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For: Wang ZK, Yang YS. Upper gastrointestinal microbiota and digestive diseases. World J Gastroenterol 2013; 19(10): 1541-1550 [PMID: 23539678 DOI: 10.3748/wjg.v19.i10.1541]
URL: https://www.wjgnet.com/1007-9327/full/v19/i10/1541.htm
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Sahar Al‐Haddad, Hala El‐Zimaity, Sara Hafezi‐Bakhtiari, Shanmugarajah Rajendra, Catherine J. Streutker, Rajkumar Vajpeyi, Bin Wang. Infection and esophageal cancerAnnals of the New York Academy of Sciences 2014; 1325(1): 187 doi: 10.1111/nyas.12530
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Valentine Langlois, Natacha Joyon, Rita Bou Farah, Elisabeth Chachaty, Jean-Yves Scoazec. Pullulation bactérienne gastrique : une observation histologique inhabituelle, à ne pas méconnaîtreAnnales de Pathologie 2021; 41(2): 196 doi: 10.1016/j.annpat.2020.11.005
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R. G. Lopes, S. B. R. do Prado, J. P. Fabi. Nutrition and Cancer Prevention2019; : 261 doi: 10.1039/9781788016506-00261
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Agnieszka Sroka-Oleksiak, Agata Młodzińska, Małgorzata Bulanda, Dominika Salamon, Piotr Major, Maciej Stanek, Tomasz Gosiewski. Metagenomic Analysis of Duodenal Microbiota Reveals a Potential Biomarker of Dysbiosis in the Course of Obesity and Type 2 Diabetes: A Pilot StudyJournal of Clinical Medicine 2020; 9(2): 369 doi: 10.3390/jcm9020369
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Alberto Barchi, Luca Massimino, Francesco Vito Mandarino, Edoardo Vespa, Emanuele Sinagra, Omar Almolla, Sandro Passaretti, Ernesto Fasulo, Tommaso Lorenzo Parigi, Stefania Cagliani, Salvatore Spanò, Federica Ungaro, Silvio Danese. Microbiota profiling in esophageal diseases: Novel insights into molecular staining and clinical outcomesComputational and Structural Biotechnology Journal 2024; 23: 626 doi: 10.1016/j.csbj.2023.12.026
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Youenn Alexandre, Rozenn Le Berre, Georges Barbier, Gwenaelle Le Blay. Screening of Lactobacillus spp. for the prevention of Pseudomonas aeruginosa pulmonary infectionsBMC Microbiology 2014; 14(1) doi: 10.1186/1471-2180-14-107
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Emeran A. Mayer, Tor Savidge, Robert J. Shulman. Brain–Gut Microbiome Interactions and Functional Bowel DisordersGastroenterology 2014; 146(6): 1500 doi: 10.1053/j.gastro.2014.02.037
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Lei Cao, Jun Yu. Effect of <b><i>Helicobacter pylori</i></b> Infection on the Composition of Gastric Microbiota in the Development of Gastric CancerGastrointestinal Tumors 2015; 2(1): 14 doi: 10.1159/000380893
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Barath Udayasuryan, Daniel J. Slade, Scott S. Verbridge. Nanotechnology and Microfluidics2020; : 281 doi: 10.1002/9783527818341.ch9
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B. I. Aslanov, T. M. Chirkina, Yu. V. Kokovina, E. A. Antonova, A. V. Tiselko, O. V. Shirai, O. K. Ignatova. Pathological changes in the gastrointestinal tract in patients with diabetes mellitusMedical alphabet 2023; (35): 29 doi: 10.33667/2078-5631-2022-35-29-36
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Emanuel Dias-Jácome, Diogo Libânio, Marta Borges-Canha, Ana Galaghar, Pedro Pimentel-Nunes. Gastric microbiota and carcinogenesis: the role of non-Helicobacter pylori bacteria - A systematic reviewRevista Española de Enfermedades Digestivas 2016; 108 doi: 10.17235/reed.2016.4261/2016
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Esther Jiménez, Borja Sánchez, Annarita Farina, Abelardo Margolles, Juan M. Rodríguez. Characterization of the bile and gall bladder microbiota of healthy pigsMicrobiologyOpen 2014; 3(6): 937 doi: 10.1002/mbo3.218
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Giovanni Sarnelli, Alessandra D’Alessandro, Raf Bisschops. Revisiting Barrett's Esophagus2019; : 125 doi: 10.1007/978-3-319-92093-1_12
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Said R. Bogatyrev, Justin C. Rolando, Rustem F. Ismagilov. Self-reinoculation with fecal flora changes microbiota density and composition leading to an altered bile-acid profile in the mouse small intestineMicrobiome 2020; 8(1) doi: 10.1186/s40168-020-0785-4
