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For: Swidsinski A, Loening-Baucke V, Lochs H, Hale LP. Spatial organization of bacterial flora in normal and inflamed intestine: A fluorescence in situ hybridization study in mice. World J Gastroenterol 2005; 11(8): 1131-1140 [PMID: 15754393 DOI: 10.3748/wjg.v11.i8.1131]
URL: https://www.wjgnet.com/1007-9327/full/v11/i8/1131.htm
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Number Citing Articles
1
Lena Öhman, Hans Törnblom, Magnus Simrén. Crosstalk at the mucosal border: importance of the gut microenvironment in IBS. Nature Reviews Gastroenterology & Hepatology 2015; 12(1) doi: 10.1038/nrgastro.2014.200
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Lipi Poojara, Dhaval K. Acharya, Jalpa Patel, Rakesh M. Rawal. Microbiome-Gut-Brain Axis. 2022;  doi: 10.1007/978-981-16-1626-6_8
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Tanja Petnicki-Ocwieja, Tomas Hrncir, Yuen-Joyce Liu, Amlan Biswas, Tomas Hudcovic, Helena Tlaskalova-Hogenova, Koichi S. Kobayashi. Nod2 is required for the regulation of commensal microbiota in the intestine. Proceedings of the National Academy of Sciences 2009; 106(37) doi: 10.1073/pnas.0907722106
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Annalisa Ciabattini, Raffaela Olivieri, Elisa Lazzeri, Donata Medaglini. Role of the Microbiota in the Modulation of Vaccine Immune Responses. Frontiers in Microbiology 2019; 10 doi: 10.3389/fmicb.2019.01305
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Bärbel Jung, Peter Matthiessen, Kenneth Smedh, Erik Nilsson, Ulrika Ransjö, Lars Påhlman. Mechanical bowel preparation does not affect the intramucosal bacterial colony count. International Journal of Colorectal Disease 2010; 25(4) doi: 10.1007/s00384-009-0863-3
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Gráinne Lennon, Áine Balfe, Helen Earley, Liam A Devane, Aonghus Lavelle, Desmond C Winter, J Calvin Coffey, P Ronan O'Connell. Influences of the colonic microbiome on the mucous gel layer in ulcerative colitis. Gut Microbes 2014; 5(3) doi: 10.4161/gmic.28793
7
Tetyana V. Koval, Ivan V. Chopey, Mykhaylo M. Hechko, Artur V. Kurakh. NON-ALCOHOLIC FATTY LIVER DISEASE IN THE CONTEXT OF ALTERED GUT MICROBIOTA. Wiadomości Lekarskie 2021; 74(4) doi: 10.36740/WLek202104137
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Britta Lötstedt, Martin Stražar, Ramnik Xavier, Aviv Regev, Sanja Vickovic. Spatial host–microbiome sequencing reveals niches in the mouse gut. Nature Biotechnology 2024; 42(9) doi: 10.1038/s41587-023-01988-1
9
Navami Koyande, Madhusree Gangopadhyay, Shashidhar Thatikonda, Aravind Kumar Rengan. The role of gut microbiota in the development of colorectal cancer: a review. International Journal of Colorectal Disease 2022; 37(7) doi: 10.1007/s00384-022-04192-w
10
Anna M. Borowiec, Beate C. Sydora, Jason Doyle, Le Luo Guan, Thomas A. Churchill, Karen Madsen, Richard N. Fedorak. Small bowel fibrosis and systemic inflammatory response after ileocolonic anastomosis in IL-10 null mice. Journal of Surgical Research 2012; 178(1) doi: 10.1016/j.jss.2012.01.048
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Sarah Tomkovich, Christine M. Dejea, Kathryn Winglee, Julia L. Drewes, Liam Chung, Franck Housseau, Jillian L. Pope, Josee Gauthier, Xiaolun Sun, Marcus Mühlbauer, Xiuli Liu, Payam Fathi, Robert A. Anders, Sepideh Besharati, Ernesto Perez-Chanona, Ye Yang, Hua Ding, Xinqun Wu, Shaoguang Wu, James R. White, Raad Z. Gharaibeh, Anthony A. Fodor, Hao Wang, Drew M. Pardoll, Christian Jobin, Cynthia L. Sears. Human colon mucosal biofilms from healthy or colon cancer hosts are carcinogenic. Journal of Clinical Investigation 2019; 129(4) doi: 10.1172/JCI124196
