Madunić et al[21] | 2020 | Human CRC cell lines. | (1) Department of Surgery of the LUMC, Leiden, The Netherlands. And (2) Department of Pathology of the VUMC, Amsterdam, The Netherlands | (1) OGlycan release and analysis. And (2) Glycan structure analysis and relative quantification | Further untargeted screening of cell line O-GlcNAcylation paves the way for further exploration of the role of glycosylation in CRC development and drug response, thus identifying new anticancer antibody development targets |
Gao et al[93] | 2020 | LS174T Tn (+), LS174T Tn (-) and LSC cells | Professor Tongzhong Ju, Emory University School of Medicine, Atlanta, United States | (1) Vector construction and cell transfection. (2) Exosome isolation and purification. (3) RNA extraction and qRT-PCR. (4) Protein extraction, deglycosylated preparation, and Western blotting (WB). And (5) Flow cytometry analysis. | CD44 in exosomes may be a potential biomarker for abnormal O-GlcNAcylation. This is the first study to show that abnormal O-GlcNAcylation can affect the expression or delivery of O-glycoproteins through exosomes, providing a new perspective for our study of treatment strategies for human colon cancer |
Gao et al[61] | 2020 | (1) The tumor tissues were freshly acquired by surgical resection. And (2) Normal colorectal mucosa were taken at biopsy from individuals without colorectal malignancies | Beijing Chao-Yang Hospital, Capital Medical University, Beijing, China | (1) RNA extraction and qRT-PCR. (2) WB. (3) Lentivirus-mediated COSMC transfection. (4) Transwell migration and invasion assays. And (5) Flow cytometry analysis | The increased expression of COSMC in human CRC may be caused by endoplasmic reticulum stress, which further enhances malignant tumors by activating EMT without dependence on abnormal O-GlcNAcylation |
Kvorjak et al[54] | 2020 | (1) SW480 (ATCC® CCL-228) and HT-29 (ATCC® HTB-38) cell Lines. And (2) Archived paraffin sections of colonic biopsies and those with colitis associated colon cancer | (1)American Type Culture Collection. And (2) Department of Gastroenterology, University of Pittsburgh, United States | (1) WB. (2) Immunofluorescence confocal microscopy. (3) IHC. (4) Migration and invasion assay. (5) Peripheral blood monocyte isolation and macrophage differentiation. (6) Indirect co-culture assay. Cytokine and chemokine expression detection. (7) Gene expression profiling. Chromatin IP assay. (8) qRT-PCR. And (9) Computational modeling and simulation | To construct a computational model of a signal pathway and detect the inhibitory effect of IL-13 as a possible therapeutic method. Our findings reveal a new cell crossover between colon cells and macrophages in the inflammatory and malignant colon, which contributes to the pathogenesis of colitis-associated CRC |
Liu et al[65] | 2019 | (1) The human CRC cell lines HCT116 and SW480. (2) The human embryonic kidney cells HEK293T. And (3) The human CRC cells LS174T (Tn-positive) | (1) American Type Culture Collection (ATCC). And (2) Dr. Tongzhong Ju of the Emory University School of Medicine, Atlanta, United States | (1) CRISPR/Cas9-mediated knockout of COSMC chaperone. (2) Flow cytometry. (3) Cell migration and invasion assays. (4) Establishment of transplantable metastatic murine models. (5) IHC. (6) Knockdown of H-Ras with shRNA. (7) Re-expression of COSMC in LS174T cells. (8) RNA extraction and qRT-PCR. (9) WB and antibodies. And (10) TCGA colon cancer dataset | Tn antigen expression (a marker of abnormal O-GlcNAcylation) may promote EMT activation by upregulation of h-RAS, possibly leading to CRC metastasis. It also suggests that anti-Tn antigen has a great prospect in tumor immunotherapy |
