandong University, Qingdao, Shandong, China
| | - Ziyi Yuan
- School of Medicine, Cheeloo College of Medicine, Shandong University, Jinan, China
| | - Qingguo Ren
- Department of Radiology, Qingdao Medical and Industrial Cross Key Laboratory, Qilu Hospital (Qingdao), Cheeloo College of Medicine, Shandong University, Qingdao, Shandong, China
| | - Jiajia Wang
- School of Medicine, Cheeloo College of Medicine, Shandong University, Jinan, China
| | - Shuai Guan
- Department of Radiology, Qingdao Medical and Industrial Cross Key Laboratory, Qilu Hospital (Qingdao), Cheeloo College of Medicine, Shandong University, Qingdao, Shandong, China
| | - Xiaoqiang Tang
- Department of Radiology, The Affiliated Changzhou No. 2 People's Hospital of Nanjing Medical University, Changzhou, China
| | - Qingjun Jiang
- Department of Radiology, Qingdao Medical and Industrial Cross Key Laboratory, Qilu Hospital (Qingdao), Cheeloo College of Medicine, Shandong University, Qingdao, Shandong, China
| | - Xiangshui Meng
- Department of Radiology, Qingdao Medical and Industrial Cross Key Laboratory, Qilu Hospital (Qingdao), Cheeloo College of Medicine, Shandong University, Qingdao, Shandong, China.
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Wang Y, Guan F, Wang S, Jian W, Khan M. Radiation induced liver injury (RILI) evaluation using longitudinal computed tomography (CT) in image-guided precision murine radiotherapy. PRECISION RADIATION ONCOLOGY 2024; 8:182-190. [PMID: 40337459 PMCID: PMC11934901 DOI: 10.1002/pro6.1244] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2024] [Revised: 10/02/2024] [Accepted: 10/07/2024] [Indexed: 05/09/2025] Open
Abstract
Purpose We aim to perform image-guided, dose-escalated, well-controlled liver-irradiated animal studies and subsequently evaluate radiation induced liver injury (RILI) using longitudinal CT. Methods Eighteen 6-8 weeks mice were divided into three groups: control, 15Gy and 30Gy irradiated groups. The animal protocol was approved by the animal care ethics committee of our institution. Precision radiotherapy started with CT simulation, followed by treatment planning using volumetric modulated arc therapy (VMAT), image guidance with cone beam CT (CBCT) and radiation delivery on a medical linear accelerator. Weekly CT was conducted on the same CT simulator using same scanning parameters. At the end of fifth week, all mice were sacrificed, and histological staining was performed. Body weight, liver volume, HU values and histogram distributions were analyzed. Results Body weight of irradiation groups was significantly reduced compared to that of the control group (p<0.05). Liver volume in irradiated groups was reduced too. The average liver HU was significantly reduced in irradiated groups (HU mean = 62±3, 48±6, and 36±8 for the control, 15Gy and 30Gy respectively; p control vs. 15Gy < 0.05, p control vs. 30Gy < 0.05). A linear relationship between liver HU and radiation dose was found. Furthermore, HU histogram changes with time and dose showed not only density but also structure might be affected by radiation. HE and Masson Trichrome staining confirmed histological change and increased collagen deposition in irradiated liver. Conclusion Longitudinal unenhanced CT is a useful imaging tool to evaluate the severity and progression of radiation induced liver injury.