12
Kellyanne Duncan, Kelly Carey-Ewend, Shipra Vaishnava. Spatial analysis of gut microbiome reveals a distinct ecological niche associated with the mucus layer. Gut Microbes 2021; 13(1) doi: 10.1080/19490976.2021.1874815
13
Amit H. Sachdev, Mark Pimentel. Antibiotics for Irritable Bowel Syndrome: Rationale and Current Evidence. Current Gastroenterology Reports 2012; 14(5) doi: 10.1007/s11894-012-0284-2
14
Rna-Based Regulation in Human Health and Disease. 2020;  doi: 10.1016/B978-0-12-817193-6.00005-4
15
Luis M. Bustos Fernandez, Juan S. Lasa, Fernando Man. Intestinal Microbiota. Journal of Clinical Gastroenterology 2014; 48(8) doi: 10.1097/MCG.0000000000000153
16
Jeremy Rothschild, Tianyi Ma, Joshua N. Milstein, Anton Zilman, Daniel Weissman. Spatial exclusion leads to “tug-of-war” ecological dynamics between competing species within microchannels. PLOS Computational Biology 2023; 19(12) doi: 10.1371/journal.pcbi.1010868
17
J. Landy, H. O. Al-Hassi, S. D. McLaughlin, S. C. Knight, P. J. Ciclitira, R. J. Nicholls, S. K. Clark, A. L. Hart. Etiology of pouchitis*. Inflammatory Bowel Diseases 2012; 18(6) doi: 10.1002/ibd.21911
18
Sujata Das, Charu Khanna, Shalini Singh, Shilpa Nandi, Reema Verma. Microbial Diversity, Interventions and Scope. 2020;  doi: 10.1007/978-981-15-4099-8_20
19
Alexander Swidsinski, Victoria Ung, Beate C. Sydora, Vera Loening-Baucke, Yvonne Doerffel, Hans Verstraelen, Richard N. Fedorak. Bacterial Overgrowth and Inflammation of Small Intestine After Carboxymethylcellulose Ingestion in Genetically Susceptible Mice. Inflammatory Bowel Diseases 2009; 15(3) doi: 10.1002/ibd.20763
20
Satyanagalakshmi Karri, Manohar Babu Vadela, Vijay A. K. B. Gundi. Human Microbiome in Health, Disease, and Therapy. 2023;  doi: 10.1007/978-981-99-5114-7_12
21
Brianna Swartwout, Xin M. Luo. Implications of Probiotics on the Maternal-Neonatal Interface: Gut Microbiota, Immunomodulation, and Autoimmunity. Frontiers in Immunology 2018; 9 doi: 10.3389/fimmu.2018.02840
22
Shaopu Wang, Alexandre Almeida, Dezhi Mu, Shuqin Zeng. Spatially resolved architecture of the human gut microbiome and its health implications. The Lancet Microbe 2026;  doi: 10.1016/j.lanmic.2026.101389
23
Ömrüm Aydin, Max Nieuwdorp, Victor Gerdes. The Gut Microbiome as a Target for the Treatment of Type 2 Diabetes. Current Diabetes Reports 2018; 18(8) doi: 10.1007/s11892-018-1020-6
24
Ulf Meyer-Hoffert, Mathias Hornef, Birgitta Henriques-Normark, Staffan Normark, Mats Andersson, Katrin Pütsep. Identification of heparin/heparan sulfate interacting protein as a major broad‐spectrum antimicrobial protein in lung and small intestine. The FASEB Journal 2008; 22(7) doi: 10.1096/fj.07-103440
25
Alexander Crits-Christoph, Haley Anne Hallowell, Kalia Koutouvalis, Jotham Suez. Good microbes, bad genes? The dissemination of antimicrobial resistance in the human microbiome. Gut Microbes 2022; 14(1) doi: 10.1080/19490976.2022.2055944
26
Min Wang, Hongyu Liu, Mingshu Huang, Yisheng Huang, Yue Ming, Weixing Chen, Yuanxin Chen, Zhengming Tang, Bo Jia. Immunomodulatory functions of microorganisms in tissue regenerative healing. Acta Biomaterialia 2023; 172 doi: 10.1016/j.actbio.2023.10.007
27
Preksha Gaur, Yesheswini Rajendran, Bhagyashree Srivastava, Manasvini Markandey, Vered Fishbain-Yoskovitz, Gayatree Mohapatra, Aamir Suhail, Shikha Chaudhary, Shaifali Tyagi, Subhash Chandra Yadav, Amit Kumar Pandey, Yifat Merbl, Avinash Bajaj, Vineet Ahuja, Chittur Srikanth. Rab7-dependent regulation of goblet cell protein CLCA1 modulates gastrointestinal homeostasis. eLife 2024; 12 doi: 10.7554/eLife.89776.3