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Nurdan Tözün, Eser Vardareli. Gut Microbiome and Gastrointestinal CancerJournal of Clinical Gastroenterology 2016; 50(Supplement 2): S191 doi: 10.1097/MCG.0000000000000714
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Guodong Wang. Advancement of the relationship between esophageal microorganisms and esophageal diseasesGastroenterology & Endoscopy 2024; 2(3): 112 doi: 10.1016/j.gande.2024.07.001
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Ying Yu, Feng Gao, Xue Chen, Shuai Zheng, Jie Zhang. Changes in the distal esophageal microbiota in Chinese patients with reflux esophagitisJournal of Digestive Diseases 2019; 20(1): 18 doi: 10.1111/1751-2980.12692
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Snehasikta Swarnakar, Anirban Roy, Satyabrata Ghosh, Rajib Majumder, Sandip Paul. Pathophysiological Aspects of Proteases2017; : 489 doi: 10.1007/978-981-10-6141-7_19
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Naiara Orrego-Lagarón, Anna Vallverdú-Queralt, Miriam Martínez-Huélamo, Rosa M. Lamuela-Raventos, Elvira Escribano-Ferrer. Metabolic profile of naringenin in the stomach and colon using liquid chromatography/electrospray ionization linear ion trap quadrupole-Orbitrap-mass spectrometry (LC-ESI-LTQ-Orbitrap-MS) and LC-ESI-MS/MSJournal of Pharmaceutical and Biomedical Analysis 2016; 120: 38 doi: 10.1016/j.jpba.2015.10.040
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C. Schulz, L. Macke, F. Frost, S. Suerbaum, P. Malfertheiner, J. Mayerle. Das Mikrobiom des infizierten Magens und DuodenumsDer Gastroenterologe 2018; 13(2): 106 doi: 10.1007/s11377-018-0233-1
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Andrés Suárez‐Jaramillo, Manuel E. Baldeón, Belén Prado, Marco Fornasini, Henry Cohen, Nancy Flores, Iván Salvador, Oswaldo Cargua, José Realpe, Paul A. Cárdenas. Duodenal microbiome in patients with or without Helicobacter pylori infectionHelicobacter 2020; 25(6) doi: 10.1111/hel.12753
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Zikai Wang, Rongrong Ren, Yunsheng Yang. The Microbiome in Health and DiseaseProgress in Molecular Biology and Translational Science 2020; 171: 195 doi: 10.1016/bs.pmbts.2020.03.004
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Vincenzo Di Pilato, Giancarlo Freschi, Maria Novella Ringressi, Lucia Pallecchi, Gian Maria Rossolini, Paolo Bechi. The esophageal microbiota in health and diseaseAnnals of the New York Academy of Sciences 2016; 1381(1): 21 doi: 10.1111/nyas.13127
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Changcheng Guo, Fang Liu, Li Zhu, Fangcao Wu, Guzhen Cui, Yan Xiong, Qiong Wang, Lin Yin, Caixia Wang, Huan Wang, Xiaojuan Wu, Zhengrong Zhang, Zhenghong Chen. Analysis of culturable microbiota present in the stomach of children with gastric symptomsBrazilian Journal of Microbiology 2019; 50(1): 107 doi: 10.1007/s42770-018-0030-5
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Genomics and epidemiology for gastric adenocarcinomasApplied Cancer Research 2017; 37(1) doi: 10.1186/s41241-017-0011-2
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Onyinye I. Iweala, Cathryn R. Nagler. The Microbiome and Food AllergyAnnual Review of Immunology 2019; 37(1): 377 doi: 10.1146/annurev-immunol-042718-041621
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Yukie Kohata, Kenichi Nakahara, Tetsuya Tanigawa, Hirokazu Yamagami, Masatsugu Shiba, Toshio Watanabe, Kazunari Tominaga, Yasuhiro Fujiwara, Tetsuo Arakawa. Rebamipide Alters the Esophageal Microbiome and Reduces the Incidence of Barrett’s Esophagus in a Rat ModelDigestive Diseases and Sciences 2015; 60(9): 2654 doi: 10.1007/s10620-015-3662-4
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Farzaneh Fakharian, Behnoush Asgari, Ali Nabavi-Rad, Amir Sadeghi, Neda Soleimani, Abbas Yadegar, Mohammad Reza Zali. The interplay between Helicobacter pylori and the gut microbiota: An emerging driver influencing the immune system homeostasis and gastric carcinogenesisFrontiers in Cellular and Infection Microbiology 2022; 12 doi: 10.3389/fcimb.2022.953718
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Tomasz Stefura, Jakub Rusinek, Maciej Zając, Barbara Zapała, Tomasz Gosiewski, Agnieszka Sroka-Oleksiak, Dominika Salamon, Michał Pędziwiatr, Piotr Major. Duodenal microbiota and weight-loss following sleeve gastrectomy and Roux-en-Y gastric bypass – a pilot studyBMC Surgery 2023; 23(1) doi: 10.1186/s12893-023-02076-6
