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Hasan MZ, Rony MAH, Chowa SS, Bhuiyan MRI, Moustafa AA. GBCHV an advanced deep learning anatomy aware model for accurate classification of gallbladder cancer utilizing ultrasound images. Sci Rep 2025; 15:7120. [PMID: 40016258 PMCID: PMC11868569 DOI: 10.1038/s41598-025-89232-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2024] [Accepted: 02/04/2025] [Indexed: 03/01/2025] Open
Abstract
This study introduces a novel deep learning approach aimed at accurately classifying Gallbladder Cancer (GBC) into benign, malignant, and normal categories using ultrasound images from the challenging GBC USG (GBCU) dataset. The proposed methodology enhances image quality and specifies gallbladder wall boundaries by employing sophisticated image processing techniques like median filtering and contrast-limited adaptive histogram equalization. Unlike traditional convolutional neural networks, which struggle with complex spatial patterns, the proposed transformer-based model, GBC Horizontal-Vertical Transformer (GBCHV), incorporates a GBCHV-Trans block with self-attention mechanisms. In order to make the model anatomy-aware, the square-shaped input patches of the transformer are transformed into horizontal and vertical strips to obtain distinctive spatial relationships within gallbladder tissues. The novelty of this model lies in its anatomy-aware mechanism, which employs horizontal-vertical strip transformations to depict spatial relationships and complex anatomical features of the gallbladder more accurately. The proposed model achieved an overall diagnostic accuracy of 96.21% by performing an ablation study. A performance comparison between the proposed model and seven transfer learning models is further conducted, where the proposed model consistently outperformed the transfer learning models, showcasing its superior accuracy and robustness. Moreover, the decision-making process of the proposed model is further explained visually through the utilization of Gradient-weighted Class Activation Mapping (Grad-CAM). With the integration of advanced deep learning and image processing techniques, the GBCHV-Trans model offers a promising solution for precise and early-stage classification of GBC, surpassing conventional methods with superior accuracy and diagnostic efficacy.
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Affiliation(s)
- Md Zahid Hasan
- Health Informatics Research Laboratory (HIRL), Department of Computer Science and Engineering, Daffodil International University, Dhaka, 1341, Bangladesh.
| | - Md Awlad Hossen Rony
- Health Informatics Research Laboratory (HIRL), Department of Computer Science and Engineering, Daffodil International University, Dhaka, 1341, Bangladesh
| | - Sadia Sultana Chowa
- Health Informatics Research Laboratory (HIRL), Department of Computer Science and Engineering, Daffodil International University, Dhaka, 1341, Bangladesh
| | - Md Rahad Islam Bhuiyan
- Health Informatics Research Laboratory (HIRL), Department of Computer Science and Engineering, Daffodil International University, Dhaka, 1341, Bangladesh
| | - Ahmed A Moustafa
- School of Psychology, Faculty of Society and Design, Bond University, Gold Coast (City), QLD, Australia
- Department of Human Anatomy and Physiology, The Faculty of Health Sciences, University of Johannesburg, Johannesburg, South Africa
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Kumar D, Mehta MA, Kotecha K, Kulkarni A. Computer-aided cholelithiasis diagnosis using explainable convolutional neural network. Sci Rep 2025; 15:4249. [PMID: 39905177 PMCID: PMC11794719 DOI: 10.1038/s41598-025-85798-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2024] [Accepted: 01/06/2025] [Indexed: 02/06/2025] Open
Abstract
Accurate and precise identification of cholelithiasis is essential for saving the lives of millions of people worldwide. Although several computer-aided cholelithiasis diagnosis approaches have been introduced in the literature, their use is limited because Convolutional Neural Network (CNN) models are black box in nature. Therefore, a novel approach for cholelithiasis classification using custom CNN with post-hoc model explanation is proposed. This paper presents multiple contributions. First, a custom CNN architecture is proposed to classify and predict cholelithiasis from ultrasound image. Second, a modified deep convolutional generative adversarial network is proposed to produce synthetic ultrasound images for better model generalization. Third, a hybrid visual explanation method is proposed by combining gradient-weighted class activation with local interpretable model agnostic explanation to generate a visual explanation using a heatmap. Fourth, an exhaustive performance analysis of the proposed approach on ultrasound images collected from three different Indian hospitals is presented to showcase its efficacy for computer-aided cholelithiasis diagnosis. Fifth, a team of radiologists evaluates and validates the prediction and respective visual explanations made using the proposed approach. The results reveal that the proposed cholelithiasis classification approach beats the performance of state-of-the-art pre-trained CNN and Vision Transformer models. The heatmap generated through the proposed hybrid explanation method offers detailed visual explanations to enhance transparency and trustworthiness in the medical domain.