28
Claire J Steves, Sarah Bird, Frances MK Williams, Tim D Spector. The Microbiome and Musculoskeletal Conditions of Aging: A Review of Evidence for Impact and Potential Therapeutics. Journal of Bone and Mineral Research 2016; 31(2) doi: 10.1002/jbmr.2765
29
Bailey C. E. Peck, Michael T. Shanahan, Ajeet P. Singh, Praveen Sethupathy. Gut Microbial Influences on the Mammalian Intestinal Stem Cell Niche. Stem Cells International 2017; 2017 doi: 10.1155/2017/5604727
30
Katherine L. Bryant, Christi Hansen, Erin E. Hecht. Fermentation technology as a driver of human brain expansion. Communications Biology 2023; 6(1) doi: 10.1038/s42003-023-05517-3
31
Maciej Chichlowski, Laura P. Hale. Bacterial-mucosal interactions in inflammatory bowel disease—an alliance gone bad. American Journal of Physiology-Gastrointestinal and Liver Physiology 2008; 295(6) doi: 10.1152/ajpgi.90516.2008
32
Marie Vétizou, Romain Daillère, Laurence Zitvogel. Microbiote intestinal et réponses aux thérapies anti-tumorales. médecine/sciences 2016; 32(11) doi: 10.1051/medsci/20163211013
33
D. Ozaki, R. Kubota, T. Maeno, M. Abdelhakim, N. Hitosugi. Association between gut microbiota, bone metabolism, and fracture risk in postmenopausal Japanese women. Osteoporosis International 2021; 32(1) doi: 10.1007/s00198-020-05728-y
34
Manfredi d’Afflitto, Advait Upadhyaya, Alicia Green, Madusha Peiris. Association Between Sex Hormone Levels and Gut Microbiota Composition and Diversity—A Systematic Review. Journal of Clinical Gastroenterology 2022; 56(5) doi: 10.1097/MCG.0000000000001676
35
Manan Bawa, Vivek A. Saraswat. Gut–Liver Axis: Role of Inflammasomes. Journal of Clinical and Experimental Hepatology 2013; 3(2) doi: 10.1016/j.jceh.2013.03.225
36
Gertrude O. Oppong, Glenn J. Rapsinski, Tiffanny N. Newman, Jessalyn H. Nishimori, Steven G. Biesecker, Çagla Tükel, J. B. Bliska. Epithelial Cells Augment Barrier Function via Activation of the Toll-Like Receptor 2/Phosphatidylinositol 3-Kinase Pathway upon Recognition of Salmonella enterica Serovar Typhimurium Curli Fibrils in the Gut. Infection and Immunity 2013; 81(2) doi: 10.1128/IAI.00453-12
37
Michael C. Abt, Charlie G. Buffie, Bože Sušac, Simone Becattini, Rebecca A. Carter, Ingrid Leiner, James W. Keith, David Artis, Lisa C. Osborne, Eric G. Pamer. TLR-7 activation enhances IL-22–mediated colonization resistance against vancomycin-resistant enterococcus. Science Translational Medicine 2016; 8(327) doi: 10.1126/scitranslmed.aad6663
38
Valery P. Kalinitchenko, Alla A. Okolelova, Elena E. Nefedieva, Galina S. Egorova, Tatiana M. Minkina, Vishnu D. Rajput, Michail G. Baryshev, Svetlana N. Sushkova, Saglara S. Mandzhieva, Larisa L. Sviridova, Igor Y. Podkovyrov, Veronika N. Kaplya. Biogeosystem Technique (BGT*) platform improves soil‐ecosystem services in dry terrain: A review. Soil Use and Management 2025; 41(1) doi: 10.1111/sum.70053
39
Inna Sekirov, Shannon L. Russell, L. Caetano M. Antunes, B. Brett Finlay. Gut Microbiota in Health and Disease. Physiological Reviews 2010; 90(3) doi: 10.1152/physrev.00045.2009
40
Michael Napolitano, Mihai Covasa. Microbiota Transplant in the Treatment of Obesity and Diabetes: Current and Future Perspectives. Frontiers in Microbiology 2020; 11 doi: 10.3389/fmicb.2020.590370
41
Gregory P. Donaldson, S. Melanie Lee, Sarkis K. Mazmanian. Gut biogeography of the bacterial microbiota. Nature Reviews Microbiology 2016; 14(1) doi: 10.1038/nrmicro3552
42