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Affiliation(s)
- Yuenan Wang
- Department of Therapeutic RadiologyYale University School of MedicineNew HavenConnecticutUSA
| | - Fada Guan
- Department of Therapeutic RadiologyYale University School of MedicineNew HavenConnecticutUSA
| | - Siyuan Wang
- Department of Radiation OncologyPeking University Shenzhen HospitalShenzhenP.R. China
| | - Wanwei Jian
- Department of Radiation TherapyThe Second Affiliated HospitalGuangzhou University of Chinese MedicineGuangzhouChina
| | - Mohammad Khan
- Department of Radiation OncologyWinship Cancer InstituteEmory UniversityAtlantaGeorgiaUSA
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Cannarozzi AL, Massimino L, Latiano A, Parigi TL, Giuliani F, Bossa F, Di Brina AL, Ungaro F, Biscaglia G, Danese S, Perri F, Palmieri O. Artificial intelligence: A new tool in the pathologist's armamentarium for the diagnosis of IBD. Comput Struct Biotechnol J 2024; 23:3407-3417. [PMID: 39345902 PMCID: PMC11437746 DOI: 10.1016/j.csbj.2024.09.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2024] [Revised: 09/06/2024] [Accepted: 09/06/2024] [Indexed: 10/01/2024] Open
Abstract
Inflammatory bowel diseases (IBD) are classified into two entities, namely Crohn's disease (CD) and ulcerative colitis (UC), which differ in disease trajectories, genetics, epidemiological, clinical, endoscopic, and histopathological aspects. As no single golden standard modality for diagnosing IBD exists, the differential diagnosis among UC, CD, and non-IBD involves a multidisciplinary approach, considering professional groups that include gastroenterologists, endoscopists, radiologists, and pathologists. In this context, histological examination of endoscopic or surgical specimens plays a fundamental role. Nevertheless, in differentiating IBD from non-IBD colitis, the histopathological evaluation of the morphological lesions is limited by sampling and subjective human judgment, leading to potential diagnostic discrepancies. To overcome these limitations, artificial intelligence (AI) techniques are emerging to enable automated analysis of medical images with advantages in accuracy, precision, and speed of investigation, increasing interest in the histological analysis of gastrointestinal inflammation. This review aims to provide an overview of the most recent knowledge and advances in AI methods, summarizing its applications in the histopathological analysis of endoscopic biopsies from IBD patients, and discussing its strengths and limitations in daily clinical practice.
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Affiliation(s)
- Anna Lucia Cannarozzi
- Division of Gastroenterology, Fondazione IRCCS - Casa Sollievo della Sofferenza, San Giovanni Rotondo, Italy
| | - Luca Massimino
- Gastroenterology and Digestive Endoscopy Department, IRCCS Ospedale San Raffaele, Milan, Italy
| | - Anna Latiano
- Division of Gastroenterology, Fondazione IRCCS - Casa Sollievo della Sofferenza, San Giovanni Rotondo, Italy
| | - Tommaso Lorenzo Parigi
- Gastroenterology and Digestive Endoscopy Department, IRCCS Ospedale San Raffaele, Milan, Italy
| | - Francesco Giuliani
- Innovation & Research Unit, Fondazione IRCCS "Casa Sollievo della Sofferenza", San Giovanni Rotondo, Italy
| | - Fabrizio Bossa
- Division of Gastroenterology, Fondazione IRCCS - Casa Sollievo della Sofferenza, San Giovanni Rotondo, Italy
| | - Anna Laura Di Brina
- Division of Gastroenterology, Fondazione IRCCS - Casa Sollievo della Sofferenza, San Giovanni Rotondo, Italy
| | - Federica Ungaro
- Gastroenterology and Digestive Endoscopy Department, IRCCS Ospedale San Raffaele, Milan, Italy
| | - Giuseppe Biscaglia
- Division of Gastroenterology, Fondazione IRCCS - Casa Sollievo della Sofferenza, San Giovanni Rotondo, Italy
| | - Silvio Danese
- Faculty of Medicine, Università Vita-Salute San Raffaele, Milan, Italy
| | - Francesco Perri
- Division of Gastroenterology, Fondazione IRCCS - Casa Sollievo della Sofferenza, San Giovanni Rotondo, Italy
| | - Orazio Palmieri
- Division of Gastroenterology, Fondazione IRCCS - Casa Sollievo della Sofferenza, San Giovanni Rotondo, Italy
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Zhang Z, Zhang W, He C, Xie J, Liang F, Zhao Y, Tan L, Lai S, Jiang X, Wei X, Zhen X, Yang R. Identification of macrotrabecular-massive hepatocellular carcinoma through multiphasic CT-based representation learning method. Med Phys 2024; 51:9017-9030. [PMID: 39311438 DOI: 10.1002/mp.17401] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2024] [Revised: 07/17/2024] [Accepted: 08/21/2024] [Indexed: 12/20/2024] Open
