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Xu H, Lv R. Rapid diagnosis of lung cancer by multi-modal spectral data combined with deep learning. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2025; 335:125997. [PMID: 40073660 DOI: 10.1016/j.saa.2025.125997] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2024] [Revised: 02/21/2025] [Accepted: 03/04/2025] [Indexed: 03/14/2025]
Abstract
Lung cancer is a malignant tumor that poses a serious threat to human health. Existing lung cancer diagnostic techniques face the challenges of high cost and slow diagnosis. Early and rapid diagnosis and treatment are essential to improve the outcome of lung cancer. In this study, a deep learning-based multi-modal spectral information fusion (MSIF) network is proposed for lung adenocarcinoma cell detection. First, multi-modal data of Fourier transform infrared spectra, UV-vis absorbance spectra, and fluorescence spectra of normal and patient cells were collected. Subsequently, the spectral text data were efficiently processed by one-dimensional convolutional neural network. The global and local features of the spectral images are deeply mined by the hybrid model of ResNet and Transformer. An adaptive depth-wise convolution (ADConv) is introduced to be applied to feature extraction, overcoming the shortcomings of conventional convolution. In order to achieve feature learning between multi-modalities, a cross-modal interaction fusion (CMIF) module is designed. This module fuses the extracted spectral image and text features in a multi-faceted interaction, enabling full utilization of multi-modal features through feature sharing. The method demonstrated excellent performance on the test sets of Fourier transform infrared spectra, UV-vis absorbance spectra and fluorescence spectra, achieving 95.83 %, 97.92 % and 100 % accuracy, respectively. In addition, experiments validate the superiority of multi-modal spectral data and the robustness of the model generalization capability. This study not only provides strong technical support for the early diagnosis of lung cancer, but also opens a new chapter for the application of multi-modal data fusion in spectroscopy.
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Affiliation(s)
- Han Xu
- State Key Laboratory of Electromechanical Integrated Manufacturing of High-performance Electronic Equipment, School of Electro-Mechanical Engineering, Xidian University, Xi'an, Shaanxi 710071, China
| | - Ruichan Lv
- State Key Laboratory of Electromechanical Integrated Manufacturing of High-performance Electronic Equipment, School of Electro-Mechanical Engineering, Xidian University, Xi'an, Shaanxi 710071, China.
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2
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Zhang J, Liu S, Wang F, Wang L, Qin J, Wen L, Wan W. Spectral Differentiation of Esophageal Precancerous Lesion Staging and an Improved Feature Wavelength Selection Method Based on Enhanced Fox Algorithm. JOURNAL OF BIOPHOTONICS 2025; 18:e202400518. [PMID: 39988484 DOI: 10.1002/jbio.202400518] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2024] [Revised: 01/11/2025] [Accepted: 02/11/2025] [Indexed: 02/25/2025]
Abstract
Near-infrared (NIR) spectroscopy, known for its non-destructive, rapid, and precise nature, captures spectral responses to chemical bond changes in cancerous tissues. This provides a promising approach for accurate cancer staging and identifying spectral differences between cancerous and healthy tissues. In this study, NIR data from esophageal lesions excised via endoscopic submucosal dissection were analyzed using partial least squares discriminant analysis (PLS-DA) to classify normal tissues, low-grade, and high-grade intraepithelial neoplasia, confirming its feasibility for staging diagnosis. To enhance wavelength selection, the FOX algorithm, a swarm intelligence optimization method, is improved with two modifications: a nonlinear time-varying sigmoid transfer function and mirror selection. These enhancements are combined to form an improved FOX algorithm (iFOX) for wavelength selection. iFOX effectively enhances the algorithm's stability while enhancing classification performance.