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Claire Duvallet, Sean M. Gibbons, Thomas Gurry, Rafael A. Irizarry, Eric J. Alm. Meta-analysis of gut microbiome studies identifies disease-specific and shared responsesNature Communications 2017; 8(1) doi: 10.1038/s41467-017-01973-8
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Shi-Lian Li, Shao-Qin Zheng, Ying-Zi Tang, Hui-Min Liu, Qing Mao. Progress in understanding of relationship between duodenal mucosal microecology and hepatitis B virus related acute-on-chronic liver failureWorld Chinese Journal of Digestology 2022; 30(24): 1074 doi: 10.11569/wcjd.v30.i24.1074
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Xueqing Duan, Xin Xie, Chen Zhu, Zhixuan Duan, Rui Chen, Jun Xu, Qi Zhang, Qi Yu, Weiyi Tian, Dan Su. Sex Difference of Effect of Sophora flavescens on Gut Microbiota in RatsEvidence-Based Complementary and Alternative Medicine 2022; 2022: 1 doi: 10.1155/2022/4552904
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Yalda Khosravi, Yakhya Dieye, Mun Fai Loke, Khean Lee Goh, Jamuna Vadivelu, Holger Brüggemann. Streptococcus mitis Induces Conversion of Helicobacter pylori to Coccoid Cells during Co-Culture In VitroPLoS ONE 2014; 9(11): e112214 doi: 10.1371/journal.pone.0112214
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Girish Kulkarni, Kushal Gohil, Vatsala Misra, Arjun L. Kakrani, Sri P. Misra, Milind Patole, Yogesh Shouche, Mahesh Dharne. Multilocus sequence typing of Ochrobactrum spp. isolated from gastric nicheJournal of Infection and Public Health 2017; 10(2): 201 doi: 10.1016/j.jiph.2016.04.013
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Sukran Kose, Muge Ozguler. Risk Factors and Therapy of Esophagus Cancer2024; : 539 doi: 10.1007/978-3-031-47024-0_34
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Gerardo Nardone, Debora Compare. The human gastric microbiota: Is it time to rethink the pathogenesis of stomach diseases?United European Gastroenterology Journal 2015; 3(3): 255 doi: 10.1177/2050640614566846
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Harry Cheuk-Hay Lau. Microbiome in Gastrointestinal Cancer2023; : 5 doi: 10.1007/978-981-19-4492-5_2
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Zhitang Lyu, Tingting Yu, Lichao Zhang, Xiaona Xu, Yijun Zhang, Jihong Li, Zhirong Li, Wei Zhang, Senlin Hou. Analysis of the relationship between bile duct and duodenal microbiota reveals that potential dysbacteriosis is the main cause of primary common bile duct stonesSynthetic and Systems Biotechnology 2021; 6(4): 414 doi: 10.1016/j.synbio.2021.11.002
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Roberto Marques Ribeiro, Marcela de Souza-Basqueira, Léa Campos de Oliveira, Flavia Cristina Salles, Natalia Bueno Pereira, Ester Cerdeira Sabino. An alternative storage method for characterization of the intestinal microbiota through next generation sequencingRevista do Instituto de Medicina Tropical de São Paulo 2018; 60(0) doi: 10.1590/s1678-9946201860077
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Eamonn M.M. Quigley. Small intestinal bacterial overgrowthCurrent Opinion in Gastroenterology 2014; 30(2): 141 doi: 10.1097/MOG.0000000000000040
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Alfred King-yin Lam. Esophageal Cancer2015; : 25 doi: 10.1007/978-3-319-20068-2_2
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Eun Jin Kim, Gwang Ho Baik. Review on Gastric Mucosal Microbiota Profiling Differences in Patients with Chronic Gastritis, Intestinal Metaplasia, and Gastric CancerThe Korean Journal of Gastroenterology 2014; 64(6): 390 doi: 10.4166/kjg.2014.64.6.390
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Meabh Beatty, Jasenka Guduric-Fuchs, Eoin Brown, Stephen Bridgett, Usha Chakravarthy, Ruth Esther Hogg, David Arthur Simpson. Small RNAs from plants, bacteria and fungi within the order Hypocreales are ubiquitous in human plasmaBMC Genomics 2014; 15(1) doi: 10.1186/1471-2164-15-933
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Paul Giacomin, Martha Zakrzewski, John Croese, Xiaopei Su, Javier Sotillo, Leisa McCann, Severine Navarro, Makedonka Mitreva, Lutz Krause, Alex Loukas, Cinzia Cantacessi. Experimental hookworm infection and escalating gluten challenges are associated with increased microbial richness in celiac subjectsScientific Reports 2015; 5(1) doi: 10.1038/srep13797