Ayesha Shah, Nicholas J. Talley, Gerald Holtmann. Current and Future Approaches for Diagnosing Small Intestinal Dysbiosis in Patients With Symptoms of Functional Dyspepsia. Frontiers in Neuroscience 2022; 16 doi: 10.3389/fnins.2022.830356
43
Hajara Aslam, Fiona Collier, Jessica A Davis, Thomas P Quinn, Martin O'Hely, Julie A Pasco, Felice N Jacka, Amy Loughman. Gut Microbiome Diversity and Composition Are Associated with Habitual Dairy Intakes: A Cross-Sectional Study in Men. The Journal of Nutrition 2021; 151(11) doi: 10.1093/jn/nxab252
44
Kalaiselvi Krishnamoorthy, Ponnulakshmi Rajagopal, Selvaraj Jayaraman. Gut Microbiome and Brain Ageing. 2024;  doi: 10.1007/978-981-99-8803-7_4
45
Thomas D. Leser, Lars Mølbak. Better living through microbial action: the benefits of the mammalian gastrointestinal microbiota on the host. Environmental Microbiology 2009; 11(9) doi: 10.1111/j.1462-2920.2009.01941.x
46
Maximilian Baumgartner, Michaela Lang, Hunter Holley, Daniel Crepaz, Bela Hausmann, Petra Pjevac, Doris Moser, Felix Haller, Fabian Hof, Andrea Beer, Elisabeth Orgler, Adrian Frick, Vineeta Khare, Rayko Evstatiev, Susanne Strohmaier, Christian Primas, Werner Dolak, Thomas Köcher, Kristaps Klavins, Timo Rath, Markus F. Neurath, David Berry, Athanasios Makristathis, Markus Muttenthaler, Christoph Gasche. Mucosal Biofilms Are an Endoscopic Feature of Irritable Bowel Syndrome and Ulcerative Colitis. Gastroenterology 2021; 161(4) doi: 10.1053/j.gastro.2021.06.024
47
Bharati Kadamb Patel, Kadamb Haribhai Patel, Ryan Yuki Huang, Chuen Neng Lee, Shabbir M. Moochhala. The Gut-Skin Microbiota Axis and Its Role in Diabetic Wound Healing—A Review Based on Current Literature. International Journal of Molecular Sciences 2022; 23(4) doi: 10.3390/ijms23042375
48
Nicole M. Koropatkin, Elizabeth A. Cameron, Eric C. Martens. How glycan metabolism shapes the human gut microbiota. Nature Reviews Microbiology 2012; 10(5) doi: 10.1038/nrmicro2746
49
O. O. Hurenko, S. B. Drozdovska. INTESTINAL DYSBIOSIS AS A FACTOR IN THE DEVELOPMENT OF METABOLIC SYNDROME AND INSULIN RESISTANCE . Bulletin of Problems Biology and Medicine 2021; 1(1) doi: 10.29254/2077-4214-2021-1-159-257-264
50
Bernhard Jandl, Satish Dighe, Maximillian Baumgartner, Athanasios Makristathis, Christoph Gasche, Markus Muttenthaler. Gastrointestinal Biofilms: Endoscopic Detection, Disease Relevance, and Therapeutic Strategies. Gastroenterology 2024; 167(6) doi: 10.1053/j.gastro.2024.04.032
51
Ashis K. Samanta, Valeria A. Torok, Nigel J. Percy, Suzanne M. Abimosleh, Gordon S. Howarth. Microbial fingerprinting detects unique bacterial communities in the faecal microbiota of rats with experimentally-induced colitis. The Journal of Microbiology 2012; 50(2) doi: 10.1007/s12275-012-1362-8
52
M. A. Livzan, G. R. Bicbavova, A. E. Romanyuk. Ulcerative colitis: focus on colonic mucosal resistance. Bulletin of Siberian Medicine 2022; 21(1) doi: 10.20538/1682-0363-2022-1-121-132
53
Melanie Schirmer, Lee Denson, Hera Vlamakis, Eric A. Franzosa, Sonia Thomas, Nathan M. Gotman, Paul Rufo, Susan S. Baker, Cary Sauer, James Markowitz, Marian Pfefferkorn, Maria Oliva-Hemker, Joel Rosh, Anthony Otley, Brendan Boyle, David Mack, Robert Baldassano, David Keljo, Neal LeLeiko, Melvin Heyman, Anne Griffiths, Ashish S. Patel, Joshua Noe, Subra Kugathasan, Thomas Walters, Curtis Huttenhower, Jeffrey Hyams, Ramnik J. Xavier. Compositional and Temporal Changes in the Gut Microbiome of Pediatric Ulcerative Colitis Patients Are Linked to Disease Course. Cell Host & Microbe 2018; 24(4) doi: 10.1016/j.chom.2018.09.009
54