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Affiliation(s)
- Jinbao Zhang
- School of Information Engineering, Southwest University of Science and Technology, Mianyang, China
| | - Shuangli Liu
- School of Information Engineering, Southwest University of Science and Technology, Mianyang, China
| | - Fanrong Wang
- Department of Gastroenterology, Sichuan Mianyang 404 Hospital, Mianyang, China
| | - Li Wang
- Department of Gastroenterology, Sichuan Mianyang 404 Hospital, Mianyang, China
| | - Jiamin Qin
- Department of Gastroenterology, Sichuan Mianyang 404 Hospital, Mianyang, China
| | - Liming Wen
- Department of Gastroenterology, Sichuan Mianyang 404 Hospital, Mianyang, China
| | - Weijia Wan
- School of Information Engineering, Southwest University of Science and Technology, Mianyang, China
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3
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Lin M, Lu HC, Lin HW, Pan SW, Cheng BM, Tseng TR, Feng JY, Ho ML. Fast Screening of Tuberculosis Patients Based on Analysis of Plasma by Infrared Spectroscopy Coupled with Machine Learning Approaches. ACS OMEGA 2025; 10:11817-11827. [PMID: 40191314 PMCID: PMC11966281 DOI: 10.1021/acsomega.4c07990] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/30/2024] [Revised: 03/11/2025] [Accepted: 03/13/2025] [Indexed: 04/09/2025]
Abstract
Prompt diagnosis of tuberculosis (TB) enables timely treatment, limiting spread and improving public health for this disease. Currently, a rapid, sensitive, accurate, and cost-effective detection of TB still remains a challenge. For this purpose, we engaged a transmission skill and an attenuated total reflectance (ATR) technique coupled with Fourier-transform infrared spectrometry (FTIR) to study the IR spectra of the plasma samples from TB patients (n = 10) and healthy individuals (n = 10). To ensure high-quality spectral data, spectra were collected in both transmission and ATR modes, with each measurement consisting of 256 scans at a resolution of 8 cm-1. For the transmission mode, measurements were repeated five times per sample, while ATR-FTIR measurements were repeated three times per sample. These parameters were carefully optimized through rigorous testing to achieve the highest possible signal-to-noise ratio for patient sample analysis. Using this method, we obtained a total of 100 spectra from 20 samples in the transmission mode and 60 spectra in the ATR-FTIR mode, ensuring sufficient data for robust spectral analysis. Further, we applied machine learning techniques to analyze and classify the IR spectra; by this means, we differentiated those spectra between TB patients and healthy ones. In this work, we modified the transmission-FTIR setup to improve the absorption sensitivity by focusing the IR light on the interface of the sample; while, we used a high-refractive-index crystal ZnSe as a medium to reflect the signals in ATR scheme. Routinely, we compared the spectra obtained from both methods; in their second derivative curves, we notified that there had distinct spectral differences in protein and lipid regions (3500-3000, 2900-2800, and 1700-1500 cm-1) between TB and healthy groups. Using three machine learning classifiers-Logistic Regression (LR), Random Forest (RF), and XGBoost (Xg)-we found that the Xg achieved an accuracy of 0.749, precision of 0.703, recall of 0.901, F1 score of 0.790, and an AUC of the ROC curve of 0.82 for absorption spectra in the 3500-2700 cm-1 region; additionally, the machine learning practice showed that ATR data possessed performance parameters of ∼ 80% in accuracy. We randomly assigned participants (rather than individual scans) to 80% training and 20% test sets to train and validate three machine learning models (LR, RF, and Xg). Based on the results, we concluded that the absorption spectroscopic method demonstrated its superior performance in TB diagnosis. Thus, we have showed that absorption-FTIR spectroscopy is a valuable tool for sorting the TB disease from patients. The spectral IR analysis of plasmas can complement clinical evidence and provides a rapid and accurate diagnosis of TB in clinic.