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Affiliation(s)
- Dheeraj Kumar
- Department of Computer/IT Engineering, Gujarat Technological University, Ahmedabad, India.
- IT Department, Parul Institute of Engineering & Technology, Parul University, Vadodara, India.
| | - Mayuri A Mehta
- Department of Computer Engineering, Sarvajanik College of Engineering and Technology, Surat, India
| | - Ketan Kotecha
- Symbiosis Centre for Applied Artificial Intelligence, Symbiosis Institute of Technology, Symbiosis International University, Pune, India
- People's Friendship University of Russia Named After Patrice Lumumba (RUDN University), Moscow, Russian Federation
| | - Ambarish Kulkarni
- Computer Aided Engineering, School of Engineering, Swinburne University of Technology, Melbourne, Australia
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He JJ, Xiong WL, Sun WQ, Pan QY, Xie LT, Jiang TA. Advances and current research status of early diagnosis for gallbladder cancer. Hepatobiliary Pancreat Dis Int 2024:S1499-3872(24)00123-1. [PMID: 39393997 DOI: 10.1016/j.hbpd.2024.09.011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/04/2024] [Accepted: 09/26/2024] [Indexed: 10/13/2024]
Abstract
Gallbladder cancer (GBC) is the most common malignant tumor in the biliary system, characterized by high malignancy, aggressiveness, and poor prognosis. Early diagnosis holds paramount importance in ameliorating therapeutic outcomes. Presently, the clinical diagnosis of GBC primarily relies on clinical-radiological-pathological approach. However, there remains a potential for missed diagnosis and misdiagnose in the realm of clinical practice. We firstly analyzed the blood-based biomarkers, such as carcinoembryonic antigen and carbohydrate antigen 19-9. Subsequently, we evaluated the diagnostic performance of various imaging modalities, including ultrasound (US), endoscopic ultrasound (EUS), computed tomography (CT), magnetic resonance imaging (MRI), positron emission tomography/computed tomography (PET/CT) and pathological examination, emphasizing their strengths and limitations in detecting early-stage GBC. Furthermore, we explored the potential of emerging technologies, particularly artificial intelligence (AI) and liquid biopsy, to revolutionize GBC diagnosis. AI algorithms have demonstrated improved image analysis capabilities, while liquid biopsy offers the promise of non-invasive and real-time monitoring. However, the translation of these advancements into clinical practice necessitates further validation and standardization. The review highlighted the advantages and limitations of current diagnostic approaches and underscored the need for innovative strategies to enhance diagnostic accuracy of GBC. In addition, we emphasized the importance of multidisciplinary collaboration to improve early diagnosis of GBC and ultimately patient outcomes. This review endeavoured to impart fresh perspectives and insights into the early diagnosis of GBC.