Abstract
BACKGROUND Macrotrabecular-massive hepatocellular carcinoma (MTM-HCC) represents an aggressive subtype of HCC and is associated with poor survival. PURPOSE To investigate the performance of a representation learning-based feature fusion strategy that employs a multiphase contrast-enhanced CT (mpCECT)-based latent feature fusion (MCLFF) model for MTM-HCC identification. METHODS A total of 206 patients (54 MTM HCC, 152 non-MTM HCC) who underwent preoperative mpCECT with surgically confirmed HCC between July 2017 and December 2022 were retrospectively included from two medical centers. Multiphasic radiomics features were extracted from manually delineated volume of interest (VOI) of all lesions on each mpCECT phase. Representation learning based MCLFF model was built to fuse multiphasic features for MTM HCC prediction, and compared with competing models using other fusion methods. Conventional imaging features and clinical factors were also evaluated and analyzed. Prediction performance was validated by ROC analysis and statistical comparisons on an internal validation and an external testing dataset. RESULTS Fusion of radiomics features from the arterial phase (AP) and portal venous phase (PAP) using MCLFF demonstrated superior performance in MTM HCC prediction, with a higher AUC of 0.857 compared with all competing models in the internal validation set. Integration of multiple radiological or clinical features further improved the overall performance, with the highest AUCs of 0.857 and 0.836 respectively achieved in the internal validation and external testing set. CONCLUSIONS Multiphasic radiomics features of AP and PVP fused by the MCLFF have demonstrated substantial potential in the accurate prediction of MTM HCC. Clinical factors and Radiological features in mpCECT contribute incremental values to the developed MCLFF strategy.
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Affiliation(s)
- Zhenyang Zhang
- Department of Radiology, the Second Affiliated Hospital, School of Medicine, South China University of Technology, Guangzhou, Guangdong, China
- Department of Radiology, Guangzhou First People's Hospital, Guangzhou Medical University, Guangzhou, Guangdong, China
- School of Biomedical Engineering, Southern Medical University, Guangzhou, Guangdong, China
| | - Wanli Zhang
- Department of Radiology, the Second Affiliated Hospital, School of Medicine, South China University of Technology, Guangzhou, Guangdong, China
- Department of Radiology, Guangzhou First People's Hospital, Guangzhou Medical University, Guangzhou, Guangdong, China
| | - Chutong He
- Medical Imaging Center, Jinan University First Affiliated Hospital, Guangzhou, Guangdong, China
| | - Jincheng Xie
- School of Biomedical Engineering, Southern Medical University, Guangzhou, Guangdong, China
| | - Fangrong Liang
- Department of Radiology, the Second Affiliated Hospital, School of Medicine, South China University of Technology, Guangzhou, Guangdong, China
- Department of Radiology, Guangzhou First People's Hospital, Guangzhou Medical University, Guangzhou, Guangdong, China
| | - Yandong Zhao
- Department of Radiology, the Second Affiliated Hospital, School of Medicine, South China University of Technology, Guangzhou, Guangdong, China
- Department of Radiology, Guangzhou First People's Hospital, Guangzhou Medical University, Guangzhou, Guangdong, China
| | - Lilian Tan
- Department of Radiology, the Second Affiliated Hospital of Guangzhou Medical University, Guangzhou, Guangdong, China
| | - Shengsheng Lai
- School of Medical Equipment, Guangdong Food and Drug Vocational College, Guangzhou, Guangdong, China
| | - Xinqing Jiang
- Department of Radiology, the Second Affiliated Hospital, School of Medicine, South China University of Technology, Guangzhou, Guangdong, China
- Department of Radiology, Guangzhou First People's Hospital, Guangzhou Medical University, Guangzhou, Guangdong, China
| | - Xinhua Wei
- Department of Radiology, the Second Affiliated Hospital, School of Medicine, South China University of Technology, Guangzhou, Guangdong, China
- Department of Radiology, Guangzhou First People's Hospital, Guangzhou Medical University, Guangzhou, Guangdong, China
| | - Xin Zhen
- School of Biomedical Engineering, Southern Medical University, Guangzhou, Guangdong, China
- Medical Big Data Center, Guangdong Provincial People's Hospital (Guangdong Academy of Medical Sciences), Southern Medical University, Guangzhou, Guangdong, China