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Affiliation(s)
- Mei Lin
- Department
of Chemistry, Fu Jen Catholic University, New Taipei City 242, Taiwan
| | - Hsiao-Chi Lu
- Department
of Medical Research, Hualien Tzu Chi Hospital, Buddhist Tzu Chi Medical Foundation, No. 707, Sec. 3, Chung-Yang Rd., Hualien City 97002, Taiwan
| | - Hui-Wen Lin
- Department
of Mathematics, Soochow University, Taipei 111, Taiwan
| | - Sheng-Wei Pan
- Department
of Chest Medicine, Taipei Veterans General
Hospital, Taipei 11217, Taiwan
- School
of Medicine, National Yang Ming Chiao Tung
University, Taipei 12304, Taiwan
| | - Bing-Ming Cheng
- Department
of Medical Research, Hualien Tzu Chi Hospital, Buddhist Tzu Chi Medical Foundation, No. 707, Sec. 3, Chung-Yang Rd., Hualien City 97002, Taiwan
- Center for
General Education, Tzu Chi University, No. 880, Sec. 2, Chien-kuo Rd., Hualien City 97005, Taiwan
| | - Ton-Rong Tseng
- Mastek
Technologies, Inc., 4F-4,
No. 13, Wuquan first Rd., Xinzhuang, New Taipei
City 24892, Taiwan
| | - Jia-Yih Feng
- Department
of Chest Medicine, Taipei Veterans General
Hospital, Taipei 11217, Taiwan
- School
of Medicine, National Yang Ming Chiao Tung
University, Taipei 12304, Taiwan
| | - Mei-Lin Ho
- Department
of Chemistry, Fu Jen Catholic University, New Taipei City 242, Taiwan
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Zhang WY, Chang YJ, Shi RH. Artificial intelligence enhances the management of esophageal squamous cell carcinoma in the precision oncology era. World J Gastroenterol 2024; 30:4267-4280. [PMID: 39492825 PMCID: PMC11525855 DOI: 10.3748/wjg.v30.i39.4267] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/28/2024] [Revised: 08/31/2024] [Accepted: 09/19/2024] [Indexed: 10/12/2024] Open
Abstract
Esophageal squamous cell carcinoma (ESCC) is the most common histological type of esophageal cancer with a poor prognosis. Early diagnosis and prognosis assessment are crucial for improving the survival rate of ESCC patients. With the advancement of artificial intelligence (AI) technology and the proliferation of medical digital information, AI has demonstrated promising sensitivity and accuracy in assisting precise detection, treatment decision-making, and prognosis assessment of ESCC. It has become a unique opportunity to enhance comprehensive clinical management of ESCC in the era of precision oncology. This review examines how AI is applied to the diagnosis, treatment, and prognosis assessment of ESCC in the era of precision oncology, and analyzes the challenges and potential opportunities that AI faces in clinical translation. Through insights into future prospects, it is hoped that this review will contribute to the real-world application of AI in future clinical settings, ultimately alleviating the disease burden caused by ESCC.
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Affiliation(s)
- Wan-Yue Zhang
- School of Medicine, Southeast University, Nanjing 221000, Jiangsu Province, China
| | - Yong-Jian Chang
- School of Cyber Science and Engineering, Southeast University, Nanjing 210009, Jiangsu Province, China
| | - Rui-Hua Shi
- Department of Gastroenterology, Zhongda Hospital, Southeast University, Nanjing 210009, Jiangsu Province, China
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Farooq S, Del-Valle M, Dos Santos SN, Bernardes ES, Zezell DM. Recognition of breast cancer subtypes using FTIR hyperspectral data. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2024; 310:123941. [PMID: 38290283 DOI: 10.1016/j.saa.2024.123941] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/22/2023] [Revised: 12/22/2023] [Accepted: 01/20/2024] [Indexed: 02/01/2024]
Abstract
Fourier-transform infrared spectroscopy (FTIR) is a powerful, non-destructive, highly sensitive and a promising analytical technique to provide spectrochemical signatures of biological samples, where markers like carbohydrates, proteins, and phosphate groups of DNA can be recognized in biological micro-environment. However, method of measurements of large cells need an excessive time to achieve high quality images, making its clinical use difficult due to speed of data-acquisition and lack of optimized computational procedures. To address such challenges, Machine Learning (ML) based technologies can assist to assess an accurate prognostication of breast cancer (BC) subtypes with high performance. Here, we applied FTIR spectroscopy to identify breast cancer subtypes in order to differentiate between luminal (BT474) and non-luminal (SKBR3) molecular subtypes. For this reason, we tested multivariate classification technique to extract feature information employing three-dimension (3D)-discriminant analysis approach based on 3D-principle component analysis-linear discriminant analysis (3D-PCA-LDA) and 3D-principal component analysis-quadratic discriminant analysis (3D-PCA-QDA), showing an improvement in sensitivity (98%), specificity (94%) and accuracy (98%) parameters compared to conventional unfolded methods. Our results evidence that 3D-PCA-LDA and 3D-PCA-QDA are potential tools for discriminant analysis of hyperspectral dataset to obtain superior classification assessment.