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Affiliation(s)
- Jia-Jia He
- Department of Ultrasound Medicine, The First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou 310003, China; Department of Ultrasound Medicine, Beilun District People's Hospital, Ningbo 315800, China
| | - Wei-Lv Xiong
- Department of Ultrasound Medicine, The First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou 310003, China; Department of Ultrasound Medicine, Huzhou Central Hospital, Huzhou 313000, China
| | - Wei-Qi Sun
- Department of Ultrasound Medicine, The First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou 310003, China; Department of Ultrasound Medicine, The Second Affiliated Hospital, Jiaxing University, Jiaxing 314000, China
| | - Qun-Yan Pan
- Department of Ultrasound Medicine, Beilun District People's Hospital, Ningbo 315800, China
| | - Li-Ting Xie
- Department of Ultrasound Medicine, The First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou 310003, China
| | - Tian-An Jiang
- Department of Ultrasound Medicine, The First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou 310003, China.
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Obaid AM, Turki A, Bellaaj H, Ksantini M. Diagnosis of Gallbladder Disease Using Artificial Intelligence: A Comparative Study. INT J COMPUT INT SYS 2024; 17:46. [DOI: 10.1007/s44196-024-00431-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2023] [Accepted: 02/05/2024] [Indexed: 01/05/2025] Open
Abstract
AbstractGallbladder (GB) disease is a common pathology that needs correct and early diagnosis for the optimum medical treatment. Early diagnosis is crucial as any delay or misdiagnosis can worsen the patient situation. Incorrect diagnosis could also lead to an escalation in patient symptoms and poorer clinical outcomes. The use of Artificial Intelligence (AI) techniques, ranging from Machine Learning (ML) to Deep Learning (DL) to predict disease progression, identify abnormalities, and estimate mortality rates associated with GB disorders has increased over the past decade. To this end, this paper provides a comprehensive overview of the AI approaches used in the diagnosis of GB illnesses. This review compiles and compares relevant papers from the last decade to show how AI might enhance diagnostic precision, speed, and efficiency. Therefore, this survey gives researchers the opportunity to find out both the diagnosis of GB diseases and AI techniques in one place. The maximum accuracy rate by ML was when using SVM with 96.67%, whilst the maximum accuracy rate by DL was by utilising a unique structure of VGG, GoogleNet, ResNet, AlexNet and Inception with 98.77%. This could provide a clear path for further investigations and algorithm’s development to boost diagnostic results to improve the patient’s condition and choose the appropriate treatment.
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Ling Y, Wang Y, Dai W, Yu J, Liang P, Kong D. MTANet: Multi-Task Attention Network for Automatic Medical Image Segmentation and Classification. IEEE TRANSACTIONS ON MEDICAL IMAGING 2024; 43:674-685. [PMID: 37725719 DOI: 10.1109/tmi.2023.3317088] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/21/2023]
Abstract
Medical image segmentation and classification are two of the most key steps in computer-aided clinical diagnosis. The region of interest were usually segmented in a proper manner to extract useful features for further disease classification. However, these methods are computationally complex and time-consuming. In this paper, we proposed a one-stage multi-task attention network (MTANet) which efficiently classifies objects in an image while generating a high-quality segmentation mask for each medical object. A reverse addition attention module was designed in the segmentation task to fusion areas in global map and boundary cues in high-resolution features, and an attention bottleneck module was used in the classification task for image feature and clinical feature fusion. We evaluated the performance of MTANet with CNN-based and transformer-based architectures across three imaging modalities for different tasks: CVC-ClinicDB dataset for polyp segmentation, ISIC-2018 dataset for skin lesion segmentation, and our private ultrasound dataset for liver tumor segmentation and classification. Our proposed model outperformed state-of-the-art models on all three datasets and was superior to all 25 radiologists for liver tumor diagnosis.