Torsten P.M. Scheithauer, Geesje M. Dallinga-Thie, Willem M. de Vos, Max Nieuwdorp, Daniël H. van Raalte. Causality of small and large intestinal microbiota in weight regulation and insulin resistance. Molecular Metabolism 2016; 5(9) doi: 10.1016/j.molmet.2016.06.002
55
Conrad R. Cole, Thomas R. Ziegler. Small bowel bacterial overgrowth: A negative factor in gut adaptation in pediatric SBS. Current Gastroenterology Reports 2007; 9(6) doi: 10.1007/s11894-007-0059-3
56
Daisuke Chinda, Toshihiko Takada, Tatsuya Mikami, Kensuke Shimizu, Kosuke Oana, Tetsu Arai, Kazuki Akitaya, Hirotake Sakuraba, Miyuki Katto, Yusuke Nagara, Hiroshi Makino, Daichi Fujii, Kenji Oishi, Shinsaku Fukuda. Spatial distribution of live gut microbiota and bile acid metabolism in various parts of human large intestine. Scientific Reports 2022; 12(1) doi: 10.1038/s41598-022-07594-6
57
Charles N. Bernstein, Jessica D. Forbes. Gut Microbiome in Inflammatory Bowel Disease and Other Chronic Immune-Mediated Inflammatory Diseases. Inflammatory Intestinal Diseases 2017; 2(2) doi: 10.1159/000481401
58
Jill M. Hoffman, Charalabos Pothoulakis. Inflammation - From Molecular and Cellular Mechanisms to the Clinic. 2017;  doi: 10.1002/9783527692156.ch18
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Alexander Swidsinski, Beate C. Sydora, Yvonne Doerffel, Vera Loening-Baucke, Mario Vaneechoutte, Maryla Lupicki, Juergen Scholze, Herbert Lochs, Levinus A. Dieleman. Viscosity gradient within the mucus layer determines the mucosal barrier function and the spatial organization of the intestinal microbiota. Inflammatory Bowel Diseases 2007; 13(8) doi: 10.1002/ibd.20163
60
Anitra D Thomas, William Parker. Cultivation of Epithelial-Associated Microbiota by The Immune System. Future Microbiology 2010; 5(10) doi: 10.2217/fmb.10.108
61
Angelo Pietro Femia, Alexander Swidsinski, Piero Dolara, Maddalena Salvadori, Amedeo Amedei, Giovanna Caderni, Yohannes Tesfaigzi. Mucin Depleted Foci, Colonic Preneoplastic Lesions Lacking Muc2, Show Up-Regulation of Tlr2 but Not Bacterial Infiltration. PLoS ONE 2012; 7(1) doi: 10.1371/journal.pone.0029918
62
Volker Mai, Peter V Draganov. Recent advances and remaining gaps in our knowledge of associations between gut microbiota and human health. World Journal of Gastroenterology 2009; 15(1): 81-85 doi: 10.3748/wjg.15.81
63
Fengna Chu, Mingchao Shi, Yue Lang, Donghui Shen, Tao Jin, Jie Zhu, Li Cui. Gut Microbiota in Multiple Sclerosis and Experimental Autoimmune Encephalomyelitis: Current Applications and Future Perspectives. Mediators of Inflammation 2018; 2018 doi: 10.1155/2018/8168717
64
Identifying Microorganisms Involved in Specific Pathogen Suppression in Soil. Annual Review of Phytopathology 2007; 45(1) doi: 10.1146/annurev.phyto.45.062806.094354
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Q. Manyan Fung, Andrew Szilagyi. Carbohydrate Elimination or Adaptation Diet for Symptoms of Intestinal Discomfort in IBD: Rationales for “Gibsons’ Conundrum”. International Journal of Inflammation 2012; 2012 doi: 10.1155/2012/493717
66
Hajara Aslam, Wolfgang Marx, Tetyana Rocks, Amy Loughman, Vinoomika Chandrasekaran, Anu Ruusunen, Samantha L. Dawson, Madeline West, Eva Mullarkey, Julie A. Pasco, Felice N. Jacka. The effects of dairy and dairy derivatives on the gut microbiota: a systematic literature review. Gut Microbes 2020; 12(1) doi: 10.1080/19490976.2020.1799533
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James Borneman, J. Ole Becker, Elizabeth Bent, Brian Lanoil, Brian McSpadden Gardener, Rabiu Olatinwo, Laura Presley, Alexandra J. Scupham, Lea Valinsky, Bei Yin. Manual of Environmental Microbiology. 2007;  doi: 10.1128/9781555815882.ch61