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Affiliation(s)
- Sajid Farooq
- Center for Lasers and Applications, Instituto de Pesquisas Energeticas e Nucleares, IPEN-CNEN, Address One, Sao Paulo, 05508-000, Sao Paulo, Brazil
| | - Matheus Del-Valle
- Center for Lasers and Applications, Instituto de Pesquisas Energeticas e Nucleares, IPEN-CNEN, Address One, Sao Paulo, 05508-000, Sao Paulo, Brazil
| | - Sofia Nascimento Dos Santos
- Center for Radiopharmaceutics, Instituto de Pesquisas Energeticas e Nucleares, IPEN-CNEN, Address One, Sao Paulo, 05508-000, Sao Paulo, Brazil
| | - Emerson Soares Bernardes
- Center for Radiopharmaceutics, Instituto de Pesquisas Energeticas e Nucleares, IPEN-CNEN, Address One, Sao Paulo, 05508-000, Sao Paulo, Brazil
| | - Denise Maria Zezell
- Center for Lasers and Applications, Instituto de Pesquisas Energeticas e Nucleares, IPEN-CNEN, Address One, Sao Paulo, 05508-000, Sao Paulo, Brazil.
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Zlotnikov ID, Ezhov AA, Dobryakova NV, Kudryashova EV. Disulfide Cross-Linked Polymeric Redox-Responsive Nanocarrier Based on Heparin, Chitosan and Lipoic Acid Improved Drug Accumulation, Increased Cytotoxicity and Selectivity to Leukemia Cells by Tumor Targeting via "Aikido" Principle. Gels 2024; 10:157. [PMID: 38534575 DOI: 10.3390/gels10030157] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2024] [Revised: 02/13/2024] [Accepted: 02/17/2024] [Indexed: 03/28/2024] Open
Abstract
We have developed a micellar formulation of anticancer drugs based on chitosan and heparin grafted with lipoic and oleic acids that can release the cytotoxic cargo (doxorubicin) in response to external stimuli, such as increased glutathione concentration-a hallmark of cancer. Natural polysaccharides (heparin and chitosan) provide the pH sensitivity of the nanocarrier: the release of doxorubicin (Dox) is enhanced in a slightly acidic environment (tumor microenvironment). Fatty acid residues are necessary for the formation of nanoparticles (micelles) and solubilization of cytostatics in a hydrophobic core. Lipoic acid residues provide the formation of a labile S-S cross-linking between polymer chains (the first variant) or covalently attached doxorubicin molecules through glutathione-sensitive S-S bridges (the second variant)-both determine Redox sensitivity of the anticancer drugs carriers stable in blood circulation and disintegrate after intracellular uptake in the tumor cells. The release of doxorubicin from micelles occurs slowly (20%/6 h) in an environment with a pH of 7.4 and the absence of glutathione, while in a slightly acidic environment and in the presence of 10 mM glutathione, the rate increases up to 6 times, with an increase in the effective concentration up to 5 times after 7 h. The permeability of doxorubicin in micellar formulations (covalent S-S cross-linked and not) into Raji, K562, and A875 cancer cells was studied using FTIR, fluorescence spectroscopy and confocal laser scanning microscopy (CLSM). We have shown dramatically improved accumulation, decreased efflux, and increased cytotoxicity compared to doxorubicin control with three tumor cell lines: Raji, K562, and A875. At the same time, cytotoxicity and permeability for non-tumor cells (HEK293T) are significantly lower, increasing the selectivity index against tumor cells by several times.
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Affiliation(s)
- Igor D Zlotnikov
- Faculty of Chemistry, Lomonosov Moscow State University, Leninskie Gory, 1/3, 119991 Moscow, Russia
| | - Alexander A Ezhov
- Faculty of Physics, Lomonosov Moscow State University, Leninskie Gory, 1/2, 119991 Moscow, Russia
| | - Natalia V Dobryakova
- Faculty of Chemistry, Lomonosov Moscow State University, Leninskie Gory, 1/3, 119991 Moscow, Russia
| | - Elena V Kudryashova
- Faculty of Chemistry, Lomonosov Moscow State University, Leninskie Gory, 1/3, 119991 Moscow, Russia
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Shuai W, Wu X, Chen C, Zuo E, Chen X, Li Z, Lv X, Wu L, Chen C. Rapid diagnosis of rheumatoid arthritis and ankylosing spondylitis based on Fourier transform infrared spectroscopy and deep learning. Photodiagnosis Photodyn Ther 2024; 45:103885. [PMID: 37931694 DOI: 10.1016/j.pdpdt.2023.103885] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2023] [Revised: 09/26/2023] [Accepted: 11/03/2023] [Indexed: 11/08/2023]
Abstract
OBJECTIVE Rheumatoid arthritis and Ankylosing spondylitis are two common autoimmune inflammatory rheumatic diseases that negatively affect activities of daily living and can lead to structural and functional disability, reduced quality of life. Here, this study utilized Fourier transform infrared (FTIR) spectroscopy on dried serum samples and achieved early diagnosis of rheumatoid arthritis and ankylosing spondylitis based on deep learning models. METHOD A total of 243 dried serum samples were collected in this study, including 81 samples each from ankylosing spondylitis, rheumatoid arthritis, and healthy controls. Three multi-scale convolutional modules with different specifications were designed based on the multi-scale convolutional neural network (MSCNN) to effectively fuse the local features to enhance the generalization ability of the model. The FTIR was then combined with the MSCNN model