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Urszula Krupa-Kozak, Natalia Drabińska. Comprehensive Gut Microbiota2022; : 243 doi: 10.1016/B978-0-12-819265-8.00036-X
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Duygu Ağagündüz, Ermelinda Cocozza, Özge Cemali, Ayşe Derya Bayazıt, Maria Francesca Nanì, Ida Cerqua, Floriana Morgillo, Suna Karadeniz Saygılı, Roberto Berni Canani, Paola Amero, Raffaele Capasso. Understanding the role of the gut microbiome in gastrointestinal cancer: A reviewFrontiers in Pharmacology 2023; 14 doi: 10.3389/fphar.2023.1130562
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Indranil Chattopadhyay, Rohit Gundamaraju, Ashwin Rajeev. Diversification and deleterious role of microbiome in gastric cancerCancer Reports 2023; 6(11) doi: 10.1002/cnr2.1878
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Iain A. Brownlee. Reflux Aspiration and Lung Disease2018; : 29 doi: 10.1007/978-3-319-90525-9_3
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Mario Del Piano, Michela Pagliarulo, Roberto Tari, Stefania Carmagnola, Marco Balzarini, Paola Lorenzini, Marco Pane. Correlation Between Chronic Treatment With Proton Pump Inhibitors and Bacterial Overgrowth in the StomachJournal of Clinical Gastroenterology 2014; 48(Supplement 1): S40 doi: 10.1097/MCG.0000000000000256
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Csaba Kerepesi, Dániel Bánky, Vince Grolmusz. AmphoraNet: The webserver implementation of the AMPHORA2 metagenomic workflow suiteGene 2014; 533(2): 538 doi: 10.1016/j.gene.2013.10.015
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Tereza Deissová, Martina Zapletalová, Lumír Kunovský, Radek Kroupa, Tomáš Grolich, Zdeněk Kala, Petra Bořilová Linhartová, Jan Lochman. 16S rRNA gene primer choice impacts off-target amplification in human gastrointestinal tract biopsies and microbiome profilingScientific Reports 2023; 13(1) doi: 10.1038/s41598-023-39575-8
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Roland Wirth, Nikolett Bódi, Gergely Maróti, Mária Bagyánszki, Petra Talapka, Éva Fekete, Zoltán Bagi, Kornél L. Kovács, Markus M. Heimesaat. Regionally Distinct Alterations in the Composition of the Gut Microbiota in Rats with Streptozotocin-Induced DiabetesPLoS ONE 2014; 9(12): e110440 doi: 10.1371/journal.pone.0110440
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Shan Li, Gwenny M. Fuhler, Nahush BN, Tony Jose, Marco J. Bruno, Maikel P. Peppelenbosch, Sergey R. Konstantinov. Pancreatic cyst fluid harbors a unique microbiomeMicrobiome 2017; 5(1) doi: 10.1186/s40168-017-0363-6
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D. Rose Ewald, Susan C.J. Sumner. Human microbiota, blood group antigens, and diseaseWIREs Systems Biology and Medicine 2018; 10(3) doi: 10.1002/wsbm.1413
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Incheol Seo, Bijay Kumar Jha, Seong-Il Suh, Min-Ho Suh, Won-Ki Baek. Microbial Profile of the Stomach: Comparison between Normal Mucosa and Cancer Tissue in the Same PatientJournal of Bacteriology and Virology 2014; 44(2): 162 doi: 10.4167/jbv.2014.44.2.162
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Patrycja Cichońska, Ewa Kowalska, Małgorzata Ziarno. The Survival of Psychobiotics in Fermented Food and the Gastrointestinal Tract: A ReviewMicroorganisms 2023; 11(4): 996 doi: 10.3390/microorganisms11040996
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Wenjia Xu, Zhongshun Liu, Qunchao Bao, Zhikang Qian. Viruses, Other Pathogenic Microorganisms and Esophageal CancerGastrointestinal Tumors 2015; 2(1): 2 doi: 10.1159/000380897
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Wang Zikai, Yang Yunsheng. Encyclopedia of Gastroenterology2020; : 591 doi: 10.1016/B978-0-12-801238-3.62158-X
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E. Nistal, A. Caminero, A.R. Herrán, J. Pérez-Andres, S. Vivas, J.M. Ruiz de Morales, L.E. Sáenz de Miera, J. Casqueiro. Study of duodenal bacterial communities by 16S rRNA gene analysis in adults with active celiac disease vs non-celiac disease controlsJournal of Applied Microbiology 2016; 120(6): 1691 doi: 10.1111/jam.13111
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