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José E. Belizário, Joel Faintuch, Miguel Garay-Malpartida. Gut Microbiome Dysbiosis and Immunometabolism: New Frontiers for Treatment of Metabolic Diseases. Mediators of Inflammation 2018; 2018 doi: 10.1155/2018/2037838
69
Philippe J. Sansonetti, Ruslan Medzhitov. Learning Tolerance while Fighting Ignorance. Cell 2009; 138(3) doi: 10.1016/j.cell.2009.07.024
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Lawrence J Brandt. American Journal of Gastroenterology Lecture: Intestinal Microbiota and the Role of Fecal Microbiota Transplant (FMT) in Treatment of C. difficile Infection. American Journal of Gastroenterology 2013; 108(2) doi: 10.1038/ajg.2012.450
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John Ferguson, Brian Ravert, Michael Gailey. Aspiration: /aspə’rāSH(ə)n/: Noun: An Ambiguous Term Used for a Diagnosis of Uncertainty. Clinical Pulmonary Medicine 2018; 25(5) doi: 10.1097/CPM.0000000000000277
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Rowann Bowcutt, Ruth Forman, Maria Glymenaki, Simon Richard Carding, Kathryn Jane Else, Sheena Margaret Cruickshank. Heterogeneity across the murine small and large intestine. World Journal of Gastroenterology 2014; 20(41): 15216-15232 doi: 10.3748/wjg.v20.i41.15216
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Yuki Young, Maria T. Abreu. Advances in the pathogenesis of inflammatory bowel disease. Current Gastroenterology Reports 2006; 8(6) doi: 10.1007/s11894-006-0037-1
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A. Swidsinski, V. Loening-Baucke, S. Kirsch, Y. Doerffel. Functional biostructure of colonic microbiota (central fermenting area, germinal stock area and separating mucus layer) in healthy subjects and patients with diarrhea treated with Saccharomyces boulardii. Gastroentérologie Clinique et Biologique 2010; 34 doi: 10.1016/S0399-8320(10)70025-7
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Nelson Andrade, Cláudia Marques, Sara Andrade, Cláudia Silva, Ilda Rodrigues, Luísa Guardão, João T. Guimarães, Elisa Keating, Conceição Calhau, Fátima Martel. Effect of chrysin on changes in intestinal environment and microbiome induced by fructose-feeding in rats. Food & Function 2019; 10(8) doi: 10.1039/C9FO01142K
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Thilini N. Jayasinghe, Valentina Chiavaroli, David J. Holland, Wayne S. Cutfield, Justin M. O'Sullivan. The New Era of Treatment for Obesity and Metabolic Disorders: Evidence and Expectations for Gut Microbiome Transplantation. Frontiers in Cellular and Infection Microbiology 2016; 6 doi: 10.3389/fcimb.2016.00015
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Shan Li, Maikel P. Peppelenbosch, Ron Smits. Bacterial biofilms as a potential contributor to mucinous colorectal cancer formation. Biochimica et Biophysica Acta (BBA) - Reviews on Cancer 2019; 1872(1) doi: 10.1016/j.bbcan.2019.05.009
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R. Balfour Sartor. Microbial Influences in Inflammatory Bowel Diseases. Gastroenterology 2008; 134(2) doi: 10.1053/j.gastro.2007.11.059
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Melanie Craven, Charlotte E. Egan, Scot E. Dowd, Sean P. McDonough, Belgin Dogan, Eric Y. Denkers, Dwight Bowman, Ellen J. Scherl, Kenneth W. Simpson, Markus M. Heimesaat. Inflammation Drives Dysbiosis and Bacterial Invasion in Murine Models of Ileal Crohn’s Disease. PLoS ONE 2012; 7(7) doi: 10.1371/journal.pone.0041594
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Mahadev Dhami, Khadga Raj, Shamsher Singh. Relevance of gut microbiota to Alzheimer's Disease (AD): Potential effects of probiotic in management of AD. Aging and Health Research 2023; 3(1) doi: 10.1016/j.ahr.2023.100128