Biwi et al[22] | 2019 | Human fetal colon CCD841CoN, colon adenocarcinoma HT29, and colon carcinoma HCT116 cells | LUMC, Centre for Proteomics and Metabolomics 2333ZA Leiden, Netherlands | (1) Transcriptomic. (2) IP and WB. (3) Lectin labeling and flow cytometry analysis. (4) Indirect IF and confocal microscopy. (5) Cell harvest for MS. (6) N-glycan release from cell lysates and MS analysis. (7) O-glycan release and MS analysis. And (8) Glycosphingolipid analysis by MS | OGT silencing in HT29 cells upregulates E-cadherin (the main role of epithelial to mesenchymal transition) and changes its glycosylation. Alternatively, OGT silencing interferes with glycophosphatidylcholine biosynthesis, decreasing gangliosides and the increase of globular glycosides. In conclusion, these results provide new insight into the selective regulation of complex glycosylation of O-GlcNAcylation in CRC cells |
Zhu et al[27] | 2019 | (1) The human colon cancer tissue microarray analysis (TMA). (2) Colon cancer tissues and adjacent normal colon tissues. And (3) The CRC cell lines SW480, HCT116, LoVo, COLO205, HT29, CaCo-2 and colonic epithelial cell line NCM-460 | (1) Shanghai Tenth People’s Hospital. And (2) Cell Bank of the Chinese Academy of Sciences. Shanghai, China | (1) IHC, IF, and WB. (2) qRT-PCR. (3) Cell proliferation, Caspase 3/7 activity and soft agar colony formation assay. (4) Co-IP. (5) Chromatin IP. (6) Protein ligation assay (PLA). (7) In vitro O-GlcNAcylation of YY1. (8) Enzymatic labelling of O-GlcNAc sites. (9) Mice experiments. And (10) Bioinformatics analysis | The O-GlcNAcylation of YY1 by SLC22A15 and AANAT provoked oncogenesis of CRC cells, indicating that YY1 O-GlcNAcylation might be a potential effective target for the treatment of CRC |
Yu et al[48] | 2019 | CRC tumor tissue | CHINA-JAPAN Union Hospital of Jilin University | (1) IHC. (2) Cell culture and treatment. (3) Lentivirus obtainment and stable cell lines establishment. (4) qRT-PCR and WB. (5) Cell counting Kit-8 (CCK-8) assay. (6) Flow cytometry assay and IP. (7) In vitro O-GlcNAcylation of ITGA5. (8) Enzymatic labelling of shi'yO-GlcNAc sites. And (9) Xenotransplantation | ITGA5 was highly expressed in CRC tissues and cells, and with increased OGlcNAcylation, its stability was higher, thereby promoting cell proliferation and tumor formation, and reducing apoptosis |
Jiang et al[52] | 2019 | (1) CRC tissue microarrays (HCol-Ade180Sur-09). And (2) Primary CRC tissues and paired adjacent normal tissues samples | (1) Shanghai Outdo Biotech. And (2) Xijing Hospital of Digestive Diseases, Fourth Military Medical University, Xi an, China | (1) Cell culture. (2) Virus packaging. (3) The construction of human full-length OGT (NM_181672). And (4) Dual-luciferase reporter assay | In CRC cells, miR-101/O-GlcNAcylation/ EZH2 signaling forms a feedback loop that promotes metastasis, providing a new insight into the basic theory of tumor metastasis and treatment strategies |
Wu et al[93] | 2019 | Human CRC cell lines HT29, HCT116, SW480, SW620, and normal intestinal epithelial cells NCM460 | Chinese Academy of Sciences Cell Bank, China | (1) RNA extraction, reverse transcription, and qRT-PCR. (2) Cycloheximide or Thiamet-G treatment. (3) WB and Co-IP. (4) Cell viability assay. (5) Colony formation assay. (6) ICH and IF. (7) Cell migration assay. (8) mTOR agonist and inhibitor treatment. (9) Lentivirus production and infection. And (10) Tumorgenicity assay in nude mice | By strengthening the stability of RNA helicase P68 (DDX5) and the activation of AKT/mTOR signaling pathway, the elevation of O-GlcNAcylation significantly promoted the proliferation and metastasis of CRC cells, and manifest a poor prognosis |