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Choi JH, Lee J, Lee SH, Lee S, Moon AS, Cho SH, Kim JS, Cho IR, Paik WH, Ryu JK, Kim YT. Analysis of ultrasonographic images using a deep learning-based model as ancillary diagnostic tool for diagnosing gallbladder polyps. Dig Liver Dis 2023; 55:1705-1711. [PMID: 37407319 DOI: 10.1016/j.dld.2023.06.023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/14/2023] [Revised: 06/05/2023] [Accepted: 06/19/2023] [Indexed: 07/07/2023]
Abstract
BACKGROUND Accurately diagnosing gallbladder polyps (GBPs) is important to avoid misdiagnosis and overtreatment. AIMS To evaluate the efficacy of a deep learning model and the accuracy of a computer-aided diagnosis by physicians for diagnosing GBPs. METHODS This retrospective cohort study was conducted from January 2006 to September 2021, and 3,754 images from 263 patients were analyzed. The outcome of this study was the efficacy of the developed deep learning model in discriminating neoplastic GBPs (NGBPs) from non-NGBPs and to evaluate the accuracy of a computer-aided diagnosis with that made by physicians. RESULTS The efficacy of discriminating NGBPs from non- NGBPs using deep learning was 0.944 (accuracy, 0.858; sensitivity, 0.856; specificity, 0.861). The accuracy of an unassisted diagnosis of GBP was 0.634, and that of a computer-aided diagnosis was 0.785 (p<0.001). There were no significant differences in the accuracy of a computer-aided diagnosis between experienced (0.835) and inexperienced (0.772) physicians (p = 0.251). A computer-aided diagnosis significantly assisted inexperienced physicians (0.772 vs. 0.614; p < 0.001) but not experienced physicians. CONCLUSIONS Deep learning-based models discriminate NGBPs from non- NGBPs with excellent accuracy. As ancillary diagnostic tools, they may assist inexperienced physicians in improving their diagnostic accuracy.
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Affiliation(s)
- Jin Ho Choi
- Division of Gastroenterology, Department of Medicine, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Korea
| | - Jaesung Lee
- Department of Artificial Intelligence, Chung-Ang University, 221, Heukseok-Dong, Dongjak-Gu, Seoul, Korea
| | - Sang Hyub Lee
- Department of Internal Medicine and Liver Research Institute, Seoul National University Hospital, Seoul National University College of Medicine, Seoul, Korea.
| | - Sanghyuk Lee
- Department of Artificial Intelligence, Chung-Ang University, 221, Heukseok-Dong, Dongjak-Gu, Seoul, Korea
| | - A-Seong Moon
- Department of Artificial Intelligence, Chung-Ang University, 221, Heukseok-Dong, Dongjak-Gu, Seoul, Korea
| | - Sung-Hyun Cho
- Department of Artificial Intelligence, Chung-Ang University, 221, Heukseok-Dong, Dongjak-Gu, Seoul, Korea
| | - Joo Seong Kim
- Department of Internal Medicine, Dongguk University College of Medicine, Dongguk University Ilsan Hospital, Goyang, Korea
| | - In Rae Cho
- Department of Internal Medicine and Liver Research Institute, Seoul National University Hospital, Seoul National University College of Medicine, Seoul, Korea
| | - Woo Hyun Paik
- Department of Internal Medicine and Liver Research Institute, Seoul National University Hospital, Seoul National University College of Medicine, Seoul, Korea
| | - Ji Kon Ryu
- Department of Internal Medicine and Liver Research Institute, Seoul National University Hospital, Seoul National University College of Medicine, Seoul, Korea
| | - Yong-Tae Kim
- Department of Internal Medicine and Liver Research Institute, Seoul National University Hospital, Seoul National University College of Medicine, Seoul, Korea
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Fu J, He B, Yang J, Liu J, Ouyang A, Wang Y. CDRNet: Cascaded dense residual network for grayscale and pseudocolor medical image fusion. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2023; 234:107506. [PMID: 37003041 DOI: 10.1016/j.cmpb.2023.107506] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/04/2022] [Revised: 03/18/2023] [Accepted: 03/22/2023] [Indexed: 06/19/2023]
Abstract
OBJECTIVE Multimodal medical fusion images have been widely used in clinical medicine, computer-aided diagnosis and other fields. However, the existing multimodal medical image fusion algorithms generally have shortcomings such as complex calculations, blurred details and poor adaptability. To solve this problem, we propose a cascaded dense residual network and use it for grayscale and pseudocolor medical image fusion. METHODS The cascaded dense residual network uses a multiscale dense network and a residual network as the basic network architecture, and a multilevel converged network is obtained through cascade. The cascaded dense residual network contains 3 networks, the first-level network inputs two images with different modalities to obtain a fused Image 1, the second-level network uses fused Image 1 as the input image to obtain fused Image 2 and the third-level network uses fused Image 2 as the input image to obtain fused Image 3. The multimodal medical image is trained through each level of the network, and the output fusion image is enhanced step-by-step. RESULTS As the number of networks increases, the fusion image becomes increasingly clearer. Through numerous fusion experiments, the fused images of the proposed algorithm have higher edge strength, richer details, and better performance in the objective indicators than the reference algorithms. CONCLUSION Compared with the reference algorithms, the proposed algorithm has better original information, higher edge strength, richer details and an improvement of the four objective SF, AG, MZ and EN indicator metrics.