to achieve a non-invasive, fast, and accurate diagnosis of ankylosing spondylitis, rheumatoid arthritis, and healthy controls. RESULTS Spectral analysis shows that the curves and waveforms of the three spectral graphs are similar. The main differences are distributed in the spectral regions of 3300-3250 cm-1, 3000-2800 cm-1, 1750-1500 cm-1, and 1500-1300 cm-1, which represent: Amides, fatty acids, cholesterol, proteins with a carboxyl group, amide II, free amino acids, and polysaccharides. Four classification models, namely artificial neural network (ANN), convolutional neural network (CNN), improved AlexNet model, and multi-scale convolutional neural network (MSCNN) were established. Through comparison, it was found that the diagnostic AUC value of the MSCNN model was 0.99, and the accuracy rate was as high as 0.93, which was much higher than the other three models. CONCLUSION The study demonstrated the superiority of MSCNN in distinguishing ankylosing spondylitis from rheumatoid arthritis and healthy controls. FTIR may become a rapid, sensitive, and non-invasive means of diagnosing rheumatism.
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Affiliation(s)
- Wei Shuai
- College of Software, Xinjiang University, Urumqi, China
| | - Xue Wu
- Department of Rheumatology and Immunology, People's Hospital of Xinjiang Uygur Autonomous Region, Urumqi, China; Xinjiang Clinical Research Center for Rheumatoid arthritis, Urumqi, China
| | - Chen Chen
- College of Information Science and Engineering, Xinjiang University, Urumqi, China
| | - Enguang Zuo
- College of Information Science and Engineering, Xinjiang University, Urumqi, China
| | - Xiaomei Chen
- Department of Rheumatology and Immunology, People's Hospital of Xinjiang Uygur Autonomous Region, Urumqi, China; Xinjiang Clinical Research Center for Rheumatoid arthritis, Urumqi, China
| | - Zhengfang Li
- Department of Rheumatology and Immunology, People's Hospital of Xinjiang Uygur Autonomous Region, Urumqi, China; Xinjiang Clinical Research Center for Rheumatoid arthritis, Urumqi, China
| | - Xiaoyi Lv
- College of Software, Xinjiang University, Urumqi, China; Key Laboratory of signal detection and processing, Xinjiang University, Urumqi, China
| | - Lijun Wu
- Department of Rheumatology and Immunology, People's Hospital of Xinjiang Uygur Autonomous Region, Urumqi, China; Xinjiang Clinical Research Center for Rheumatoid arthritis, Urumqi, China.
| | - Cheng Chen
- College of Software, Xinjiang University, Urumqi, China.
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Wu X, Shuai W, Chen C, Chen X, Luo C, Chen Y, Shi Y, Li Z, Lv X, Chen C, Meng X, Lei X, Wu L. Rapid screening for autoimmune diseases using Fourier transform infrared spectroscopy and deep learning algorithms. Front Immunol 2023; 14:1328228. [PMID: 38162641 PMCID: PMC10754999 DOI: 10.3389/fimmu.2023.1328228] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2023] [Accepted: 11/27/2023] [Indexed: 01/03/2024] Open
Abstract
Introduce Ankylosing spondylitis (AS), rheumatoid arthritis (RA), and osteoarthritis (OA) are three rheumatic immune diseases with many common characteristics. If left untreated, they can lead to joint destruction and functional limitation, and in severe cases, they can cause lifelong disability and even death. Studies have shown that early diagnosis and treatment are key to improving patient outcomes. Therefore, a rapid and accurate method for rapid diagnosis of diseases has been established, which is of great clinical significance for realizing early diagnosis of diseases and improving patient prognosis. Methods This study was based on Fourier transform infrared spectroscopy (FTIR) combined with a deep learning model to achieve non-invasive, rapid, and accurate differentiation of AS, RA, OA, and healthy control group. In the experiment, 320 serum samples were collected, 80 in each group. AlexNet, ResNet, MSCNN, and MSResNet diagnostic models were established by using a machine learning algorithm. Result The range of spectral wave number measured by four sets of Fourier transform infrared spectroscopy is 700-4000 cm-1. Serum spectral characteristic peaks were mainly at 1641 cm-1(amide I), 1542 cm-1(amide II), 3280 cm-1(amide A), 1420 cm-1(proline and tryptophan), 1245 cm-1(amide III), 1078 cm-1(carbohydrate region). And 2940 cm-1 (mainly fatty acids and cholesterol). At the same time, AlexNet, ResNet, MSCNN, and MSResNet diagnostic models are established by using machine learning algorithms. The multi-scale MSResNet classification model combined with residual blocks can use convolution modules of different scales to extract different scale features and use resblocks to solve the problem of network degradation, reduce the interference of spectral measurement noise, and enhance the generalization ability of the network model. By comparing the experimental results of the other three models AlexNet, ResNet, and MSCNN, it is found that the MSResNet model has the best diagnostic performance and the accuracy rate is 0.87. Conclusion The results prove the feasibility of serum Fourier transform infrared spectroscopy combined with a deep learning algorithm to distinguish AS, RA, OA, and healthy control group, which can be used as an effective auxiliary diagnostic method for these rheumatic immune diseases.