Ubillos et al[72] | 2018 | (1) Human CRC cell lines HT29 (ATCC HTB38™), SW480 [SW-480] (ATCC CCL228™) and SW620. [SW620] (ATCC CCL227™). (2) Adenomas with different degrees of dysplastic lesions. And (3) Normal colon tissues from distal or proximal resection margin | Department of Pathology, Maciel Hospital, Montevideo | (1) qRT-PCR. (2) IF microscopy. (3) Analysis of GalNAc-T6 expression on cancer cell lines by flow cytometry. And (4) IHC | The molecular mechanism by which GalNAc-T6 expression predicts improved prognosis in CRC patients with reduced invasiveness in CRC cells expressing GalNAc-T6 is unclear |
Sun et al[15] | 2018 | (1) Paraffin-embedded tissue sections. And (2) Frozen tissues | Emory University School of Medicine, Atlanta, United States | (1) IF. (2) Flow cytometry. (3) FACS. (4) IHC. (5) WB. (6) T-synthase activity assay. (7) Genomic DNA preparation. (8) LOH and mutation analyses. And (9) Total RNA extraction and qRT-PCR | The loss of T-synthetase/COSMC due to genetic and epigenetic inactivation of COSMC may be responsible for the expression of Tn in human CRC cell lines and pancreatic cancer. Simultaneously, there are other mechanisms in Tn positive CRC |
Jiang et al[14] | 2018 | (1) The human primary/metastatic CRC and adjacent normal tissues. And (2) The human CRC LS174T cell line (Tn-positive) | (1) Beijing Chao-Yang Hospital, Capital Medical University, Beijing, China. And (2) Provided by Dr. Tongzhong Ju of Emory University School of Medicine in Atlanta, United States | (1) Immunohistochemical staining of Tn antigen. (2) Exome sequencing. (3) Analysis of DNA methylation by MALDI-TOF mass spectrometry. (4) T-synthase activity assay. (5) RNA extraction and qRT-PCR. (6) WB. (7) Lentiviral-mediated COSMC transfection. (8) Flow cytometry analysis. (9) Cell proliferation, migration, and apoptosis. And (10) Multiplex IHC staining | The expression of MUC2, which plays an essential role in intestinal function, was decreased in CRC and LS174T cells. Abnormal O-GlcNAcylation contributes to the development of CRC by directly inducing the carcinogenic characteristics of cancer cells |
Fernández et al[94] | 2018 | CRC and HEK-293T cells | ATCC | (1) Antibodies, WB, and IF. (2) Gene expression analysis. (3) Proliferation, cell viability, and invasion assays. (4) OCR and extracellular acidification rate (ECAR). And (5) IP and proteomic assay | GCNT3 can be used in stratified CRC patients with a high risk of recurrence and as a biomarker for monitoring the treatment response. The drugs that induce the expression of GCNT3 may be potential antitumor drugs for CRC. The purpose is to reduce adverse events and overcome drug resistance, which is a necessary demand for current patients and the health system |
Harosh-Davidovich et al[50] | 2018 | CT26 murine colon carcinoma cells and NIH-3T3 murine fibroblasts | ATCC | (1) Protein extraction. β-Catenin IP. (2) Affinity purification of β-catenin with Wheat Germ Agglutinin (WGA). (3) WB. (4) Cell motility assay. (5) OGA and OGT silencing. (6) Luciferase reporter assays. (7) qRT-PCR. And (8) In vivo orthotopic mouse model of CRC | O-GlcNAcylation may enhance the proliferation and metastasis of CRC by regulating the expression of catenin and E-cadherin, which proves the influence of O-GlcNAcylation on the poor prognosis of CRC patients |
Venkatakrishnan et al[95] | 2017 | Midsection samples of the spiral colon of the five infected pigs and healthy controls | (1) Life Technologies, Carlsbad, CA, United States. And (2) Department of Medical Chemistry and Cell Biology University of Gothenburg | (1) MUC2 and MUC5AC IF. (2) Fluorescence in situ hybridization of formalin-fixed tissue sections. (3) Mucin isolation and purification. (4) Analysis of mucin fractions. (5) Mucin sample preparation and concentration estimation. (6) Release of O-glycans from pig colon mucins. (7) PGC-LC-MS/MS characterization of O-glycans. And (8) qRT-PCR of core enzyme expression | This study provides a platform for the study of B. hyodysenteriae and its effect on the O-GlcNAcylation of mucopolysaccharide. Polysaccharides that change with infection are candidate structures that may affect the adhesion, growth, virulence gene expression, and chemotaxis |