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Affiliation(s)
- Jun Fu
- School of Information Engineering, Zunyi Normal University, Zunyi, Guizhou, 563006, China.
| | - Baiqing He
- Nanchang Institute of Technology, Nanchang, Jiangxi, 330044, China
| | - Jie Yang
- School of Information Engineering, Zunyi Normal University, Zunyi, Guizhou, 563006, China
| | - Jianpeng Liu
- School of Science, East China Jiaotong University, Nanchang, Jiangxi, 330013, China
| | - Aijia Ouyang
- School of Information Engineering, Zunyi Normal University, Zunyi, Guizhou, 563006, China
| | - Ya Wang
- School of Information Engineering, Zunyi Normal University, Zunyi, Guizhou, 563006, China
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Basu S, Gupta M, Rana P, Gupta P, Arora C. RadFormer: Transformers with global-local attention for interpretable and accurate Gallbladder Cancer detection. Med Image Anal 2023; 83:102676. [PMID: 36455424 DOI: 10.1016/j.media.2022.102676] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2021] [Revised: 09/17/2022] [Accepted: 10/27/2022] [Indexed: 11/21/2022]
Abstract
We propose a novel deep neural network architecture to learn interpretable representation for medical image analysis. Our architecture generates a global attention for region of interest, and then learns bag of words style deep feature embeddings with local attention. The global, and local feature maps are combined using a contemporary transformer architecture for highly accurate Gallbladder Cancer (GBC) detection from Ultrasound (USG) images. Our experiments indicate that the detection accuracy of our model beats even human radiologists, and advocates its use as the second reader for GBC diagnosis. Bag of words embeddings allow our model to be probed for generating interpretable explanations for GBC detection consistent with the ones reported in medical literature. We show that the proposed model not only helps understand decisions of neural network models but also aids in discovery of new visual features relevant to the diagnosis of GBC. Source-code is available at https://github.com/sbasu276/RadFormer.
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Affiliation(s)
- Soumen Basu
- Department of Computer Science, Indian Institute of Technology Delhi, New Delhi, India.