| | - Ruimeng Yang
- Department of Radiology, the Second Affiliated Hospital, School of Medicine, South China University of Technology, Guangzhou, Guangdong, China
- Department of Radiology, Guangzhou First People's Hospital, Guangzhou Medical University, Guangzhou, Guangdong, China
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Huang Q, Zhang P, Guo Z, Li M, Tao C, Yu Z. Comprehensive analysis of transcriptomics and radiomics revealed the potential of TEDC2 as a diagnostic marker for lung adenocarcinoma. PeerJ 2024; 12:e18310. [PMID: 39553728 PMCID: PMC11569783 DOI: 10.7717/peerj.18310] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2024] [Accepted: 09/24/2024] [Indexed: 11/19/2024] Open
Abstract
Background Lung adenocarcinoma (LUAD) is a widely occurring cancer with a high death rate. Radiomics, as a high-throughput method, has a wide range of applications in different aspects of the management of multiple cancers. However, the molecular mechanism of LUAD by combining transcriptomics and radiomics in order to probe LUAD remains unclear. Methods The transcriptome data and radiomics features of LUAD were extracted from the public database. Subsequently, we used weighted gene co-expression network analysis (WGCNA) and a series of machine learning algorithms including Random Forest (RF), Least Absolute Shrinkage and Selection Operator (LASSO) logistic regression, and Support Vector Machines Recursive Feature Elimination (SVM-RFE) to proceed with the screening of diagnostic genes for LUAD. In addition, the CIBERSORT and ESTIMATE algorithms were utilized to assess the association of these genes with immune profiles. The LASSO algorithm further identified the features most relevant to the expression levels of LUAD diagnostic genes and validated the model based on receiver operating characteristic (ROC), precision-recall (PR), calibration curves and decision curve analysis (DCA) curves. Finally, RT-qPCR, transwell and cell counting kit-8 (CCK8) based assays were performed to assess the expression levels and potential functions of the screened genes in LUAD cell lines. Results We screened a total of 214 modular genes with the highest correlation with LUAD samples based on WGCNA, of which 192 genes were shown to be highly expressed in LUAD patients. Subsequently, three machine learning algorithms identified a total of four genes, including UBE2T, TEDC2, RCC1, and FAM136A, as diagnostic molecules for LUAD, and the ROC curves showed that these diagnostic molecules had good diagnostic performance (AUC values of 0.989, 0.989, 989, and 0.987, respectively). The expression of these diagnostic molecules was significantly higher in tumor samples than in normal para-cancerous tissue samples and also correlated significantly and negatively with stromal and immune scores. Specifically, we also constructed a model based on TEDC2 expression consisting of seven radiomic features. Among them, the ROC and PR curves showed that the model had an AUC value of up to 0.96, respectively. Knockdown of TEDC2 slowed down the proliferation, migration and invasion efficiency of LUAD cell lines. Conclusion In this study, we screened for diagnostic markers of LUAD and developed a non-invasive radiomics model by innovatively combining transcriptomics and radiomics data. These findings contribute to our understanding of LUAD biology and offer potential avenues for further exploration in clinical practice.
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Affiliation(s)
- Qian Huang
- Department of Hepatobiliary Disease, The Third People’s Hospital of Fujian University of Traditional Chinese Medicine, Fuzhou, China
| | - Peng Zhang
- Radiodiagnostic Department, The 900 Hospital of the Joint Service Support Force of the People’s Liberation Army of China, Fuzhou, China
| | - Zhixu Guo
- Information Department, The 900 Hospital of the Joint Service Support Force of the People’s Liberation Army of China, Fuzhou, China
| | - Min Li
- Pathology Department, The 900 Hospital of the Joint Service Support Force of the People’s Liberation Army of China, Fuzhou, China
| | - Chao Tao
- Radiodiagnostic Department, The 900 Hospital of the Joint Service Support Force of the People’s Liberation Army of China, Fuzhou, China
| | - Zongyang Yu
- Respiratory Department, The 900 Hospital of the Joint Service Support Force of the People’s Liberation Army of China, Fuzhou, China
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