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Hugo Sentenac, Adeline Loyau, Joséphine Leflaive, Dirk S. Schmeller. The significance of biofilms to human, animal, plant and ecosystem health. Functional Ecology 2022; 36(2) doi: 10.1111/1365-2435.13947
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Abdul Malik Tyagi. Mechanism of action of gut microbiota and probiotic Lactobacillus rhamnosus GG on skeletal remodeling in mice. Endocrinology, Diabetes & Metabolism 2024; 7(1) doi: 10.1002/edm2.440
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Y. Momose, A. Maruyama, T. Iwasaki, Y. Miyamoto, K. Itoh. 16S rRNA gene sequence-based analysis of clostridia related to conversion of germfree mice to the normal state. Journal of Applied Microbiology 2009; 107(6) doi: 10.1111/j.1365-2672.2009.04431.x
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Antonio D’Ambrosio, Annamaria Altomare, Tamara Boscarino, Manuele Gori, Paola Balestrieri, Lorenza Putignani, Federica Del Chierico, Simone Carotti, Michele Cicala, Michele Pier Luca Guarino, Vincenzo Piemonte. Mathematical Modeling of Vedolizumab Treatment’s Effect on Microbiota and Intestinal Permeability in Inflammatory Bowel Disease Patients. Bioengineering 2024; 11(7) doi: 10.3390/bioengineering11070710
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Soma Ghosh, Sreemanta Pramanik. Structural diversity, functional aspects and future therapeutic applications of human gut microbiome. Archives of Microbiology 2021; 203(9) doi: 10.1007/s00203-021-02516-y
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Robin G. Lorenz, Vance J. McCracken, Charles O. Elson. Animal models of intestinal inflammation: ineffective communication between coalition members. Springer Seminars in Immunopathology 2005; 27(2) doi: 10.1007/s00281-005-0208-4
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Mireia Lopez-Siles, Margarita Martinez-Medina, Romà Surís-Valls, Xavier Aldeguer, Miriam Sabat-Mir, Sylvia H. Duncan, Harry J. Flint, L. Jesús Garcia-Gil. Changes in the Abundance of Faecalibacterium prausnitzii Phylogroups I and II in the Intestinal Mucosa of Inflammatory Bowel Disease and Patients with Colorectal Cancer. Inflammatory Bowel Diseases 2016; 22(1) doi: 10.1097/MIB.0000000000000590
88
Alexander Swidsinski, Vera Loening-Baucke, Monika Krüger, Steffen Kirsch. Central Nervous System and the Colonic Bioreactor: Analysis of Colonic Microbiota in Patients with Stroke Unravels Unknown Mechanisms of the Host Defense after Brain Injury. Intestinal Research 2012; 10(4) doi: 10.5217/ir.2012.10.4.332
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Leou Ismael Banla, Adam M. Pickrum, Michael Hayward, Christopher J. Kristich, Nita H. Salzman, Manuela Raffatellu. Sortase-Dependent Proteins Promote Gastrointestinal Colonization by Enterococci. Infection and Immunity 2019; 87(5) doi: 10.1128/IAI.00853-18
90
Luc Biedermann, Gerhard Rogler. The intestinal microbiota: its role in health and disease. European Journal of Pediatrics 2015; 174(2) doi: 10.1007/s00431-014-2476-2
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Alexander Swidsinski, Vera Loening‐Baucke. The Human Microbiota. 2013;  doi: 10.1002/9781118409855.ch9
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Mahmoud Salami. Interplay of Good Bacteria and Central Nervous System: Cognitive Aspects and Mechanistic Considerations. Frontiers in Neuroscience 2021; 15 doi: 10.3389/fnins.2021.613120
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