| | - Mayank Gupta
- Department of Computer Science, Indian Institute of Technology Delhi, New Delhi, India
| | - Pratyaksha Rana
- Department of Radiodiagnosis and Imaging, Postgraduate Institute of Medical Education & Research, Chandigarh, India
| | - Pankaj Gupta
- Department of Radiodiagnosis and Imaging, Postgraduate Institute of Medical Education & Research, Chandigarh, India
| | - Chetan Arora
- Department of Computer Science, Indian Institute of Technology Delhi, New Delhi, India
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Jenssen C, Lorentzen T, Dietrich CF, Lee JY, Chaubal N, Choi BI, Rosenberg J, Gutt C, Nolsøe CP. Incidental Findings of Gallbladder and Bile Ducts-Management Strategies: General Aspects, Gallbladder Polyps and Gallbladder Wall Thickening-A World Federation of Ultrasound in Medicine and Biology (WFUMB) Position Paper. ULTRASOUND IN MEDICINE & BIOLOGY 2022; 48:2355-2378. [PMID: 36058799 DOI: 10.1016/j.ultrasmedbio.2022.06.016] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2021] [Revised: 06/02/2022] [Accepted: 06/20/2022] [Indexed: 06/15/2023]
Abstract
The World Federation of Ultrasound in Medicine and Biology (WFUMB) is addressing the issue of incidental findings with a series of position papers to give advice on characterization and management. The biliary system (gallbladder and biliary tree) is the third most frequent site for incidental findings. This first part of the position paper on incidental findings of the biliary system is related to general aspects, gallbladder polyps and other incidental findings of the gallbladder wall. Available evidence on prevalence, diagnostic work-up, malignancy risk, follow-up and treatment is summarized with a special focus on ultrasound techniques. Multiparametric ultrasound features of gallbladder polyps and other incidentally detected gallbladder wall pathologies are described, and their inclusion in assessment of malignancy risk and decision- making on further management is suggested.
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Affiliation(s)
- Christian Jenssen
- Department of Internal Medicine, Krankenhaus Märkisch Oderland GmbH, Strausberg/Wriezen, Germany; Brandenburg Institute for Clinical Ultrasound (BICUS) at Medical University Brandenburg "Theodor Fontane", Neuruppin, Germany
| | - Torben Lorentzen
- Ultrasound Section, Division of Surgery, Department of Gastroenterology, Herlev Hospital, University of Copenhagen, Herlev, Denmark
| | - Christoph F Dietrich
- Department Allgemeine Innere Medizin (DAIM), Kliniken Hirslanden Beau Site, Salem und Permancence, Bern, Switzerland.
| | - Jae Young Lee
- Department of Radiology, Medical Research Center, Seoul National University, College of Medicine, Seoul, Korea
| | - Nitin Chaubal
- Thane Ultrasound Centre, Jaslok Hospital and Research Centre, Mumbai, India
| | - Buyng Ihn Choi
- Department of Radiology, Medical Research Center, Seoul National University, College of Medicine, Seoul, Korea
| | - Jacob Rosenberg
- Department of Surgery, Herlev Hospital, University of Copenhagen, Herlev, Denmark
| | - Carsten Gutt
- Department of Surgery, Klinikum Memmingen, Memmingen, Germany
| | - Christian P Nolsøe
- Center for Surgical Ultrasound, Department of Surgery, Zealand University Hospital, Køge, Denmark; Copenhagen Academy for Medical Education and Simulation (CAMES), University of Copenhagen, Copenhagen, Denmark
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Song D, Zhang Z, Li W, Yuan L, Zhang W. Judgment of benign and early malignant colorectal tumors from ultrasound images with deep multi-View fusion. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2022; 215:106634. [PMID: 35081497 DOI: 10.1016/j.cmpb.2022.106634] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2021] [Revised: 11/28/2021] [Accepted: 01/11/2022] [Indexed: 06/14/2023]
Abstract
BACKGROUND AND OBJECTIVE Colorectal cancer (CRC) is currently one of the main cancers world-wide, with a high incidence in the elderly. In the diagnosis of CRC, endorectal ultrasound plays an important role in judging benign and early malignant tumors. However, malignant tumors in the early-stage are not easy to identify visually and experts usually seek help from multi-view images, which increases the workload and also exists a certain probability of misdiagnosis. In recent years, with the widespread use of deep learning methods in the analysis of medical images, it becomes necessary to design an effective computer-aided diagnosis (CAD) system of CRC based on multi-view endorectal ultrasound images. METHOD In this study, we proposed a CAD system for judging benign and early malignant colorectal tumors, and constructed the first multi-view ultrasound image dataset of CRC to validate our algorithm. Our system is an end-to-end model based on a deep neural network (DNN) which includes a feature extraction module based on dense blocks, a multi-view fusion module, and a Multi-Layer Perception-based classifier. A center loss was used for the first time in CAD tasks, to optimize our model. RESULT On the constructed dataset, the proposed system surpasses expert diagnosis in accuracy, sensitivity, specificity, and F1-score. Compared with the popular deep classification networks and other CAD methods, the algorithm has reached the best performance. Comparative experiments using different feature extraction methods, different view fusion strategies, and different classifiers verify the effectiveness of each part of the algorithm. CONCLUSION We propose a CAD system for judging benign and early malignant colorectal tumors based on DNN, which combines information of ultrasound images from different views for comprehension. On the first CRC multi-view ultrasound image dataset which we constructed, our method outperforms expert diagnosis results and all other methods, and the effectiveness of each part of the system has been verified. Our system has application value in future medical practice on early diagnosis of CRC.