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Affiliation(s)
- Xue Wu
- Department of Rheumatology and Immunology, People’s Hospital of Xinjiang Uygur Autonomous Region, Urumqi, Xinjiang, China
- Graduate School of Xinjiang Medical University, Urumqi, Xinjiang, China
| | - Wei Shuai
- College of Software, Xinjiang University, Urumqi, Xinjiang, China
| | - Chen Chen
- College of Information Science and Engineering, Xinjiang University, Urumqi, Xinjiang, China
| | - Xiaomei Chen
- Department of Rheumatology and Immunology, People’s Hospital of Xinjiang Uygur Autonomous Region, Urumqi, Xinjiang, China
- Graduate School of Xinjiang Medical University, Urumqi, Xinjiang, China
| | - Cainan Luo
- Department of Rheumatology and Immunology, People’s Hospital of Xinjiang Uygur Autonomous Region, Urumqi, Xinjiang, China
- Graduate School of Xinjiang Medical University, Urumqi, Xinjiang, China
| | - Yi Chen
- Department of Rheumatology and Immunology, People’s Hospital of Xinjiang Uygur Autonomous Region, Urumqi, Xinjiang, China
- Graduate School of Xinjiang Medical University, Urumqi, Xinjiang, China
| | - Yamei Shi
- Department of Rheumatology and Immunology, People’s Hospital of Xinjiang Uygur Autonomous Region, Urumqi, Xinjiang, China
- Graduate School of Xinjiang Medical University, Urumqi, Xinjiang, China
| | - Zhengfang Li
- Department of Rheumatology and Immunology, People’s Hospital of Xinjiang Uygur Autonomous Region, Urumqi, Xinjiang, China
- Graduate School of Xinjiang Medical University, Urumqi, Xinjiang, China
| | - Xiaoyi Lv
- College of Software, Xinjiang University, Urumqi, Xinjiang, China
| | - Cheng Chen
- College of Software, Xinjiang University, Urumqi, Xinjiang, China
| | - Xinyan Meng
- Department of Rheumatology and Immunology, People’s Hospital of Xinjiang Uygur Autonomous Region, Urumqi, Xinjiang, China
- Graduate School of Xinjiang Medical University, Urumqi, Xinjiang, China
| | - Xin Lei
- Department of Rheumatology and Immunology, People’s Hospital of Xinjiang Uygur Autonomous Region, Urumqi, Xinjiang, China
- Graduate School of Xinjiang Medical University, Urumqi, Xinjiang, China
| | - Lijun Wu
- Department of Rheumatology and Immunology, People’s Hospital of Xinjiang Uygur Autonomous Region, Urumqi, Xinjiang, China
- Graduate School of Xinjiang Medical University, Urumqi, Xinjiang, China
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Rostoka E, Shvirksts K, Salna E, Trapina I, Fedulovs A, Grube M, Sokolovska J. Prediction of type 1 diabetes with machine learning algorithms based on FTIR spectral data in peripheral blood mononuclear cells. ANALYTICAL METHODS : ADVANCING METHODS AND APPLICATIONS 2023; 15:4926-4937. [PMID: 37721124 DOI: 10.1039/d3ay01080e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/19/2023]
Abstract
The incidence of autoimmunity is increasing, to ensure timely and comprehensive treatment, there must be a diagnostic method or markers that would be available to the general public. Fourier-transform infrared spectroscopy (FTIR) is a relatively inexpensive and accurate method for determining metabolic fingerprint. The metabolism, molecular composition and function of blood cells vary according to individual physiological and pathological conditions. Thus, by obtaining autoimmune disease-specific metabolic fingerprint markers in peripheral blood mononuclear cells (PBMC) and subsequently using machine learning algorithms, it might be possible to create a tool that will allow the diagnosis of autoimmune diseases. In this preliminary study, it was found that the peak shift at 1545 cm-1 could be considered specific for autoimmune disease type 1 diabetes (T1D), while the shifts at 1070 and 1417 cm-1 could be more attributed to the autoimmune condition per se. The prediction of T1D, despite the small number of participants in the study, showed an inverse AUC = 0.33 ± 0.096, n = 15, indicating a stable trend in the prediction of T1D based on FTIR metabolic fingerprint data in the PBMC.