Guo et al[60] | 2017 | Human colon cancer cell lines LS180, HT-29, Caco-2, LS-174, SW480, and SW620 | American Type Culture Collection (Manassas, VA, United States) | (1) Regulation of colon cancer stem cells and colon tumorigenesis by expression levels of O-GlcNAc. (2) Identification of O-GlcNAc-bound genes in HT-29 cells. (3) Gene expression profiling regulated by O-GlcNAc. (4) Tumor-suppressive functions of transcription factor MYBL1. O-GlcNAc epigenetically regulated. And (5) MYBL1 | An epigenetic mechanism may be involved in the regulation of CCSC population and colon tumor progression through the O-GlcNAcylation level. MYBL1, a transcription activator, as a downstream target, is likely to regulate CRC progression by altering O-GlcNAcylation |
Arike et al[56] | 2017 | (1) Mucus was scraped from the small and large intestine of ConvR and GF C57BL/6 mice. And (2) The insoluble Muc2 mucin was partially purified from duodenum, mid-jejunum, ileum, proximal colon, middle colon and distal colon by repeated 6 M guanidinium hydrochloride (GuHCl) extraction | Department of Medical Biochemistry, University of Gothenburg, Sweden | (1) Partial purification of the Muc2 mucin and its oligosaccharide analysis. And (2) Proteomics analysis of epithelial cells | There was a good correlation between the abundance of OGT and muc2-O-glycan pattern along the intestine. GF mice tend to have shorter glycans and fewer enzymes involved in glycan elongation. Compared with the mice colonized with symbiotic bacteria, the demand for glycan in GF was lower. Glycan is necessary to prevent mucin degradation, but it can also be used as a nutrient source for bacteria. However, the basic mechanism and signaling pathway of host recognizing and adapting intestinal bacteria by changing the expression of glycosyltransferase is still unclear |
Lin et al[96] | 2016 | Surgical samples of stage III CRC patients resected | Chang Gung Memorial Hospital, Taiwan | (1) Two oxaliplatin-based regimens, mFOLFOX6 and XELOX were given postoperative treatment. And (2) GALNT14 genotyping | The GALNT14 TT genotype was associated with the T4 stage and with radical resection and adjuvant oxaliplatin chemotherapy in patients with stage III CRC. In the T4 stage, CEA > 5 ng/mL or mucus histopathology subgroup, the treatment effect was poor |
Steenackers et al[19] | 2016 | Human CRC cell lines HT29, HCT116 and CCD841CoN | - | (1) SDS-PAGE, WB, and Antibody Staining. (2) Cell adhesion assay. (3) Proliferation assays. (4) In vitro cell Survival Assays. (5) Cell migration analysis. And (6) Confocal microscopy | The increase in O-GlcNAcylation of CRC cells gave rise to proliferation and migration of CRC cells. But the potential role and mechanism of O-GlcNAcylation in CRC transfer remain unclear |
Fuell et al[97] | 2015 | (1) C57BL/6J WT and C57BL/6 TCRδ−/− mice. And (2) Mouse small intestine and colon tissue | C57BL/6J WT (WT; acquired from Harlan Labs) and C57BL/6 TCRδ−/− (B6.129P2-Tcrdtm1Mom/J acquired from JAX Laboratories) mice were bred and maintained as specific-pathogen free (SPF) in a conventional animal facility at the University of East Anglia | (1) RNA extraction. (2) qRT-PCR. (3) Sialic acid colorimetric assay. (4) O-glycan colorimetric assay. (5) Isolation of intestinal glycans. (6) Glycan derivatization. And (7) Analysis by MALDI-LIFT-ToF/ToF MS | The role of glycosylated proteins in the regulation of epithelial cells to limit the penetration of intestinal bacteria into the mucosa during microbial community composition changes and/or the acquisition of new organisms from the environment. It is essential to understand whether intestinal O-GlcNAcylation changes through changes in microbial communities or by signaling directly to epithelial cells |