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Affiliation(s)
- Dan Song
- School of Electrical and Information Engineering, Tianjin University, Tianjin 300072, China
| | - Zheqi Zhang
- School of Electrical and Information Engineering, Tianjin University, Tianjin 300072, China
| | - Wenhui Li
- School of Electrical and Information Engineering, Tianjin University, Tianjin 300072, China.
| | - Lijun Yuan
- Department of Colorectal Surgery, Tianjin Union Medical Center, Tianjin 300121, China; Tianjin Institute of Coloproctology, Tianjin 300121, China.
| | - Wenshu Zhang
- EUREKA Robotics Centre, School of Technologies, Cardiff Metropolitan University, Cardiff, Wales, United Kingdom
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Wang S, Yin Y, Wang D, Lv Z, Wang Y, Jin Y. An interpretable deep neural network for colorectal polyp diagnosis under colonoscopy. Knowl Based Syst 2021. [DOI: 10.1016/j.knosys.2021.107568] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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12
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Guo X, Li S, Zhang L, Wang Y, Zhang L, Liu Z, Guo J, Du Y. A novel Joint-Net model for recognizing small-bowel polyp images. MINIM INVASIV THER 2021; 31:712-719. [PMID: 34730070 DOI: 10.1080/13645706.2021.1980402] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Abstract
INTRODUCTION To automatically recognize polyps of enteroscopy images and avoid pathological change, a novel Joint-Net has been proposed. MATERIAL AND METHODS The left half of the Joint-Net is constructed by transfer learning VGG16 and its right half is deepened based on the U-Net. In the previous two skip connections, a 3 × 3 convolution layer is added and the original two convolutions are replaced by the identity blocks. To connect the left and the right half part, the asymmetric convolution layer is used. In the output, the loophole-like structure is used. RESULTS The enteroscopy images were obtained in Changhai Hospital of Shanghai. The mean values of Dice and intersection over union were 90.05% and 82.71%. The classification accuracy of normal images and polyp images was 93.50%. CONCLUSIONS The experiments show that the Joint-Net can segment and recognize the polyps successfully.