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Affiliation(s)
- Evita Rostoka
- Faculty of Medicine, University of Latvia, Jelgavas iela 3, LV 1004, Riga, Latvia.
| | - Karlis Shvirksts
- Institute of Microbiology and Biotechnology, University of Latvia, Jelgavas iela 1, LV1004, Riga, Latvia
| | - Edgars Salna
- Faculty of Medicine, University of Latvia, Jelgavas iela 3, LV 1004, Riga, Latvia.
| | - Ilva Trapina
- Institute of Biology, University of Latvia, Jelgavas iela 1, LV1004 Riga, Latvia
| | - Aleksejs Fedulovs
- Faculty of Medicine, University of Latvia, Jelgavas iela 3, LV 1004, Riga, Latvia.
| | - Mara Grube
- Institute of Microbiology and Biotechnology, University of Latvia, Jelgavas iela 1, LV1004, Riga, Latvia
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10
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Pan Y, He L, Chen W, Yang Y. The current state of artificial intelligence in endoscopic diagnosis of early esophageal squamous cell carcinoma. Front Oncol 2023; 13:1198941. [PMID: 37293591 PMCID: PMC10247226 DOI: 10.3389/fonc.2023.1198941] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2023] [Accepted: 05/16/2023] [Indexed: 06/10/2023] Open
Abstract
Esophageal squamous cell carcinoma (ESCC) is a common malignant tumor of the digestive tract. The most effective method of reducing the disease burden in areas with a high incidence of esophageal cancer is to prevent the disease from developing into invasive cancer through screening. Endoscopic screening is key for the early diagnosis and treatment of ESCC. However, due to the uneven professional level of endoscopists, there are still many missed cases because of failure to recognize lesions. In recent years, along with remarkable progress in medical imaging and video evaluation technology based on deep machine learning, the development of artificial intelligence (AI) is expected to provide new auxiliary methods of endoscopic diagnosis and the treatment of early ESCC. The convolution neural network (CNN) in the deep learning model extracts the key features of the input image data using continuous convolution layers and then classifies images through full-layer connections. The CNN is widely used in medical image classification, and greatly improves the accuracy of endoscopic image classification. This review focuses on the AI-assisted diagnosis of early ESCC and prediction of early ESCC invasion depth under multiple imaging modalities. The excellent image recognition ability of AI is suitable for the detection and diagnosis of ESCC and can reduce missed diagnoses and help endoscopists better complete endoscopic examinations. However, the selective bias used in the training dataset of the AI system affects its general utility.
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Affiliation(s)
- Yuwei Pan
- Department of Gastroenterology, Chongqing University Cancer Hospital, Chongqing, China
| | - Lanying He
- Department of Gastroenterology, Chongqing University Cancer Hospital, Chongqing, China
| | - Weiqing Chen
- Department of Gastroenterology, Chongqing University Cancer Hospital, Chongqing, China
- Chongqing Key Laboratory of Translational Research for Cancer Metastasis and Individualized Treatment, Chongqing University Cancer Hospital, Chongqing, China
| | - Yongtao Yang
- Department of Gastroenterology, Chongqing University Cancer Hospital, Chongqing, China
- Chongqing Key Laboratory of Translational Research for Cancer Metastasis and Individualized Treatment, Chongqing University Cancer Hospital, Chongqing, China
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