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Affiliation(s)
- Xudong Guo
- School of Medical Instrument and Food Engineering, University of Shanghai for Science and Technology, Shanghai, China
| | - Shengnan Li
- School of Medical Instrument and Food Engineering, University of Shanghai for Science and Technology, Shanghai, China
| | - Linqi Zhang
- School of Medical Instrument and Food Engineering, University of Shanghai for Science and Technology, Shanghai, China
| | - Yuxin Wang
- Department of Gastroenterology, Changhai Hospital, Naval Medical University, Shanghai, China
| | - Lulu Zhang
- School of Medical Instrument and Food Engineering, University of Shanghai for Science and Technology, Shanghai, China
| | - Zhang Liu
- School of Medical Instrument and Food Engineering, University of Shanghai for Science and Technology, Shanghai, China
| | - Jiefang Guo
- Department of Gastroenterology, Changhai Hospital, Naval Medical University, Shanghai, China
| | - Yiqi Du
- Department of Gastroenterology, Changhai Hospital, Naval Medical University, Shanghai, China
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Kröner PT, Engels MML, Glicksberg BS, Johnson KW, Mzaik O, van Hooft JE, Wallace MB, El-Serag HB, Krittanawong C. Artificial intelligence in gastroenterology: A state-of-the-art review. World J Gastroenterol 2021; 27:6794-6824. [PMID: 34790008 PMCID: PMC8567482 DOI: 10.3748/wjg.v27.i40.6794] [Citation(s) in RCA: 52] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/11/2021] [Revised: 06/15/2021] [Accepted: 09/16/2021] [Indexed: 02/06/2023] Open
Abstract
The development of artificial intelligence (AI) has increased dramatically in the last 20 years, with clinical applications progressively being explored for most of the medical specialties. The field of gastroenterology and hepatology, substantially reliant on vast amounts of imaging studies, is not an exception. The clinical applications of AI systems in this field include the identification of premalignant or malignant lesions (e.g., identification of dysplasia or esophageal adenocarcinoma in Barrett’s esophagus, pancreatic malignancies), detection of lesions (e.g., polyp identification and classification, small-bowel bleeding lesion on capsule endoscopy, pancreatic cystic lesions), development of objective scoring systems for risk stratification, predicting disease prognosis or treatment response [e.g., determining survival in patients post-resection of hepatocellular carcinoma), determining which patients with inflammatory bowel disease (IBD) will benefit from biologic therapy], or evaluation of metrics such as bowel preparation score or quality of endoscopic examination. The objective of this comprehensive review is to analyze the available AI-related studies pertaining to the entirety of the gastrointestinal tract, including the upper, middle and lower tracts; IBD; the hepatobiliary system; and the pancreas, discussing the findings and clinical applications, as well as outlining the current limitations and future directions in this field.
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Affiliation(s)
- Paul T Kröner
- Division of Gastroenterology and Hepatology, Mayo Clinic, Jacksonville, FL 32224, United States
| | - Megan ML Engels
- Division of Gastroenterology and Hepatology, Mayo Clinic, Jacksonville, FL 32224, United States
- Cancer Center Amsterdam, Department of Gastroenterology and Hepatology, Amsterdam UMC, Location AMC, Amsterdam 1105, The Netherlands
| | - Benjamin S Glicksberg
- The Hasso Plattner Institute for Digital Health, Icahn School of Medicine at Mount Sinai, New York, NY 10029, United States
| | - Kipp W Johnson
- The Hasso Plattner Institute for Digital Health, Icahn School of Medicine at Mount Sinai, New York, NY 10029, United States
| | - Obaie Mzaik
- Division of Gastroenterology and Hepatology, Mayo Clinic, Jacksonville, FL 32224, United States
| | - Jeanin E van Hooft
- Department of Gastroenterology and Hepatology, Leiden University Medical Center, Amsterdam 2300, The Netherlands
| | - Michael B Wallace
- Division of Gastroenterology and Hepatology, Mayo Clinic, Jacksonville, FL 32224, United States
- Division of Gastroenterology and Hepatology, Sheikh Shakhbout Medical City, Abu Dhabi 11001, United Arab Emirates
| | - Hashem B El-Serag
- Section of Gastroenterology and Hepatology, Michael E. DeBakey VA Medical Center and Baylor College of Medicine, Houston, TX 77030, United States
- Section of Health Services Research, Michael E. DeBakey VA Medical Center and Baylor College of Medicine, Houston, TX 77030, United States
| | - Chayakrit Krittanawong
- Section of Health Services Research, Michael E. DeBakey VA Medical Center and Baylor College of Medicine, Houston, TX 77030, United States
- Section of Cardiology, Michael E. DeBakey VA Medical Center, Houston, TX 77030, United States
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